RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-223ENST00000529986 NISCHQ9Y2I1 1504 aa12.78□□□□□ -0.36
CTNND1-223ENST00000529986 DCAF8L2P0C7V8 631 aa12.76□□□□□ -0.37
CTNND1-223ENST00000529986 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
CTNND1-223ENST00000529986 EHMT2Q96KQ7 1210 aa12.27□□□□□ -0.44
CTNND1-223ENST00000529986 PELP1Q8IZL8 1130 aaKnown RBP12.27□□□□□ -0.45
CTNND1-223ENST00000529986 SHROOM4Q9ULL8 1493 aa12.07□□□□□ -0.48
CTNND1-223ENST00000529986 MYT1Q01538 1121 aa12.06□□□□□ -0.48
CTNND1-223ENST00000529986 PCGF6Q9BYE7 350 aa12.03□□□□□ -0.48
CTNND1-223ENST00000529986 ERICH6Q7L0X2 663 aa11.92□□□□□ -0.5
CTNND1-223ENST00000529986 TTBK1Q5TCY1 1321 aaPredicted RBP11.9□□□□□ -0.5
CTNND1-223ENST00000529986 CENPBP07199 599 aaPredicted RBP11.87□□□□□ -0.51
CTNND1-223ENST00000529986 FAM9AQ8IZU1 332 aaPredicted RBP11.81□□□□□ -0.52
CTNND1-223ENST00000529986 APLP2Q06481 763 aa11.75□□□□□ -0.53
CTNND1-223ENST00000529986 YTHDC1Q96MU7 727 aaKnown RBP11.74□□□□□ -0.53
CTNND1-223ENST00000529986 CCER1Q8TC90 406 aaPredicted RBP11.7□□□□□ -0.54
CTNND1-223ENST00000529986 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
CTNND1-223ENST00000529986 RANGAP1P46060 587 aaPredicted RBP11.55□□□□□ -0.56
CTNND1-223ENST00000529986 NEFLP07196 543 aa11.54□□□□□ -0.56
CTNND1-223ENST00000529986 PPARGC1BQ86YN6 1023 aaKnown RBP11.46□□□□□ -0.58
CTNND1-223ENST00000529986 HRCP23327 699 aa11.43□□□□□ -0.58
CTNND1-223ENST00000529986 TRIM41Q8WV44 630 aa11.37□□□□□ -0.59
CTNND1-223ENST00000529986 ATP1B4Q9UN42 357 aaPredicted RBP11.34□□□□□ -0.59
CTNND1-223ENST00000529986 TRIM26Q12899 539 aaPredicted RBP11.28□□□□□ -0.6
CTNND1-223ENST00000529986 UBTFP17480 764 aaKnown RBP11.27□□□□□ -0.6
CTNND1-223ENST00000529986 DAXXQ9UER7 740 aaPredicted RBP11.24□□□□□ -0.61
CTNND1-223ENST00000529986 CNGB1Q14028 1251 aaPredicted RBP11.16□□□□□ -0.62
CTNND1-223ENST00000529986 LOC105371045A0A1W2PR82 267 aa11.14□□□□□ -0.63
CTNND1-223ENST00000529986 POLR3GLQ9BT43 218 aa11.13□□□□□ -0.63
CTNND1-223ENST00000529986 RTL5Q5HYW3 569 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-223ENST00000529986 GTF3C3Q9Y5Q9 886 aa11.11□□□□□ -0.63
CTNND1-223ENST00000529986 ITGAEP38570 1179 aa11.11□□□□□ -0.63
CTNND1-223ENST00000529986 DIEXFQ68CQ4 756 aaKnown RBP11.1□□□□□ -0.63
CTNND1-223ENST00000529986 BCANQ96GW7 911 aa11.08□□□□□ -0.64
CTNND1-223ENST00000529986 HNRNPUL2Q1KMD3 747 aaKnown RBP11.07□□□□□ -0.64
CTNND1-223ENST00000529986 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.07□□□□□ -0.64
CTNND1-223ENST00000529986 ZNF316A6NFI3 1004 aaPredicted RBP11□□□□□ -0.65
CTNND1-223ENST00000529986 CLSPNQ9HAW4 1339 aa10.94□□□□□ -0.66
CTNND1-223ENST00000529986 CHIC1Q5VXU3 224 aa10.94□□□□□ -0.66
CTNND1-223ENST00000529986 ACIN1Q9UKV3 1341 aaKnown RBP10.86□□□□□ -0.67
CTNND1-223ENST00000529986 CDK11AQ9UQ88 783 aaPredicted RBP10.84□□□□□ -0.67
CTNND1-223ENST00000529986 EIF5BO60841 1220 aaKnown RBP10.83□□□□□ -0.68
CTNND1-223ENST00000529986 SLC4A1APQ9BWU0 796 aaKnown RBP10.78□□□□□ -0.68
CTNND1-223ENST00000529986 NEUROD1Q13562 356 aa10.77□□□□□ -0.69
CTNND1-223ENST00000529986 MYT1LQ9UL68 1186 aa10.75□□□□□ -0.69
CTNND1-223ENST00000529986 NPM2Q86SE8 214 aaKnown RBP10.71□□□□□ -0.69
CTNND1-223ENST00000529986 CCDC180Q9P1Z9 1646 aa10.71□□□□□ -0.69
CTNND1-223ENST00000529986 ABCC9O60706 1549 aa10.71□□□□□ -0.7
CTNND1-223ENST00000529986 ANP32CO43423 234 aa10.7□□□□□ -0.7
CTNND1-223ENST00000529986 BCL11AQ9H165 835 aa10.69□□□□□ -0.7
CTNND1-223ENST00000529986 FAM50AQ14320 339 aaKnown RBP10.68□□□□□ -0.7
CTNND1-223ENST00000529986 ANP32AP39687 249 aaKnown RBP10.67□□□□□ -0.7
CTNND1-223ENST00000529986 ZCCHC6Q5VYS8 1495 aaKnown RBP10.65□□□□□ -0.7
CTNND1-223ENST00000529986 FKBP8Q14318 412 aa10.65□□□□□ -0.7
CTNND1-223ENST00000529986 SCAF1Q9H7N4 1312 aaKnown RBP10.64□□□□□ -0.71
CTNND1-223ENST00000529986 TRIM52Q96A61 297 aa10.63□□□□□ -0.71
CTNND1-223ENST00000529986 NBR1Q14596 966 aa10.62□□□□□ -0.71
CTNND1-223ENST00000529986 ZNF326Q5BKZ1 582 aaKnown RBP10.61□□□□□ -0.71
CTNND1-223ENST00000529986 CANXP27824 592 aaKnown RBP10.55□□□□□ -0.72
CTNND1-223ENST00000529986 ARXQ96QS3 562 aa10.53□□□□□ -0.72
CTNND1-223ENST00000529986 GLIPR1L2Q4G1C9 344 aa10.53□□□□□ -0.72
CTNND1-223ENST00000529986 ZBTB47Q9UFB7 747 aaPredicted RBP10.53□□□□□ -0.72
CTNND1-223ENST00000529986 SCRIBQ14160 1630 aa10.5□□□□□ -0.73
CTNND1-223ENST00000529986 PABPN1Q86U42 306 aaKnown RBP eCLIP10.49□□□□□ -0.734e-7■□□□□ 8.4
CTNND1-223ENST00000529986 HNRNPUQ00839 825 aaKnown RBP eCLIP10.46□□□□□ -0.73
CTNND1-223ENST00000529986 ANP32BQ92688 251 aaKnown RBP10.45□□□□□ -0.74
CTNND1-223ENST00000529986 IRX6P78412 446 aaPredicted RBP10.45□□□□□ -0.74
CTNND1-223ENST00000529986 SLC24A1O60721 1099 aa10.43□□□□□ -0.74
CTNND1-223ENST00000529986 DDX10Q13206 875 aaKnown RBP10.42□□□□□ -0.74
CTNND1-223ENST00000529986 FAM9BQ8IZU0 186 aa10.42□□□□□ -0.74
CTNND1-223ENST00000529986 HSP90AA1P07900 732 aaKnown RBP10.42□□□□□ -0.74
CTNND1-223ENST00000529986 SALL2Q9Y467 1007 aaPredicted RBP10.42□□□□□ -0.74
CTNND1-223ENST00000529986 MIER1Q8N108 512 aa10.39□□□□□ -0.75
CTNND1-223ENST00000529986 CCDC136Q96JN2 1154 aa10.38□□□□□ -0.75
CTNND1-223ENST00000529986 ANP32EQ9BTT0 268 aa10.38□□□□□ -0.75
CTNND1-223ENST00000529986 RTN4Q9NQC3 1192 aaKnown RBP10.37□□□□□ -0.75
CTNND1-223ENST00000529986 UPF2Q9HAU5 1272 aaKnown RBP10.34□□□□□ -0.75
CTNND1-223ENST00000529986 ARID3CA6NKF2 412 aa10.31□□□□□ -0.76
CTNND1-223ENST00000529986 P3H3Q8IVL6 736 aa10.31□□□□□ -0.76
CTNND1-223ENST00000529986 DCAF1Q9Y4B6 1507 aa10.3□□□□□ -0.76
CTNND1-223ENST00000529986 RB1CC1Q8TDY2 1594 aa10.29□□□□□ -0.76
CTNND1-223ENST00000529986 HIRIP3Q9BW71 556 aaPredicted RBP10.29□□□□□ -0.76
CTNND1-223ENST00000529986 NEFMP07197 916 aa10.28□□□□□ -0.76
CTNND1-223ENST00000529986 CSRNP3Q8WYN3 585 aa10.28□□□□□ -0.76
CTNND1-223ENST00000529986 SENP3-EIF4A1A0A087X0R7 540 aa10.25□□□□□ -0.77
CTNND1-223ENST00000529986 TONSLQ96HA7 1378 aa10.25□□□□□ -0.77
CTNND1-223ENST00000529986 NACADO15069 1562 aa10.25□□□□□ -0.77
CTNND1-223ENST00000529986 MRS2Q9HD23 443 aa10.24□□□□□ -0.77
CTNND1-223ENST00000529986 TMC1Q8TDI8 760 aa10.23□□□□□ -0.77
CTNND1-223ENST00000529986 TRIM44Q96DX7 344 aaPredicted RBP10.21□□□□□ -0.77
CTNND1-223ENST00000529986 LAS1LQ9Y4W2 734 aaKnown RBP10.21□□□□□ -0.77
CTNND1-223ENST00000529986 ZNF777Q9ULD5 760 aaPredicted RBP10.2□□□□□ -0.78
CTNND1-223ENST00000529986 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.2□□□□□ -0.78
CTNND1-223ENST00000529986 NAP1L5Q96NT1 182 aaPredicted RBP10.2□□□□□ -0.78
CTNND1-223ENST00000529986 SUPT16HQ9Y5B9 1047 aaKnown RBP10.17□□□□□ -0.78
CTNND1-223ENST00000529986 RSF1Q96T23 1441 aaPredicted RBP10.16□□□□□ -0.78
CTNND1-223ENST00000529986 DDRGK1Q96HY6 314 aa10.15□□□□□ -0.78
CTNND1-223ENST00000529986 NCLP19338 710 aaKnown RBP10.14□□□□□ -0.79
CTNND1-223ENST00000529986 TNNT2P45379 298 aaPredicted RBP10.13□□□□□ -0.79
CTNND1-223ENST00000529986 FBLN2P98095 1184 aa10.13□□□□□ -0.79
CTNND1-223ENST00000529986 ERICH6BQ5W0A0 696 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms