Protein–RNA interactions for Protein: Q9Y2R4

DDX52, Probable ATP-dependent RNA helicase DDX52, humanhuman

Known RBP eCLIP

Length 599 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX52Q9Y2R4 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC10.95□□□□□ -0.663e-6■□□□□ 10.6
DDX52Q9Y2R4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.239e-8■□□□□ 10.6
DDX52Q9Y2R4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.449e-8■□□□□ 10.6
DDX52Q9Y2R4 WDR60-203ENST00000444851 2769 ntTSL 1 (best)15.36■□□□□ 0.059e-8■□□□□ 10.6
DDX52Q9Y2R4 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.029e-8■□□□□ 10.6
DDX52Q9Y2R4 WDR60-205ENST00000467220 5410 ntTSL 213.16□□□□□ -0.39e-8■□□□□ 10.6
DDX52Q9Y2R4 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.799e-8■□□□□ 10.6
DDX52Q9Y2R4 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.472e-6■□□□□ 10.5
DDX52Q9Y2R4 ADNP-204ENST00000396032 4581 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.692e-6■□□□□ 10.5
DDX52Q9Y2R4 ADNP-206ENST00000621696 6224 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.812e-6■□□□□ 10.5
DDX52Q9Y2R4 PRSS21-205ENST00000571141 484 ntTSL 221.91■■□□□ 1.12e-13■□□□□ 10.5
DDX52Q9Y2R4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.07■□□□□ 0.322e-13■□□□□ 10.5
DDX52Q9Y2R4 THAP9-AS1-202ENST00000504520 2770 ntTSL 1 (best) BASIC13.79□□□□□ -0.29e-13■□□□□ 10.5
DDX52Q9Y2R4 SEC31A-218ENST00000506495 541 ntTSL 411.75□□□□□ -0.539e-13■□□□□ 10.5
DDX52Q9Y2R4 THAP9-AS1-208ENST00000508772 566 ntTSL 411.75□□□□□ -0.539e-13■□□□□ 10.5
DDX52Q9Y2R4 SEC31A-220ENST00000507051 458 ntTSL 411.07□□□□□ -0.649e-13■□□□□ 10.5
DDX52Q9Y2R4 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC10.61□□□□□ -0.719e-13■□□□□ 10.5
DDX52Q9Y2R4 THAP9-AS1-210ENST00000511271 516 ntTSL 210.21□□□□□ -0.779e-13■□□□□ 10.5
DDX52Q9Y2R4 SEC31A-222ENST00000507676 551 ntTSL 48.93□□□□□ -0.989e-13■□□□□ 10.5
DDX52Q9Y2R4 SEC31A-211ENST00000503210 553 ntTSL 48.47□□□□□ -1.059e-13■□□□□ 10.5
DDX52Q9Y2R4 THAP9-AS1-211ENST00000512932 971 ntTSL 28.42□□□□□ -1.069e-13■□□□□ 10.5
DDX52Q9Y2R4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.98□□□□□ -1.459e-13■□□□□ 10.5
DDX52Q9Y2R4 GGA2-215ENST00000569189 586 ntTSL 528.91■■■□□ 2.221e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-203ENST00000562944 388 ntTSL 527.83■■■□□ 2.051e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.29■■□□□ 1.641e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-204ENST00000563047 366 ntTSL 525.16■■□□□ 1.621e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-205ENST00000563494 553 ntTSL 525.07■■□□□ 1.61e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-212ENST00000568799 1403 ntTSL 525.01■■□□□ 1.591e-6■□□□□ 10.4
DDX52Q9Y2R4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.971e-6■□□□□ 10.4
DDX52Q9Y2R4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.751e-6■□□□□ 10.4
DDX52Q9Y2R4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.561e-6■□□□□ 10.4
DDX52Q9Y2R4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.471e-6■□□□□ 10.4
DDX52Q9Y2R4 MFSD2B-204ENST00000469562 2613 ntTSL 1 (best)17.63■□□□□ 0.411e-6■□□□□ 10.4
DDX52Q9Y2R4 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.131e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-202ENST00000562117 387 ntTSL 515.57■□□□□ 0.081e-6■□□□□ 10.4
DDX52Q9Y2R4 MFSD2B-205ENST00000495018 1156 ntTSL 1 (best)15.37■□□□□ 0.051e-6■□□□□ 10.4
DDX52Q9Y2R4 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.071e-6■□□□□ 10.4
DDX52Q9Y2R4 ELOVL6-205ENST00000506625 610 ntTSL 411.53□□□□□ -0.561e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.641e-6■□□□□ 10.4
DDX52Q9Y2R4 ELOVL6-204ENST00000506461 575 ntTSL 410.11□□□□□ -0.791e-6■□□□□ 10.4
DDX52Q9Y2R4 UVSSA-202ENST00000389851 12605 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.821e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-217ENST00000570111 563 ntTSL 59.8□□□□□ -0.841e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-207ENST00000566651 332 ntTSL 39.32□□□□□ -0.921e-6■□□□□ 10.4
DDX52Q9Y2R4 GGA2-216ENST00000569300 572 ntTSL 46.85□□□□□ -1.311e-6■□□□□ 10.4
DDX52Q9Y2R4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.381e-6■□□□□ 10.4
DDX52Q9Y2R4 ELOVL6-203ENST00000503885 458 ntTSL 45.85□□□□□ -1.471e-6■□□□□ 10.4
DDX52Q9Y2R4 ELOVL6-208ENST00000514184 607 ntTSL 33.94□□□□□ -1.781e-6■□□□□ 10.4
DDX52Q9Y2R4 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC34.47■■■■□ 3.112e-17■□□□□ 10.4
DDX52Q9Y2R4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC34.18■■■■□ 3.062e-17■□□□□ 10.4
DDX52Q9Y2R4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC33.61■■■□□ 2.972e-17■□□□□ 10.4
DDX52Q9Y2R4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC33.61■■■□□ 2.972e-17■□□□□ 10.4
DDX52Q9Y2R4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.23■■□□□ 1.792e-17■□□□□ 10.4
DDX52Q9Y2R4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.99■■□□□ 1.432e-17■□□□□ 10.4
DDX52Q9Y2R4 ACTB-203ENST00000417101 472 ntTSL 425.87■■□□□ 1.736e-23■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-238ENST00000534647 866 ntTSL 513.68□□□□□ -0.223e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-235ENST00000533189 498 ntTSL 312.59□□□□□ -0.393e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.753e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC9.81□□□□□ -0.843e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC9.56□□□□□ -0.883e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.943e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC9.17□□□□□ -0.943e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC9.17□□□□□ -0.943e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.973e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC8.84□□□□□ -0.993e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC8.82□□□□□ -13e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC8.82□□□□□ -13e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC8.76□□□□□ -1.013e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC8.72□□□□□ -1.013e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC8.72□□□□□ -1.013e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC8.56□□□□□ -1.043e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC8.46□□□□□ -1.063e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.4□□□□□ -1.063e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC8.35□□□□□ -1.073e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC8.35□□□□□ -1.073e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC8.23□□□□□ -1.093e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC8.15□□□□□ -1.13e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC8.15□□□□□ -1.13e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC8.14□□□□□ -1.113e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.69□□□□□ -1.183e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.63□□□□□ -1.193e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.61□□□□□ -1.193e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.42□□□□□ -1.223e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.42□□□□□ -1.223e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.22□□□□□ -1.253e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.64□□□□□ -1.353e-9■□□□□ 10.4
DDX52Q9Y2R4 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.64□□□□□ -1.353e-9■□□□□ 10.4
DDX52Q9Y2R4 TMC6-210ENST00000588792 843 ntTSL 221.65■■□□□ 1.069e-7■□□□□ 10.4
DDX52Q9Y2R4 TMC6-205ENST00000586126 821 ntTSL 319.68■□□□□ 0.749e-7■□□□□ 10.4
DDX52Q9Y2R4 TMC6-223ENST00000592594 551 ntTSL 419.46■□□□□ 0.719e-7■□□□□ 10.4
DDX52Q9Y2R4 TMC6-207ENST00000586697 571 ntTSL 417.55■□□□□ 0.49e-7■□□□□ 10.4
DDX52Q9Y2R4 KLHL24-207ENST00000468001 613 ntTSL 321.36■■□□□ 1.012e-7■□□□□ 10.3
DDX52Q9Y2R4 FASN-213ENST00000637693 100 ntTSL 511.34□□□□□ -0.591e-11■□□□□ 10.3
DDX52Q9Y2R4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.9■□□□□ 0.31e-323■□□□□ 10.2
DDX52Q9Y2R4 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.56■□□□□ 0.241e-323■□□□□ 10.2
DDX52Q9Y2R4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.12■■■□□ 2.572e-7■□□□□ 10.2
DDX52Q9Y2R4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.572e-7■□□□□ 10.2
DDX52Q9Y2R4 ZNF706-215ENST00000523922 493 ntTSL 326.88■■□□□ 1.892e-7■□□□□ 10.2
DDX52Q9Y2R4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC22.17■■□□□ 1.142e-7■□□□□ 10.2
DDX52Q9Y2R4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.97■■□□□ 1.112e-7■□□□□ 10.2
DDX52Q9Y2R4 ZNF706-210ENST00000520454 488 ntTSL 321.91■■□□□ 1.12e-7■□□□□ 10.2
Retrieved 100 of 4,483 protein–RNA pairs in 177.7 ms