RNA–Protein interactions for RNA: ENST00000527467.5

CTNND1-216, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-216ENST00000527467 NISCHQ9Y2I1 1504 aa12.71□□□□□ -0.37
CTNND1-216ENST00000527467 DCAF8L2P0C7V8 631 aa12.46□□□□□ -0.42
CTNND1-216ENST00000527467 PELP1Q8IZL8 1130 aaKnown RBP12.15□□□□□ -0.46
CTNND1-216ENST00000527467 MYT1Q01538 1121 aa11.75□□□□□ -0.53
CTNND1-216ENST00000527467 ABCC9O60706 1549 aa11.66□□□□□ -0.54
CTNND1-216ENST00000527467 ERICH6Q7L0X2 663 aa11.66□□□□□ -0.54
CTNND1-216ENST00000527467 CCER1Q8TC90 406 aaPredicted RBP11.55□□□□□ -0.56
CTNND1-216ENST00000527467 FAM9AQ8IZU1 332 aaPredicted RBP11.45□□□□□ -0.58
CTNND1-216ENST00000527467 CENPBP07199 599 aaPredicted RBP11.25□□□□□ -0.61
CTNND1-216ENST00000527467 YTHDC1Q96MU7 727 aaKnown RBP11.18□□□□□ -0.62
CTNND1-216ENST00000527467 TTBK1Q5TCY1 1321 aaPredicted RBP11.17□□□□□ -0.62
CTNND1-216ENST00000527467 PABPN1Q86U42 306 aaKnown RBP eCLIP11.14□□□□□ -0.634e-7■□□□□ 8.4
CTNND1-216ENST00000527467 RB1CC1Q8TDY2 1594 aa11.11□□□□□ -0.63
CTNND1-216ENST00000527467 CCDC180Q9P1Z9 1646 aa11.11□□□□□ -0.63
CTNND1-216ENST00000527467 NEFLP07196 543 aa11.04□□□□□ -0.64
CTNND1-216ENST00000527467 DAXXQ9UER7 740 aaPredicted RBP10.94□□□□□ -0.66
CTNND1-216ENST00000527467 APLP2Q06481 763 aa10.93□□□□□ -0.66
CTNND1-216ENST00000527467 NACADO15069 1562 aa10.89□□□□□ -0.67
CTNND1-216ENST00000527467 SUPT5HO00267 1087 aaKnown RBP10.85□□□□□ -0.67
CTNND1-216ENST00000527467 ZEB1P37275 1124 aaPredicted RBP10.82□□□□□ -0.68
CTNND1-216ENST00000527467 SHROOM4Q9ULL8 1493 aa10.78□□□□□ -0.68
CTNND1-216ENST00000527467 EHMT2Q96KQ7 1210 aa10.78□□□□□ -0.68
CTNND1-216ENST00000527467 RTL5Q5HYW3 569 aaPredicted RBP10.77□□□□□ -0.69
CTNND1-216ENST00000527467 ERCC6Q03468 1493 aa10.75□□□□□ -0.69
CTNND1-216ENST00000527467 PCGF6Q9BYE7 350 aa10.73□□□□□ -0.69
CTNND1-216ENST00000527467 SCRIBQ14160 1630 aa10.63□□□□□ -0.71
CTNND1-216ENST00000527467 NPM1P06748 294 aaKnown RBP eCLIP10.62□□□□□ -0.71
CTNND1-216ENST00000527467 ZNF316A6NFI3 1004 aaPredicted RBP10.62□□□□□ -0.71
CTNND1-216ENST00000527467 FBLN2P98095 1184 aa10.59□□□□□ -0.71
CTNND1-216ENST00000527467 AEBP2Q6ZN18 517 aaPredicted RBP10.59□□□□□ -0.71
CTNND1-216ENST00000527467 CECR2Q9BXF3 1484 aa10.55□□□□□ -0.72
CTNND1-216ENST00000527467 GLIPR1L2Q4G1C9 344 aa10.53□□□□□ -0.72
CTNND1-216ENST00000527467 TRHP20396 242 aaPredicted RBP10.49□□□□□ -0.73
CTNND1-216ENST00000527467 MYT1LQ9UL68 1186 aa10.48□□□□□ -0.73
CTNND1-216ENST00000527467 TRIM41Q8WV44 630 aa10.48□□□□□ -0.73
CTNND1-216ENST00000527467 CLSPNQ9HAW4 1339 aa10.44□□□□□ -0.74
CTNND1-216ENST00000527467 EIF5BO60841 1220 aaKnown RBP10.44□□□□□ -0.74
CTNND1-216ENST00000527467 PDS5BQ9NTI5 1447 aa10.39□□□□□ -0.75
CTNND1-216ENST00000527467 MYO15BQ96JP2 1530 aa10.39□□□□□ -0.75
CTNND1-216ENST00000527467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.38□□□□□ -0.75
CTNND1-216ENST00000527467 HNRNPUL2Q1KMD3 747 aaKnown RBP10.38□□□□□ -0.75
CTNND1-216ENST00000527467 CHMP7Q8WUX9 453 aaPredicted RBP10.34□□□□□ -0.75
CTNND1-216ENST00000527467 ZCCHC6Q5VYS8 1495 aaKnown RBP10.33□□□□□ -0.76
CTNND1-216ENST00000527467 BAZ1BQ9UIG0 1483 aaKnown RBP10.31□□□□□ -0.76
CTNND1-216ENST00000527467 ESF1Q9H501 851 aaKnown RBP10.31□□□□□ -0.76
CTNND1-216ENST00000527467 ATP1B4Q9UN42 357 aaPredicted RBP10.3□□□□□ -0.76
CTNND1-216ENST00000527467 DCAF1Q9Y4B6 1507 aa10.29□□□□□ -0.76
CTNND1-216ENST00000527467 OSCARQ8IYS5 282 aa10.28□□□□□ -0.76
CTNND1-216ENST00000527467 SMARCA2P51531 1590 aa10.24□□□□□ -0.77
CTNND1-216ENST00000527467 POLR3GLQ9BT43 218 aa10.23□□□□□ -0.77
CTNND1-216ENST00000527467 ANP32BQ92688 251 aaKnown RBP10.22□□□□□ -0.77
CTNND1-216ENST00000527467 HRCP23327 699 aa10.2□□□□□ -0.78
CTNND1-216ENST00000527467 RANGAP1P46060 587 aaPredicted RBP10.2□□□□□ -0.78
CTNND1-216ENST00000527467 CDK11AQ9UQ88 783 aaPredicted RBP10.2□□□□□ -0.78
CTNND1-216ENST00000527467 ZBTB47Q9UFB7 747 aaPredicted RBP10.16□□□□□ -0.78
CTNND1-216ENST00000527467 DNAJC5BQ9UF47 199 aa10.11□□□□□ -0.79
CTNND1-216ENST00000527467 ANP32AP39687 249 aaKnown RBP10.11□□□□□ -0.79
CTNND1-216ENST00000527467 BAZ1AQ9NRL2 1556 aaPredicted RBP10.11□□□□□ -0.79
CTNND1-216ENST00000527467 CNGB1Q14028 1251 aaPredicted RBP10.09□□□□□ -0.79
CTNND1-216ENST00000527467 TNNT2P45379 298 aaPredicted RBP10.09□□□□□ -0.79
CTNND1-216ENST00000527467 UBTFP17480 764 aaKnown RBP10.08□□□□□ -0.8
CTNND1-216ENST00000527467 BCANQ96GW7 911 aa10.07□□□□□ -0.8
CTNND1-216ENST00000527467 EIF4G1Q04637 1599 aaKnown RBP10.06□□□□□ -0.8
CTNND1-216ENST00000527467 CC2D2AQ9P2K1 1620 aa10.05□□□□□ -0.8
CTNND1-216ENST00000527467 TRIM26Q12899 539 aaPredicted RBP10.04□□□□□ -0.8
CTNND1-216ENST00000527467 GTF3C3Q9Y5Q9 886 aa10.03□□□□□ -0.8
CTNND1-216ENST00000527467 CUX2O14529 1486 aa10.03□□□□□ -0.8
CTNND1-216ENST00000527467 CEP164Q9UPV0 1460 aa10.03□□□□□ -0.8
CTNND1-216ENST00000527467 SLC4A1APQ9BWU0 796 aaKnown RBP10.02□□□□□ -0.8
CTNND1-216ENST00000527467 ABCC8Q09428 1581 aa10.01□□□□□ -0.81
CTNND1-216ENST00000527467 ARID4BQ4LE39 1312 aaPredicted RBP10□□□□□ -0.81
CTNND1-216ENST00000527467 CADPSQ9ULU8 1353 aa10□□□□□ -0.81
CTNND1-216ENST00000527467 DIEXFQ68CQ4 756 aaKnown RBP10□□□□□ -0.81
CTNND1-216ENST00000527467 CYB5RLQ6IPT4 315 aa9.99□□□□□ -0.81
CTNND1-216ENST00000527467 CDK11BP21127 795 aaKnown RBP9.98□□□□□ -0.81
CTNND1-216ENST00000527467 DNAJC5Q9H3Z4 198 aa9.97□□□□□ -0.81
CTNND1-216ENST00000527467 HSP90AA1P07900 732 aaKnown RBP9.94□□□□□ -0.82
CTNND1-216ENST00000527467 NPM2Q86SE8 214 aaKnown RBP9.93□□□□□ -0.82
CTNND1-216ENST00000527467 NCAPD3P42695 1498 aa9.93□□□□□ -0.82
CTNND1-216ENST00000527467 CANXP27824 592 aaKnown RBP9.93□□□□□ -0.82
CTNND1-216ENST00000527467 TRIM44Q96DX7 344 aaPredicted RBP9.91□□□□□ -0.82
CTNND1-216ENST00000527467 PLPPR3Q6T4P5 718 aa9.9□□□□□ -0.82
CTNND1-216ENST00000527467 MRC2Q9UBG0 1479 aa9.9□□□□□ -0.82
CTNND1-216ENST00000527467 ATAD2BQ9ULI0 1458 aa9.9□□□□□ -0.82
CTNND1-216ENST00000527467 PPARGC1BQ86YN6 1023 aaKnown RBP9.89□□□□□ -0.83
CTNND1-216ENST00000527467 ITGAEP38570 1179 aa9.89□□□□□ -0.83
CTNND1-216ENST00000527467 BCL11AQ9H165 835 aa9.88□□□□□ -0.83
CTNND1-216ENST00000527467 CARMIL2Q6F5E8 1435 aa9.87□□□□□ -0.83
CTNND1-216ENST00000527467 FOXD1Q16676 465 aa9.87□□□□□ -0.83
CTNND1-216ENST00000527467 UPF2Q9HAU5 1272 aaKnown RBP9.87□□□□□ -0.83
CTNND1-216ENST00000527467 CHIC1Q5VXU3 224 aa9.86□□□□□ -0.83
CTNND1-216ENST00000527467 STAG3Q9UJ98 1225 aa9.84□□□□□ -0.83
CTNND1-216ENST00000527467 ANP32CO43423 234 aa9.84□□□□□ -0.83
CTNND1-216ENST00000527467 FANCD2Q9BXW9 1451 aa9.83□□□□□ -0.84
CTNND1-216ENST00000527467 NEFMP07197 916 aa9.82□□□□□ -0.84
CTNND1-216ENST00000527467 NCLP19338 710 aaKnown RBP9.81□□□□□ -0.84
CTNND1-216ENST00000527467 NBR1Q14596 966 aa9.81□□□□□ -0.84
CTNND1-216ENST00000527467 ARXQ96QS3 562 aa9.81□□□□□ -0.84
CTNND1-216ENST00000527467 SOGA1O94964 1423 aa9.79□□□□□ -0.84
CTNND1-216ENST00000527467 WRNQ14191 1432 aaPredicted RBP eCLIP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms