RNA–Protein interactions for RNA: ENST00000417101.1

ACTB-203, Transcript of actin beta, humanhuman

TSL 4

Gene ACTB, Length 472 nt, Biotype protein coding, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-203ENST00000417101 NISCHQ9Y2I1 1504 aa54.34■■■■■ 6.29
ACTB-203ENST00000417101 CCDC180Q9P1Z9 1646 aa48.62■■■■■ 5.37
ACTB-203ENST00000417101 ABCC9O60706 1549 aa48.58■■■■■ 5.37
ACTB-203ENST00000417101 RB1CC1Q8TDY2 1594 aa46.26■■■■■ 5
ACTB-203ENST00000417101 NACADO15069 1562 aa45.97■■■■■ 4.95
ACTB-203ENST00000417101 DCAF8L2P0C7V8 631 aa45.91■■■■■ 4.94
ACTB-203ENST00000417101 DNAJC5BQ9UF47 199 aa45.46■■■■■ 4.87
ACTB-203ENST00000417101 MYO15BQ96JP2 1530 aa45.37■■■■■ 4.85
ACTB-203ENST00000417101 PABPN1Q86U42 306 aaKnown RBP eCLIP45.3■■■■■ 4.84
ACTB-203ENST00000417101 UNC13AQ9UPW8 1703 aa45.15■■■■■ 4.82
ACTB-203ENST00000417101 ZCCHC6Q5VYS8 1495 aaKnown RBP45.06■■■■■ 4.8
ACTB-203ENST00000417101 BICRAQ9NZM4 1560 aa44.91■■■■■ 4.78
ACTB-203ENST00000417101 DCAF1Q9Y4B6 1507 aa44.86■■■■■ 4.77
ACTB-203ENST00000417101 SCRIBQ14160 1630 aa44.39■■■■■ 4.7
ACTB-203ENST00000417101 SHROOM4Q9ULL8 1493 aa44.29■■■■■ 4.68
ACTB-203ENST00000417101 CC2D2AQ9P2K1 1620 aa43.85■■■■■ 4.61
ACTB-203ENST00000417101 EIF4G1Q04637 1599 aaKnown RBP43.8■■■■■ 4.6
ACTB-203ENST00000417101 CECR2Q9BXF3 1484 aa43.74■■■■■ 4.59
ACTB-203ENST00000417101 NCAPD3P42695 1498 aa42.47■■■■■ 4.39
ACTB-203ENST00000417101 ATAD2BQ9ULI0 1458 aa42.37■■■■■ 4.37
ACTB-203ENST00000417101 SMARCA4P51532 1647 aa42.34■■■■■ 4.37
ACTB-203ENST00000417101 SMARCA2P51531 1590 aa42.24■■■■■ 4.35
ACTB-203ENST00000417101 BAZ1AQ9NRL2 1556 aaPredicted RBP42.16■■■■■ 4.34
ACTB-203ENST00000417101 HMGXB3Q12766 1538 aa42.14■■■■■ 4.34
ACTB-203ENST00000417101 BAZ1BQ9UIG0 1483 aaKnown RBP41.98■■■■■ 4.31
ACTB-203ENST00000417101 ERCC6Q03468 1493 aa41.94■■■■■ 4.3
ACTB-203ENST00000417101 PEG3Q9GZU2 1588 aa41.91■■■■■ 4.3
ACTB-203ENST00000417101 MROH2BQ7Z745 1585 aa41.88■■■■■ 4.3
ACTB-203ENST00000417101 NESP48681 1621 aa41.77■■■■■ 4.28
ACTB-203ENST00000417101 CUX2O14529 1486 aa41.77■■■■■ 4.28
ACTB-203ENST00000417101 DNAJC5Q9H3Z4 198 aa41.62■■■■■ 4.25
ACTB-203ENST00000417101 LAMC3Q9Y6N6 1575 aa41.46■■■■■ 4.23
ACTB-203ENST00000417101 WIZO95785 1651 aa41.37■■■■■ 4.21
ACTB-203ENST00000417101 PDS5BQ9NTI5 1447 aa41.27■■■■■ 4.2
ACTB-203ENST00000417101 THOC2Q8NI27 1593 aaKnown RBP41.26■■■■■ 4.2
ACTB-203ENST00000417101 CADPSQ9ULU8 1353 aa41.21■■■■■ 4.19
ACTB-203ENST00000417101 KIF21AQ7Z4S6 1674 aa41.18■■■■■ 4.18
ACTB-203ENST00000417101 RSF1Q96T23 1441 aaPredicted RBP41.1■■■■■ 4.17
ACTB-203ENST00000417101 MRC2Q9UBG0 1479 aa40.89■■■■■ 4.14
ACTB-203ENST00000417101 TOP2AP11388 1531 aaKnown RBP40.86■■■■■ 4.13
ACTB-203ENST00000417101 CFTRP13569 1480 aa40.76■■■■■ 4.12
ACTB-203ENST00000417101 CEP164Q9UPV0 1460 aa40.76■■■■■ 4.12
ACTB-203ENST00000417101 WDR62O43379 1518 aa40.75■■■■■ 4.11
ACTB-203ENST00000417101 FANCD2Q9BXW9 1451 aa40.74■■■■■ 4.11
ACTB-203ENST00000417101 CCDC88BA6NC98 1476 aa40.43■■■■■ 4.06
ACTB-203ENST00000417101 URB2Q14146 1524 aaKnown RBP40.39■■■■■ 4.06
ACTB-203ENST00000417101 PRDM2Q13029 1718 aa40.25■■■■■ 4.03
ACTB-203ENST00000417101 TOPBP1Q92547 1522 aa39.97■■■■□ 3.99
ACTB-203ENST00000417101 OSCARQ8IYS5 282 aa39.94■■■■□ 3.98
ACTB-203ENST00000417101 IFT140Q96RY7 1462 aa39.94■■■■□ 3.98
ACTB-203ENST00000417101 TRIM41Q8WV44 630 aa39.9■■■■□ 3.98
ACTB-203ENST00000417101 ABCC8Q09428 1581 aa39.88■■■■□ 3.97
ACTB-203ENST00000417101 ZNF608Q9ULD9 1512 aaPredicted RBP39.87■■■■□ 3.97
ACTB-203ENST00000417101 DNMBPQ6XZF7 1577 aa39.82■■■■□ 3.97
ACTB-203ENST00000417101 EIF4G3O43432 1585 aaKnown RBP39.62■■■■□ 3.93
ACTB-203ENST00000417101 TARBP1Q13395 1621 aaKnown RBP39.58■■■■□ 3.93
ACTB-203ENST00000417101 POLA1P09884 1462 aaPredicted RBP39.58■■■■□ 3.93
ACTB-203ENST00000417101 AQRO60306 1485 aaKnown RBP eCLIP39.55■■■■□ 3.921e-28■■■■■ 37.4
ACTB-203ENST00000417101 SUPT5HO00267 1087 aaKnown RBP39.47■■■■□ 3.91
ACTB-203ENST00000417101 RAD54L2Q9Y4B4 1467 aa39.45■■■■□ 3.91
ACTB-203ENST00000417101 SOGA1O94964 1423 aa39.42■■■■□ 3.9
ACTB-203ENST00000417101 FGD5Q6ZNL6 1462 aa39.36■■■■□ 3.89
ACTB-203ENST00000417101 RIMBP3CA6NJZ7 1639 aa39.35■■■■□ 3.89
ACTB-203ENST00000417101 RIMBP3BA6NNM3 1639 aa39.35■■■■□ 3.89
ACTB-203ENST00000417101 RIMBP3Q9UFD9 1639 aa39.35■■■■□ 3.89
ACTB-203ENST00000417101 CUX1P39880 1505 aa39.35■■■■□ 3.89
ACTB-203ENST00000417101 TDRD9Q8NDG6 1382 aaKnown RBP39.34■■■■□ 3.89
ACTB-203ENST00000417101 FBLN2P98095 1184 aa39.3■■■■□ 3.88
ACTB-203ENST00000417101 CHD1O14646 1710 aa39.27■■■■□ 3.88
ACTB-203ENST00000417101 ARHGEF11O15085 1522 aa39.26■■■■□ 3.88
ACTB-203ENST00000417101 WDR97A6NE52 1622 aa39.16■■■■□ 3.86
ACTB-203ENST00000417101 SNAPC4Q5SXM2 1469 aa39.13■■■■□ 3.85
ACTB-203ENST00000417101 GRIN2BQ13224 1484 aa39.05■■■■□ 3.84
ACTB-203ENST00000417101 CYB5RLQ6IPT4 315 aa39.02■■■■□ 3.84
ACTB-203ENST00000417101 CHMP7Q8WUX9 453 aaPredicted RBP39.02■■■■□ 3.84
ACTB-203ENST00000417101 MAGI1Q96QZ7 1491 aaPredicted RBP39.01■■■■□ 3.84
ACTB-203ENST00000417101 GAPVD1Q14C86 1478 aa38.93■■■■□ 3.82
ACTB-203ENST00000417101 ABCA10Q8WWZ4 1543 aa38.9■■■■□ 3.82
ACTB-203ENST00000417101 ARAP1Q96P48 1450 aa38.9■■■■□ 3.82
ACTB-203ENST00000417101 SYNJ2O15056 1496 aa38.89■■■■□ 3.82
ACTB-203ENST00000417101 CLASP1Q7Z460 1538 aa38.85■■■■□ 3.81
ACTB-203ENST00000417101 SYNJ1O43426 1573 aa38.85■■■■□ 3.81
ACTB-203ENST00000417101 PBRM1Q86U86 1689 aa38.84■■■■□ 3.81
ACTB-203ENST00000417101 WRNQ14191 1432 aaPredicted RBP eCLIP38.81■■■■□ 3.85e-23■□□□□ 9.3
ACTB-203ENST00000417101 ABCA5Q8WWZ7 1642 aa38.81■■■■□ 3.8
ACTB-203ENST00000417101 TOP2BQ02880 1626 aa38.73■■■■□ 3.79
ACTB-203ENST00000417101 BIVM-ERCC5R4GMW8 1640 aa38.71■■■■□ 3.79
ACTB-203ENST00000417101 TRHP20396 242 aaPredicted RBP38.55■■■■□ 3.76
ACTB-203ENST00000417101 GRIN2AQ12879 1464 aa38.54■■■■□ 3.76
ACTB-203ENST00000417101 ADAMTS12P58397 1594 aa38.52■■■■□ 3.76
ACTB-203ENST00000417101 FHAD1B1AJZ9 1412 aa38.45■■■■□ 3.75
ACTB-203ENST00000417101 ERICH3Q5RHP9 1530 aa38.41■■■■□ 3.74
ACTB-203ENST00000417101 NUP160Q12769 1436 aa38.4■■■■□ 3.74
ACTB-203ENST00000417101 CEP170Q5SW79 1584 aa38.38■■■■□ 3.73
ACTB-203ENST00000417101 ERCC6L2Q5T890 1561 aa38.29■■■■□ 3.72
ACTB-203ENST00000417101 SHROOM2Q13796 1616 aa38.17■■■■□ 3.7
ACTB-203ENST00000417101 PRG4Q92954 1404 aaPredicted RBP38.05■■■■□ 3.68
ACTB-203ENST00000417101 JPH4Q96JJ6 628 aa38.05■■■■□ 3.68
ACTB-203ENST00000417101 KIF27Q86VH2 1401 aa38.03■■■■□ 3.68
ACTB-203ENST00000417101 IGF1RP08069 1367 aa38.01■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms