RNA–Protein interactions for RNA: ENST00000529919.5

CTNND1-222, Transcript of catenin delta 1, human

TSL 5 BASIC

Gene CTNND1, Length 4,780 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-222	ENST00000529919	DCAF8L2	P0C7V8	631 aa		14.25	□□□□□ -0.13
CTNND1-222	ENST00000529919	NISCH	Q9Y2I1	1504 aa		13.7	□□□□□ -0.22
CTNND1-222	ENST00000529919	SUPT5H	O00267	1087 aa	Known RBP	12.99	□□□□□ -0.33
CTNND1-222	ENST00000529919	SHROOM4	Q9ULL8	1493 aa		12.95	□□□□□ -0.34
CTNND1-222	ENST00000529919	PELP1	Q8IZL8	1130 aa	Known RBP	12.75	□□□□□ -0.37
CTNND1-222	ENST00000529919	EHMT2	Q96KQ7	1210 aa		12.59	□□□□□ -0.39
CTNND1-222	ENST00000529919	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.4	□□□□□ -0.42
CTNND1-222	ENST00000529919	PCGF6	Q9BYE7	350 aa		12.38	□□□□□ -0.43
CTNND1-222	ENST00000529919	APLP2	Q06481	763 aa		12.3	□□□□□ -0.44
CTNND1-222	ENST00000529919	CENPB	P07199	599 aa	Predicted RBP	12.29	□□□□□ -0.44
CTNND1-222	ENST00000529919	ABCC9	O60706	1549 aa		12.29	□□□□□ -0.44
CTNND1-222	ENST00000529919	ERICH6	Q7L0X2	663 aa		12.27	□□□□□ -0.45
CTNND1-222	ENST00000529919	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.21	□□□□□ -0.45
CTNND1-222	ENST00000529919	RANGAP1	P46060	587 aa	Predicted RBP	12.17	□□□□□ -0.46
CTNND1-222	ENST00000529919	CCER1	Q8TC90	406 aa	Predicted RBP	12.17	□□□□□ -0.46
CTNND1-222	ENST00000529919	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.16	□□□□□ -0.46	4e-7	■□□□□ 8.4
CTNND1-222	ENST00000529919	MYT1	Q01538	1121 aa		12.14	□□□□□ -0.47
CTNND1-222	ENST00000529919	ZEB1	P37275	1124 aa	Predicted RBP	12.11	□□□□□ -0.47
CTNND1-222	ENST00000529919	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.1	□□□□□ -0.47
CTNND1-222	ENST00000529919	TRIM41	Q8WV44	630 aa		12.06	□□□□□ -0.48
CTNND1-222	ENST00000529919	YTHDC1	Q96MU7	727 aa	Known RBP	12	□□□□□ -0.49
CTNND1-222	ENST00000529919	NEFL	P07196	543 aa		11.98	□□□□□ -0.49
CTNND1-222	ENST00000529919	UBTF	P17480	764 aa	Known RBP	11.96	□□□□□ -0.49
CTNND1-222	ENST00000529919	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.83	□□□□□ -0.51
CTNND1-222	ENST00000529919	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.83	□□□□□ -0.51
CTNND1-222	ENST00000529919	MYT1L	Q9UL68	1186 aa		11.81	□□□□□ -0.52
CTNND1-222	ENST00000529919	HRC	P23327	699 aa		11.75	□□□□□ -0.53
CTNND1-222	ENST00000529919	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.74	□□□□□ -0.53
CTNND1-222	ENST00000529919	FBLN2	P98095	1184 aa		11.7	□□□□□ -0.54
CTNND1-222	ENST00000529919	TRIM26	Q12899	539 aa	Predicted RBP	11.69	□□□□□ -0.54
CTNND1-222	ENST00000529919	DAXX	Q9UER7	740 aa	Predicted RBP	11.65	□□□□□ -0.54
CTNND1-222	ENST00000529919	CHIC1	Q5VXU3	224 aa		11.52	□□□□□ -0.57
CTNND1-222	ENST00000529919	POLR3GL	Q9BT43	218 aa		11.51	□□□□□ -0.57
CTNND1-222	ENST00000529919	ITGAE	P38570	1179 aa		11.5	□□□□□ -0.57
CTNND1-222	ENST00000529919	RTL5	Q5HYW3	569 aa	Predicted RBP	11.49	□□□□□ -0.57
CTNND1-222	ENST00000529919	SCRIB	Q14160	1630 aa		11.48	□□□□□ -0.57
CTNND1-222	ENST00000529919	LOC105371045	A0A1W2PR82	267 aa		11.48	□□□□□ -0.57
CTNND1-222	ENST00000529919	CNGB1	Q14028	1251 aa	Predicted RBP	11.48	□□□□□ -0.57
CTNND1-222	ENST00000529919	DIEXF	Q68CQ4	756 aa	Known RBP	11.45	□□□□□ -0.58
CTNND1-222	ENST00000529919	GTF3C3	Q9Y5Q9	886 aa		11.37	□□□□□ -0.59
CTNND1-222	ENST00000529919	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.36	□□□□□ -0.59
CTNND1-222	ENST00000529919	CLSPN	Q9HAW4	1339 aa		11.35	□□□□□ -0.59
CTNND1-222	ENST00000529919	RB1CC1	Q8TDY2	1594 aa		11.33	□□□□□ -0.6
CTNND1-222	ENST00000529919	BCAN	Q96GW7	911 aa		11.32	□□□□□ -0.6
CTNND1-222	ENST00000529919	NPM1	P06748	294 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
CTNND1-222	ENST00000529919	ARID3C	A6NKF2	412 aa		11.31	□□□□□ -0.6
CTNND1-222	ENST00000529919	CCDC180	Q9P1Z9	1646 aa		11.29	□□□□□ -0.6
CTNND1-222	ENST00000529919	P3H3	Q8IVL6	736 aa		11.28	□□□□□ -0.6
CTNND1-222	ENST00000529919	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.25	□□□□□ -0.61
CTNND1-222	ENST00000529919	FAM50A	Q14320	339 aa	Known RBP	11.25	□□□□□ -0.61
CTNND1-222	ENST00000529919	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.21	□□□□□ -0.62
CTNND1-222	ENST00000529919	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.2	□□□□□ -0.62
CTNND1-222	ENST00000529919	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.19	□□□□□ -0.62
CTNND1-222	ENST00000529919	ESF1	Q9H501	851 aa	Known RBP	11.19	□□□□□ -0.62
CTNND1-222	ENST00000529919	TRIM52	Q96A61	297 aa		11.17	□□□□□ -0.62
CTNND1-222	ENST00000529919	PLPPR3	Q6T4P5	718 aa		11.17	□□□□□ -0.62
CTNND1-222	ENST00000529919	NACAD	O15069	1562 aa		11.16	□□□□□ -0.62
CTNND1-222	ENST00000529919	CSRNP3	Q8WYN3	585 aa		11.16	□□□□□ -0.62
CTNND1-222	ENST00000529919	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.15	□□□□□ -0.62
CTNND1-222	ENST00000529919	ACIN1	Q9UKV3	1341 aa	Known RBP	11.15	□□□□□ -0.63
CTNND1-222	ENST00000529919	ERCC6	Q03468	1493 aa		11.12	□□□□□ -0.63
CTNND1-222	ENST00000529919	NEUROD1	Q13562	356 aa		11.12	□□□□□ -0.63
CTNND1-222	ENST00000529919	ANP32C	O43423	234 aa		11.11	□□□□□ -0.63
CTNND1-222	ENST00000529919	EIF5B	O60841	1220 aa	Known RBP	11.09	□□□□□ -0.63
CTNND1-222	ENST00000529919	ANP32A	P39687	249 aa	Known RBP	11.03	□□□□□ -0.64
CTNND1-222	ENST00000529919	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.02	□□□□□ -0.64
CTNND1-222	ENST00000529919	ZNF326	Q5BKZ1	582 aa	Known RBP	11.01	□□□□□ -0.65
CTNND1-222	ENST00000529919	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11	□□□□□ -0.65
CTNND1-222	ENST00000529919	STAG3	Q9UJ98	1225 aa		11	□□□□□ -0.65
CTNND1-222	ENST00000529919	TRH	P20396	242 aa	Predicted RBP	11	□□□□□ -0.65
CTNND1-222	ENST00000529919	BCL11A	Q9H165	835 aa		11	□□□□□ -0.65
CTNND1-222	ENST00000529919	NPM2	Q86SE8	214 aa	Known RBP	10.99	□□□□□ -0.65
CTNND1-222	ENST00000529919	KCNH8	Q96L42	1107 aa		10.97	□□□□□ -0.65
CTNND1-222	ENST00000529919	CHGA	P10645	457 aa	Known RBP	10.96	□□□□□ -0.66
CTNND1-222	ENST00000529919	FKBP8	Q14318	412 aa		10.95	□□□□□ -0.66
CTNND1-222	ENST00000529919	CANX	P27824	592 aa	Known RBP	10.94	□□□□□ -0.66
CTNND1-222	ENST00000529919	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.88	□□□□□ -0.67
CTNND1-222	ENST00000529919	RSF1	Q96T23	1441 aa	Predicted RBP	10.88	□□□□□ -0.67
CTNND1-222	ENST00000529919	TSPY4	P0CV99	314 aa		10.88	□□□□□ -0.67
CTNND1-222	ENST00000529919	TSPY10	P0CW01	314 aa		10.88	□□□□□ -0.67
CTNND1-222	ENST00000529919	GLIPR1L2	Q4G1C9	344 aa		10.87	□□□□□ -0.67
CTNND1-222	ENST00000529919	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.87	□□□□□ -0.67	1e-8	■■□□□ 13.5
CTNND1-222	ENST00000529919	PLEKHD1	A6NEE1	506 aa		10.87	□□□□□ -0.67
CTNND1-222	ENST00000529919	ANP32B	Q92688	251 aa	Known RBP	10.86	□□□□□ -0.67
CTNND1-222	ENST00000529919	NBR1	Q14596	966 aa		10.85	□□□□□ -0.67
CTNND1-222	ENST00000529919	CECR2	Q9BXF3	1484 aa		10.84	□□□□□ -0.67
CTNND1-222	ENST00000529919	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
CTNND1-222	ENST00000529919	SLC24A1	O60721	1099 aa		10.82	□□□□□ -0.68
CTNND1-222	ENST00000529919	HSP90AA1	P07900	732 aa	Known RBP	10.82	□□□□□ -0.68
CTNND1-222	ENST00000529919	CHIC2	Q9UKJ5	165 aa		10.82	□□□□□ -0.68
CTNND1-222	ENST00000529919	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.81	□□□□□ -0.68
CTNND1-222	ENST00000529919	PDS5B	Q9NTI5	1447 aa		10.81	□□□□□ -0.68
CTNND1-222	ENST00000529919	SCAF1	Q9H7N4	1312 aa	Known RBP	10.81	□□□□□ -0.68
CTNND1-222	ENST00000529919	MTUS2	Q5JR59	1369 aa		10.8	□□□□□ -0.68
CTNND1-222	ENST00000529919	NEFM	P07197	916 aa		10.8	□□□□□ -0.68
CTNND1-222	ENST00000529919	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.79	□□□□□ -0.68
CTNND1-222	ENST00000529919	DDX10	Q13206	875 aa	Known RBP	10.78	□□□□□ -0.68
CTNND1-222	ENST00000529919	ARX	Q96QS3	562 aa		10.77	□□□□□ -0.68
CTNND1-222	ENST00000529919	UPF2	Q9HAU5	1272 aa	Known RBP	10.77	□□□□□ -0.68
CTNND1-222	ENST00000529919	FAM9B	Q8IZU0	186 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms