RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 DCAF8L2P0C7V8 631 aa14.2□□□□□ -0.14
CTNND1-220ENST00000529526 SUPT5HO00267 1087 aaKnown RBP13.49□□□□□ -0.25
CTNND1-220ENST00000529526 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
CTNND1-220ENST00000529526 NISCHQ9Y2I1 1504 aa13.24□□□□□ -0.29
CTNND1-220ENST00000529526 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
CTNND1-220ENST00000529526 TTBK1Q5TCY1 1321 aaPredicted RBP12.79□□□□□ -0.36
CTNND1-220ENST00000529526 FAM9AQ8IZU1 332 aaPredicted RBP12.78□□□□□ -0.36
CTNND1-220ENST00000529526 APLP2Q06481 763 aa12.77□□□□□ -0.37
CTNND1-220ENST00000529526 PELP1Q8IZL8 1130 aaKnown RBP12.74□□□□□ -0.37
CTNND1-220ENST00000529526 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
CTNND1-220ENST00000529526 RANGAP1P46060 587 aaPredicted RBP12.61□□□□□ -0.39
CTNND1-220ENST00000529526 ATP1B4Q9UN42 357 aaPredicted RBP12.44□□□□□ -0.42
CTNND1-220ENST00000529526 TRIM41Q8WV44 630 aa12.42□□□□□ -0.42
CTNND1-220ENST00000529526 CCER1Q8TC90 406 aaPredicted RBP12.4□□□□□ -0.42
CTNND1-220ENST00000529526 CENPBP07199 599 aaPredicted RBP12.33□□□□□ -0.44
CTNND1-220ENST00000529526 ERICH6Q7L0X2 663 aa12.33□□□□□ -0.44
CTNND1-220ENST00000529526 UBTFP17480 764 aaKnown RBP12.32□□□□□ -0.44
CTNND1-220ENST00000529526 ZEB1P37275 1124 aaPredicted RBP12.29□□□□□ -0.44
CTNND1-220ENST00000529526 PPARGC1BQ86YN6 1023 aaKnown RBP12.27□□□□□ -0.45
CTNND1-220ENST00000529526 YTHDC1Q96MU7 727 aaKnown RBP12.26□□□□□ -0.45
CTNND1-220ENST00000529526 NEFLP07196 543 aa12.11□□□□□ -0.47
CTNND1-220ENST00000529526 ITGAEP38570 1179 aa12.03□□□□□ -0.48
CTNND1-220ENST00000529526 TRIM26Q12899 539 aaPredicted RBP12□□□□□ -0.49
CTNND1-220ENST00000529526 POLR3GLQ9BT43 218 aa11.97□□□□□ -0.49
CTNND1-220ENST00000529526 LOC105371045A0A1W2PR82 267 aa11.96□□□□□ -0.49
CTNND1-220ENST00000529526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.94□□□□□ -0.5
CTNND1-220ENST00000529526 HNRNPUL2Q1KMD3 747 aaKnown RBP11.94□□□□□ -0.5
CTNND1-220ENST00000529526 MYT1LQ9UL68 1186 aa11.94□□□□□ -0.5
CTNND1-220ENST00000529526 CNGB1Q14028 1251 aaPredicted RBP11.91□□□□□ -0.5
CTNND1-220ENST00000529526 HRCP23327 699 aa11.89□□□□□ -0.51
CTNND1-220ENST00000529526 CHIC1Q5VXU3 224 aa11.82□□□□□ -0.52
CTNND1-220ENST00000529526 DAXXQ9UER7 740 aaPredicted RBP11.78□□□□□ -0.52
CTNND1-220ENST00000529526 MYT1Q01538 1121 aa11.76□□□□□ -0.53
CTNND1-220ENST00000529526 SLC4A1APQ9BWU0 796 aaKnown RBP11.73□□□□□ -0.53
CTNND1-220ENST00000529526 FAM50AQ14320 339 aaKnown RBP11.67□□□□□ -0.54
CTNND1-220ENST00000529526 DIEXFQ68CQ4 756 aaKnown RBP11.64□□□□□ -0.55
CTNND1-220ENST00000529526 PABPN1Q86U42 306 aaKnown RBP eCLIP11.62□□□□□ -0.554e-7■□□□□ 8.4
CTNND1-220ENST00000529526 NEUROD1Q13562 356 aa11.61□□□□□ -0.55
CTNND1-220ENST00000529526 TRIM52Q96A61 297 aa11.6□□□□□ -0.55
CTNND1-220ENST00000529526 CLSPNQ9HAW4 1339 aa11.56□□□□□ -0.56
CTNND1-220ENST00000529526 ABCC9O60706 1549 aa11.55□□□□□ -0.56
CTNND1-220ENST00000529526 BCANQ96GW7 911 aa11.54□□□□□ -0.56
CTNND1-220ENST00000529526 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
CTNND1-220ENST00000529526 ZNF326Q5BKZ1 582 aaKnown RBP11.51□□□□□ -0.57
CTNND1-220ENST00000529526 RTL5Q5HYW3 569 aaPredicted RBP11.49□□□□□ -0.57
CTNND1-220ENST00000529526 FBLN2P98095 1184 aa11.44□□□□□ -0.58
CTNND1-220ENST00000529526 GTF3C3Q9Y5Q9 886 aa11.43□□□□□ -0.58
CTNND1-220ENST00000529526 ARID3CA6NKF2 412 aa11.42□□□□□ -0.58
CTNND1-220ENST00000529526 ANP32CO43423 234 aa11.42□□□□□ -0.58
CTNND1-220ENST00000529526 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
CTNND1-220ENST00000529526 BCL11AQ9H165 835 aa11.38□□□□□ -0.59
CTNND1-220ENST00000529526 SLC24A1O60721 1099 aa11.34□□□□□ -0.59
CTNND1-220ENST00000529526 CDK11AQ9UQ88 783 aaPredicted RBP11.33□□□□□ -0.6
CTNND1-220ENST00000529526 CANXP27824 592 aaKnown RBP11.3□□□□□ -0.6
CTNND1-220ENST00000529526 ZBTB47Q9UFB7 747 aaPredicted RBP11.29□□□□□ -0.6
CTNND1-220ENST00000529526 ZNF777Q9ULD5 760 aaPredicted RBP11.29□□□□□ -0.6
CTNND1-220ENST00000529526 CSRNP3Q8WYN3 585 aa11.24□□□□□ -0.61
CTNND1-220ENST00000529526 ACIN1Q9UKV3 1341 aaKnown RBP11.2□□□□□ -0.62
CTNND1-220ENST00000529526 NPM2Q86SE8 214 aaKnown RBP11.2□□□□□ -0.62
CTNND1-220ENST00000529526 NEFMP07197 916 aa11.19□□□□□ -0.62
CTNND1-220ENST00000529526 SCRIBQ14160 1630 aa11.16□□□□□ -0.62
CTNND1-220ENST00000529526 PLPPR3Q6T4P5 718 aa11.14□□□□□ -0.63
CTNND1-220ENST00000529526 ANP32AP39687 249 aaKnown RBP11.13□□□□□ -0.63
CTNND1-220ENST00000529526 CHGAP10645 457 aaKnown RBP11.13□□□□□ -0.63
CTNND1-220ENST00000529526 FKBP8Q14318 412 aa11.13□□□□□ -0.63
CTNND1-220ENST00000529526 TONSLQ96HA7 1378 aa11.11□□□□□ -0.63
CTNND1-220ENST00000529526 SALL2Q9Y467 1007 aaPredicted RBP11.1□□□□□ -0.63
CTNND1-220ENST00000529526 FAM9BQ8IZU0 186 aa11.1□□□□□ -0.63
CTNND1-220ENST00000529526 DDX10Q13206 875 aaKnown RBP11.09□□□□□ -0.63
CTNND1-220ENST00000529526 CHIC2Q9UKJ5 165 aa11.09□□□□□ -0.63
CTNND1-220ENST00000529526 HNRNPUQ00839 825 aaKnown RBP eCLIP11.08□□□□□ -0.64
CTNND1-220ENST00000529526 STAG3Q9UJ98 1225 aa11.06□□□□□ -0.64
CTNND1-220ENST00000529526 ESF1Q9H501 851 aaKnown RBP11.06□□□□□ -0.64
CTNND1-220ENST00000529526 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.05□□□□□ -0.641e-8■■□□□ 13.5
CTNND1-220ENST00000529526 HSP90AA1P07900 732 aaKnown RBP11□□□□□ -0.65
CTNND1-220ENST00000529526 KDM2AQ9Y2K7 1162 aa11□□□□□ -0.65
CTNND1-220ENST00000529526 HIRIP3Q9BW71 556 aaPredicted RBP11□□□□□ -0.65
CTNND1-220ENST00000529526 DCAF1Q9Y4B6 1507 aa10.98□□□□□ -0.65
CTNND1-220ENST00000529526 SENP3Q9H4L4 574 aaPredicted RBP10.97□□□□□ -0.65
CTNND1-220ENST00000529526 TMC1Q8TDI8 760 aa10.97□□□□□ -0.65
CTNND1-220ENST00000529526 IRX6P78412 446 aaPredicted RBP10.96□□□□□ -0.65
CTNND1-220ENST00000529526 NPM1P06748 294 aaKnown RBP eCLIP10.95□□□□□ -0.66
CTNND1-220ENST00000529526 NBR1Q14596 966 aa10.94□□□□□ -0.66
CTNND1-220ENST00000529526 CCDC136Q96JN2 1154 aa10.94□□□□□ -0.66
CTNND1-220ENST00000529526 UPF2Q9HAU5 1272 aaKnown RBP10.94□□□□□ -0.66
CTNND1-220ENST00000529526 ZCCHC6Q5VYS8 1495 aaKnown RBP10.94□□□□□ -0.66
CTNND1-220ENST00000529526 MRS2Q9HD23 443 aa10.93□□□□□ -0.66
CTNND1-220ENST00000529526 EIF5BO60841 1220 aaKnown RBP10.93□□□□□ -0.66
CTNND1-220ENST00000529526 WDR43Q15061 677 aaKnown RBP eCLIP10.93□□□□□ -0.663e-9■■■□□ 15.6
CTNND1-220ENST00000529526 ANP32BQ92688 251 aaKnown RBP10.92□□□□□ -0.66
CTNND1-220ENST00000529526 ARXQ96QS3 562 aa10.92□□□□□ -0.66
CTNND1-220ENST00000529526 MIER1Q8N108 512 aa10.92□□□□□ -0.66
CTNND1-220ENST00000529526 MTUS2Q5JR59 1369 aa10.91□□□□□ -0.66
CTNND1-220ENST00000529526 RRP7BPQ9NSQ0 103 aa10.9□□□□□ -0.66
CTNND1-220ENST00000529526 TSPY4P0CV99 314 aa10.89□□□□□ -0.67
CTNND1-220ENST00000529526 TSPY10P0CW01 314 aa10.89□□□□□ -0.67
CTNND1-220ENST00000529526 SCAF1Q9H7N4 1312 aaKnown RBP10.89□□□□□ -0.67
CTNND1-220ENST00000529526 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
CTNND1-220ENST00000529526 SENP3-EIF4A1A0A087X0R7 540 aa10.88□□□□□ -0.67
CTNND1-220ENST00000529526 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms