RNA–Protein interactions for RNA: ENST00000426142.6

CTNND1-207, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-207ENST00000426142 DCAF8L2P0C7V8 631 aa14.12□□□□□ -0.15
CTNND1-207ENST00000426142 SUPT5HO00267 1087 aaKnown RBP13.28□□□□□ -0.28
CTNND1-207ENST00000426142 NISCHQ9Y2I1 1504 aa13.28□□□□□ -0.28
CTNND1-207ENST00000426142 SHROOM4Q9ULL8 1493 aa13.14□□□□□ -0.31
CTNND1-207ENST00000426142 EHMT2Q96KQ7 1210 aa13.01□□□□□ -0.33
CTNND1-207ENST00000426142 FAM9AQ8IZU1 332 aaPredicted RBP12.57□□□□□ -0.4
CTNND1-207ENST00000426142 TTBK1Q5TCY1 1321 aaPredicted RBP12.53□□□□□ -0.4
CTNND1-207ENST00000426142 APLP2Q06481 763 aa12.52□□□□□ -0.4
CTNND1-207ENST00000426142 RANGAP1P46060 587 aaPredicted RBP12.44□□□□□ -0.42
CTNND1-207ENST00000426142 ATP1B4Q9UN42 357 aaPredicted RBP12.27□□□□□ -0.44
CTNND1-207ENST00000426142 PCGF6Q9BYE7 350 aa12.27□□□□□ -0.45
CTNND1-207ENST00000426142 TRIM41Q8WV44 630 aa12.24□□□□□ -0.45
CTNND1-207ENST00000426142 PELP1Q8IZL8 1130 aaKnown RBP12.2□□□□□ -0.46
CTNND1-207ENST00000426142 UBTFP17480 764 aaKnown RBP12.13□□□□□ -0.47
CTNND1-207ENST00000426142 CCER1Q8TC90 406 aaPredicted RBP12.07□□□□□ -0.48
CTNND1-207ENST00000426142 PPARGC1BQ86YN6 1023 aaKnown RBP12.03□□□□□ -0.48
CTNND1-207ENST00000426142 ZEB1P37275 1124 aaPredicted RBP11.89□□□□□ -0.51
CTNND1-207ENST00000426142 CENPBP07199 599 aaPredicted RBP11.86□□□□□ -0.51
CTNND1-207ENST00000426142 YTHDC1Q96MU7 727 aaKnown RBP11.85□□□□□ -0.51
CTNND1-207ENST00000426142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.83□□□□□ -0.52
CTNND1-207ENST00000426142 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
CTNND1-207ENST00000426142 ITGAEP38570 1179 aa11.82□□□□□ -0.52
CTNND1-207ENST00000426142 MYT1LQ9UL68 1186 aa11.81□□□□□ -0.52
CTNND1-207ENST00000426142 ERICH6Q7L0X2 663 aa11.79□□□□□ -0.52
CTNND1-207ENST00000426142 LOC105371045A0A1W2PR82 267 aa11.75□□□□□ -0.53
CTNND1-207ENST00000426142 POLR3GLQ9BT43 218 aa11.71□□□□□ -0.54
CTNND1-207ENST00000426142 PABPN1Q86U42 306 aaKnown RBP eCLIP11.69□□□□□ -0.544e-7■□□□□ 8.4
CTNND1-207ENST00000426142 NEFLP07196 543 aa11.68□□□□□ -0.54
CTNND1-207ENST00000426142 CHIC1Q5VXU3 224 aa11.68□□□□□ -0.54
CTNND1-207ENST00000426142 ABCC9O60706 1549 aa11.68□□□□□ -0.54
CTNND1-207ENST00000426142 TRIM26Q12899 539 aaPredicted RBP11.68□□□□□ -0.54
CTNND1-207ENST00000426142 CNGB1Q14028 1251 aaPredicted RBP11.65□□□□□ -0.54
CTNND1-207ENST00000426142 SLC4A1APQ9BWU0 796 aaKnown RBP11.51□□□□□ -0.57
CTNND1-207ENST00000426142 HRCP23327 699 aa11.5□□□□□ -0.57
CTNND1-207ENST00000426142 FAM50AQ14320 339 aaKnown RBP11.48□□□□□ -0.57
CTNND1-207ENST00000426142 FBLN2P98095 1184 aa11.43□□□□□ -0.58
CTNND1-207ENST00000426142 TRIM52Q96A61 297 aa11.41□□□□□ -0.58
CTNND1-207ENST00000426142 NEUROD1Q13562 356 aa11.37□□□□□ -0.59
CTNND1-207ENST00000426142 DAXXQ9UER7 740 aaPredicted RBP11.35□□□□□ -0.59
CTNND1-207ENST00000426142 ARID3CA6NKF2 412 aa11.34□□□□□ -0.59
CTNND1-207ENST00000426142 ZNF326Q5BKZ1 582 aaKnown RBP11.31□□□□□ -0.6
CTNND1-207ENST00000426142 P3H3Q8IVL6 736 aa11.3□□□□□ -0.6
CTNND1-207ENST00000426142 DIEXFQ68CQ4 756 aaKnown RBP11.28□□□□□ -0.6
CTNND1-207ENST00000426142 CLSPNQ9HAW4 1339 aa11.21□□□□□ -0.61
CTNND1-207ENST00000426142 MYT1Q01538 1121 aa11.19□□□□□ -0.62
CTNND1-207ENST00000426142 SCRIBQ14160 1630 aa11.18□□□□□ -0.62
CTNND1-207ENST00000426142 ZNF777Q9ULD5 760 aaPredicted RBP11.18□□□□□ -0.62
CTNND1-207ENST00000426142 BCANQ96GW7 911 aa11.17□□□□□ -0.62
CTNND1-207ENST00000426142 CSRNP3Q8WYN3 585 aa11.13□□□□□ -0.63
CTNND1-207ENST00000426142 SLC24A1O60721 1099 aa11.12□□□□□ -0.63
CTNND1-207ENST00000426142 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
CTNND1-207ENST00000426142 ANP32CO43423 234 aa11.11□□□□□ -0.63
CTNND1-207ENST00000426142 BCL11AQ9H165 835 aa11.11□□□□□ -0.63
CTNND1-207ENST00000426142 PLPPR3Q6T4P5 718 aa11.09□□□□□ -0.63
CTNND1-207ENST00000426142 CANXP27824 592 aaKnown RBP11.01□□□□□ -0.65
CTNND1-207ENST00000426142 RTL5Q5HYW3 569 aaPredicted RBP11.01□□□□□ -0.65
CTNND1-207ENST00000426142 CHGAP10645 457 aaKnown RBP11.01□□□□□ -0.65
CTNND1-207ENST00000426142 CDK11AQ9UQ88 783 aaPredicted RBP11□□□□□ -0.65
CTNND1-207ENST00000426142 GTF3C3Q9Y5Q9 886 aa10.99□□□□□ -0.65
CTNND1-207ENST00000426142 ZBTB47Q9UFB7 747 aaPredicted RBP10.99□□□□□ -0.65
CTNND1-207ENST00000426142 ESF1Q9H501 851 aaKnown RBP10.99□□□□□ -0.65
CTNND1-207ENST00000426142 STAG3Q9UJ98 1225 aa10.96□□□□□ -0.66
CTNND1-207ENST00000426142 NEFMP07197 916 aa10.96□□□□□ -0.66
CTNND1-207ENST00000426142 ZCCHC6Q5VYS8 1495 aaKnown RBP10.96□□□□□ -0.66
CTNND1-207ENST00000426142 CHIC2Q9UKJ5 165 aa10.95□□□□□ -0.66
CTNND1-207ENST00000426142 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
CTNND1-207ENST00000426142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.93□□□□□ -0.661e-8■■□□□ 13.5
CTNND1-207ENST00000426142 TONSLQ96HA7 1378 aa10.89□□□□□ -0.67
CTNND1-207ENST00000426142 SENP3Q9H4L4 574 aaPredicted RBP10.87□□□□□ -0.67
CTNND1-207ENST00000426142 CHMP7Q8WUX9 453 aaPredicted RBP10.86□□□□□ -0.67
CTNND1-207ENST00000426142 SALL2Q9Y467 1007 aaPredicted RBP10.85□□□□□ -0.67
CTNND1-207ENST00000426142 KDM2AQ9Y2K7 1162 aa10.83□□□□□ -0.68
CTNND1-207ENST00000426142 DDX10Q13206 875 aaKnown RBP10.83□□□□□ -0.68
CTNND1-207ENST00000426142 FAM9BQ8IZU0 186 aa10.83□□□□□ -0.68
CTNND1-207ENST00000426142 CCDC180Q9P1Z9 1646 aa10.82□□□□□ -0.68
CTNND1-207ENST00000426142 NPM2Q86SE8 214 aaKnown RBP10.81□□□□□ -0.68
CTNND1-207ENST00000426142 KCNH8Q96L42 1107 aa10.8□□□□□ -0.68
CTNND1-207ENST00000426142 MTUS2Q5JR59 1369 aa10.79□□□□□ -0.68
CTNND1-207ENST00000426142 TSPY4P0CV99 314 aa10.78□□□□□ -0.68
CTNND1-207ENST00000426142 TSPY10P0CW01 314 aa10.78□□□□□ -0.68
CTNND1-207ENST00000426142 HNRNPUQ00839 825 aaKnown RBP eCLIP10.78□□□□□ -0.68
CTNND1-207ENST00000426142 RB1CC1Q8TDY2 1594 aa10.78□□□□□ -0.68
CTNND1-207ENST00000426142 HIRIP3Q9BW71 556 aaPredicted RBP10.77□□□□□ -0.68
CTNND1-207ENST00000426142 PLEKHG5O94827 1062 aa10.77□□□□□ -0.69
CTNND1-207ENST00000426142 SCAF1Q9H7N4 1312 aaKnown RBP10.77□□□□□ -0.69
CTNND1-207ENST00000426142 ACIN1Q9UKV3 1341 aaKnown RBP10.77□□□□□ -0.69
CTNND1-207ENST00000426142 RRP7BPQ9NSQ0 103 aa10.76□□□□□ -0.69
CTNND1-207ENST00000426142 FKBP8Q14318 412 aa10.76□□□□□ -0.69
CTNND1-207ENST00000426142 CLIP1P30622 1438 aa10.73□□□□□ -0.69
CTNND1-207ENST00000426142 ANP32AP39687 249 aaKnown RBP10.72□□□□□ -0.69
CTNND1-207ENST00000426142 TMC1Q8TDI8 760 aa10.72□□□□□ -0.69
CTNND1-207ENST00000426142 DCAF1Q9Y4B6 1507 aa10.71□□□□□ -0.69
CTNND1-207ENST00000426142 ZBTB7CA1YPR0 619 aa10.71□□□□□ -0.69
CTNND1-207ENST00000426142 A0A0G2JS52 829 aa10.7□□□□□ -0.7
CTNND1-207ENST00000426142 WDR43Q15061 677 aaKnown RBP eCLIP10.69□□□□□ -0.73e-9■■■□□ 15.6
CTNND1-207ENST00000426142 RSF1Q96T23 1441 aaPredicted RBP10.68□□□□□ -0.7
CTNND1-207ENST00000426142 BAZ1BQ9UIG0 1483 aaKnown RBP10.67□□□□□ -0.7
CTNND1-207ENST00000426142 RGL3Q3MIN7 710 aa10.67□□□□□ -0.7
CTNND1-207ENST00000426142 C14orf37Q86TY3 774 aa10.67□□□□□ -0.7
CTNND1-207ENST00000426142 PLEKHD1A6NEE1 506 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms