RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-223	ENST00000529986	NISCH	Q9Y2I1	1504 aa		12.78	□□□□□ -0.36
CTNND1-223	ENST00000529986	DCAF8L2	P0C7V8	631 aa		12.76	□□□□□ -0.37
CTNND1-223	ENST00000529986	SUPT5H	O00267	1087 aa	Known RBP	12.44	□□□□□ -0.42
CTNND1-223	ENST00000529986	EHMT2	Q96KQ7	1210 aa		12.27	□□□□□ -0.44
CTNND1-223	ENST00000529986	PELP1	Q8IZL8	1130 aa	Known RBP	12.27	□□□□□ -0.45
CTNND1-223	ENST00000529986	SHROOM4	Q9ULL8	1493 aa		12.07	□□□□□ -0.48
CTNND1-223	ENST00000529986	MYT1	Q01538	1121 aa		12.06	□□□□□ -0.48
CTNND1-223	ENST00000529986	PCGF6	Q9BYE7	350 aa		12.03	□□□□□ -0.48
CTNND1-223	ENST00000529986	ERICH6	Q7L0X2	663 aa		11.92	□□□□□ -0.5
CTNND1-223	ENST00000529986	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.9	□□□□□ -0.5
CTNND1-223	ENST00000529986	CENPB	P07199	599 aa	Predicted RBP	11.87	□□□□□ -0.51
CTNND1-223	ENST00000529986	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.81	□□□□□ -0.52
CTNND1-223	ENST00000529986	APLP2	Q06481	763 aa		11.75	□□□□□ -0.53
CTNND1-223	ENST00000529986	YTHDC1	Q96MU7	727 aa	Known RBP	11.74	□□□□□ -0.53
CTNND1-223	ENST00000529986	CCER1	Q8TC90	406 aa	Predicted RBP	11.7	□□□□□ -0.54
CTNND1-223	ENST00000529986	ZEB1	P37275	1124 aa	Predicted RBP	11.65	□□□□□ -0.54
CTNND1-223	ENST00000529986	RANGAP1	P46060	587 aa	Predicted RBP	11.55	□□□□□ -0.56
CTNND1-223	ENST00000529986	NEFL	P07196	543 aa		11.54	□□□□□ -0.56
CTNND1-223	ENST00000529986	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.46	□□□□□ -0.58
CTNND1-223	ENST00000529986	HRC	P23327	699 aa		11.43	□□□□□ -0.58
CTNND1-223	ENST00000529986	TRIM41	Q8WV44	630 aa		11.37	□□□□□ -0.59
CTNND1-223	ENST00000529986	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.34	□□□□□ -0.59
CTNND1-223	ENST00000529986	TRIM26	Q12899	539 aa	Predicted RBP	11.28	□□□□□ -0.6
CTNND1-223	ENST00000529986	UBTF	P17480	764 aa	Known RBP	11.27	□□□□□ -0.6
CTNND1-223	ENST00000529986	DAXX	Q9UER7	740 aa	Predicted RBP	11.24	□□□□□ -0.61
CTNND1-223	ENST00000529986	CNGB1	Q14028	1251 aa	Predicted RBP	11.16	□□□□□ -0.62
CTNND1-223	ENST00000529986	LOC105371045	A0A1W2PR82	267 aa		11.14	□□□□□ -0.63
CTNND1-223	ENST00000529986	POLR3GL	Q9BT43	218 aa		11.13	□□□□□ -0.63
CTNND1-223	ENST00000529986	RTL5	Q5HYW3	569 aa	Predicted RBP	11.12	□□□□□ -0.63
CTNND1-223	ENST00000529986	GTF3C3	Q9Y5Q9	886 aa		11.11	□□□□□ -0.63
CTNND1-223	ENST00000529986	ITGAE	P38570	1179 aa		11.11	□□□□□ -0.63
CTNND1-223	ENST00000529986	DIEXF	Q68CQ4	756 aa	Known RBP	11.1	□□□□□ -0.63
CTNND1-223	ENST00000529986	BCAN	Q96GW7	911 aa		11.08	□□□□□ -0.64
CTNND1-223	ENST00000529986	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.07	□□□□□ -0.64
CTNND1-223	ENST00000529986	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.07	□□□□□ -0.64
CTNND1-223	ENST00000529986	ZNF316	A6NFI3	1004 aa	Predicted RBP	11	□□□□□ -0.65
CTNND1-223	ENST00000529986	CLSPN	Q9HAW4	1339 aa		10.94	□□□□□ -0.66
CTNND1-223	ENST00000529986	CHIC1	Q5VXU3	224 aa		10.94	□□□□□ -0.66
CTNND1-223	ENST00000529986	ACIN1	Q9UKV3	1341 aa	Known RBP	10.86	□□□□□ -0.67
CTNND1-223	ENST00000529986	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.84	□□□□□ -0.67
CTNND1-223	ENST00000529986	EIF5B	O60841	1220 aa	Known RBP	10.83	□□□□□ -0.68
CTNND1-223	ENST00000529986	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.78	□□□□□ -0.68
CTNND1-223	ENST00000529986	NEUROD1	Q13562	356 aa		10.77	□□□□□ -0.69
CTNND1-223	ENST00000529986	MYT1L	Q9UL68	1186 aa		10.75	□□□□□ -0.69
CTNND1-223	ENST00000529986	NPM2	Q86SE8	214 aa	Known RBP	10.71	□□□□□ -0.69
CTNND1-223	ENST00000529986	CCDC180	Q9P1Z9	1646 aa		10.71	□□□□□ -0.69
CTNND1-223	ENST00000529986	ABCC9	O60706	1549 aa		10.71	□□□□□ -0.7
CTNND1-223	ENST00000529986	ANP32C	O43423	234 aa		10.7	□□□□□ -0.7
CTNND1-223	ENST00000529986	BCL11A	Q9H165	835 aa		10.69	□□□□□ -0.7
CTNND1-223	ENST00000529986	FAM50A	Q14320	339 aa	Known RBP	10.68	□□□□□ -0.7
CTNND1-223	ENST00000529986	ANP32A	P39687	249 aa	Known RBP	10.67	□□□□□ -0.7
CTNND1-223	ENST00000529986	ZCCHC6	Q5VYS8	1495 aa	Known RBP	10.65	□□□□□ -0.7
CTNND1-223	ENST00000529986	FKBP8	Q14318	412 aa		10.65	□□□□□ -0.7
CTNND1-223	ENST00000529986	SCAF1	Q9H7N4	1312 aa	Known RBP	10.64	□□□□□ -0.71
CTNND1-223	ENST00000529986	TRIM52	Q96A61	297 aa		10.63	□□□□□ -0.71
CTNND1-223	ENST00000529986	NBR1	Q14596	966 aa		10.62	□□□□□ -0.71
CTNND1-223	ENST00000529986	ZNF326	Q5BKZ1	582 aa	Known RBP	10.61	□□□□□ -0.71
CTNND1-223	ENST00000529986	CANX	P27824	592 aa	Known RBP	10.55	□□□□□ -0.72
CTNND1-223	ENST00000529986	ARX	Q96QS3	562 aa		10.53	□□□□□ -0.72
CTNND1-223	ENST00000529986	GLIPR1L2	Q4G1C9	344 aa		10.53	□□□□□ -0.72
CTNND1-223	ENST00000529986	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.53	□□□□□ -0.72
CTNND1-223	ENST00000529986	SCRIB	Q14160	1630 aa		10.5	□□□□□ -0.73
CTNND1-223	ENST00000529986	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.49	□□□□□ -0.73	4e-7	■□□□□ 8.4
CTNND1-223	ENST00000529986	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.46	□□□□□ -0.73
CTNND1-223	ENST00000529986	ANP32B	Q92688	251 aa	Known RBP	10.45	□□□□□ -0.74
CTNND1-223	ENST00000529986	IRX6	P78412	446 aa	Predicted RBP	10.45	□□□□□ -0.74
CTNND1-223	ENST00000529986	SLC24A1	O60721	1099 aa		10.43	□□□□□ -0.74
CTNND1-223	ENST00000529986	DDX10	Q13206	875 aa	Known RBP	10.42	□□□□□ -0.74
CTNND1-223	ENST00000529986	FAM9B	Q8IZU0	186 aa		10.42	□□□□□ -0.74
CTNND1-223	ENST00000529986	HSP90AA1	P07900	732 aa	Known RBP	10.42	□□□□□ -0.74
CTNND1-223	ENST00000529986	SALL2	Q9Y467	1007 aa	Predicted RBP	10.42	□□□□□ -0.74
CTNND1-223	ENST00000529986	MIER1	Q8N108	512 aa		10.39	□□□□□ -0.75
CTNND1-223	ENST00000529986	CCDC136	Q96JN2	1154 aa		10.38	□□□□□ -0.75
CTNND1-223	ENST00000529986	ANP32E	Q9BTT0	268 aa		10.38	□□□□□ -0.75
CTNND1-223	ENST00000529986	RTN4	Q9NQC3	1192 aa	Known RBP	10.37	□□□□□ -0.75
CTNND1-223	ENST00000529986	UPF2	Q9HAU5	1272 aa	Known RBP	10.34	□□□□□ -0.75
CTNND1-223	ENST00000529986	ARID3C	A6NKF2	412 aa		10.31	□□□□□ -0.76
CTNND1-223	ENST00000529986	P3H3	Q8IVL6	736 aa		10.31	□□□□□ -0.76
CTNND1-223	ENST00000529986	DCAF1	Q9Y4B6	1507 aa		10.3	□□□□□ -0.76
CTNND1-223	ENST00000529986	RB1CC1	Q8TDY2	1594 aa		10.29	□□□□□ -0.76
CTNND1-223	ENST00000529986	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.29	□□□□□ -0.76
CTNND1-223	ENST00000529986	NEFM	P07197	916 aa		10.28	□□□□□ -0.76
CTNND1-223	ENST00000529986	CSRNP3	Q8WYN3	585 aa		10.28	□□□□□ -0.76
CTNND1-223	ENST00000529986	SENP3-EIF4A1	A0A087X0R7	540 aa		10.25	□□□□□ -0.77
CTNND1-223	ENST00000529986	TONSL	Q96HA7	1378 aa		10.25	□□□□□ -0.77
CTNND1-223	ENST00000529986	NACAD	O15069	1562 aa		10.25	□□□□□ -0.77
CTNND1-223	ENST00000529986	MRS2	Q9HD23	443 aa		10.24	□□□□□ -0.77
CTNND1-223	ENST00000529986	TMC1	Q8TDI8	760 aa		10.23	□□□□□ -0.77
CTNND1-223	ENST00000529986	TRIM44	Q96DX7	344 aa	Predicted RBP	10.21	□□□□□ -0.77
CTNND1-223	ENST00000529986	LAS1L	Q9Y4W2	734 aa	Known RBP	10.21	□□□□□ -0.77
CTNND1-223	ENST00000529986	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.2	□□□□□ -0.78
CTNND1-223	ENST00000529986	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.2	□□□□□ -0.78
CTNND1-223	ENST00000529986	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.2	□□□□□ -0.78
CTNND1-223	ENST00000529986	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.17	□□□□□ -0.78
CTNND1-223	ENST00000529986	RSF1	Q96T23	1441 aa	Predicted RBP	10.16	□□□□□ -0.78
CTNND1-223	ENST00000529986	DDRGK1	Q96HY6	314 aa		10.15	□□□□□ -0.78
CTNND1-223	ENST00000529986	NCL	P19338	710 aa	Known RBP	10.14	□□□□□ -0.79
CTNND1-223	ENST00000529986	TNNT2	P45379	298 aa	Predicted RBP	10.13	□□□□□ -0.79
CTNND1-223	ENST00000529986	FBLN2	P98095	1184 aa		10.13	□□□□□ -0.79
CTNND1-223	ENST00000529986	ERICH6B	Q5W0A0	696 aa		10.13	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms