Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MIR639-201ENST00000384974 98 ntBASIC17.59■□□□□ 0.41
APOBP04114 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOBP04114 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOBP04114 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOBP04114 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOBP04114 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC17.57■□□□□ 0.4
APOBP04114 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC17.57■□□□□ 0.4
APOBP04114 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC17.55■□□□□ 0.4
APOBP04114 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
APOBP04114 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOBP04114 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.55■□□□□ 0.4
APOBP04114 AC021231.2-201ENST00000594613 730 ntBASIC17.54■□□□□ 0.4
APOBP04114 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
APOBP04114 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.54■□□□□ 0.4
APOBP04114 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOBP04114 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
APOBP04114 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
APOBP04114 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
APOBP04114 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC17.51■□□□□ 0.39
APOBP04114 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC17.5■□□□□ 0.39
APOBP04114 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
APOBP04114 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
APOBP04114 CR559946.2-201ENST00000623684 991 ntBASIC17.5■□□□□ 0.39
APOBP04114 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
APOBP04114 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
APOBP04114 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
APOBP04114 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC17.49■□□□□ 0.39
APOBP04114 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOBP04114 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
APOBP04114 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
APOBP04114 RNF166-209ENST00000567844 633 ntTSL 5 BASIC17.47■□□□□ 0.39
APOBP04114 MIR3648-2-201ENST00000581792 180 ntBASIC17.47■□□□□ 0.39
APOBP04114 MIR3648-1-201ENST00000615959 180 ntBASIC17.47■□□□□ 0.39
APOBP04114 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC17.47■□□□□ 0.39
APOBP04114 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC17.47■□□□□ 0.39
APOBP04114 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.46■□□□□ 0.39
APOBP04114 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
APOBP04114 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
APOBP04114 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOBP04114 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC17.45■□□□□ 0.38
APOBP04114 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOBP04114 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC17.44■□□□□ 0.38
APOBP04114 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOBP04114 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC17.43■□□□□ 0.38
APOBP04114 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOBP04114 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.42■□□□□ 0.38
APOBP04114 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOBP04114 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
APOBP04114 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.4■□□□□ 0.38
APOBP04114 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC17.4■□□□□ 0.38
APOBP04114 WASH5P-204ENST00000632292 975 ntBASIC17.4■□□□□ 0.38
APOBP04114 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
APOBP04114 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOBP04114 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOBP04114 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.38■□□□□ 0.37
APOBP04114 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOBP04114 AC016575.1-201ENST00000607026 382 ntBASIC17.38■□□□□ 0.37
APOBP04114 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOBP04114 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOBP04114 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
APOBP04114 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOBP04114 DUX4L29-201ENST00000425409 679 ntBASIC17.35■□□□□ 0.37
APOBP04114 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.35■□□□□ 0.37
APOBP04114 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOBP04114 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.34■□□□□ 0.37
APOBP04114 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
APOBP04114 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
APOBP04114 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
APOBP04114 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.33■□□□□ 0.36
APOBP04114 MIR6090-201ENST00000622481 60 ntBASIC17.32■□□□□ 0.36
APOBP04114 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOBP04114 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
APOBP04114 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC17.32■□□□□ 0.36
APOBP04114 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOBP04114 GDI1-215ENST00000630693 786 ntTSL 4 BASIC17.31■□□□□ 0.36
APOBP04114 ABHD17AP3-201ENST00000503096 1137 ntBASIC17.31■□□□□ 0.36
APOBP04114 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOBP04114 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
APOBP04114 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOBP04114 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC17.3■□□□□ 0.36
APOBP04114 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.3■□□□□ 0.36
APOBP04114 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
APOBP04114 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
APOBP04114 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
APOBP04114 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.29■□□□□ 0.36
APOBP04114 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC17.29■□□□□ 0.36
APOBP04114 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
APOBP04114 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
APOBP04114 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOBP04114 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOBP04114 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
APOBP04114 RPS2-209ENST00000529806 993 ntTSL 3 BASIC17.27■□□□□ 0.36
APOBP04114 LINC01971-201ENST00000617888 1048 ntBASIC17.27■□□□□ 0.36
APOBP04114 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
APOBP04114 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
APOBP04114 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
APOBP04114 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.25■□□□□ 0.35
APOBP04114 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
APOBP04114 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
APOBP04114 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms