Protein–RNA interactions for Protein: Q9BQW3

EBF4, Transcription factor COE4, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF4Q9BQW3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
EBF4Q9BQW3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EBF4Q9BQW3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
EBF4Q9BQW3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 DUX4L4-201ENST00000566884 1269 ntBASIC21.18■□□□□ 0.98
EBF4Q9BQW3 AC074183.2-201ENST00000623112 922 ntBASIC21.18■□□□□ 0.98
EBF4Q9BQW3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 AC004687.1-201ENST00000579003 1625 ntBASIC21.18■□□□□ 0.98
EBF4Q9BQW3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
EBF4Q9BQW3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
EBF4Q9BQW3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 AC004987.1-201ENST00000428627 508 ntBASIC21.16■□□□□ 0.98
EBF4Q9BQW3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.16■□□□□ 0.98
EBF4Q9BQW3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 ATP5G2P3-201ENST00000429083 425 ntBASIC21.15■□□□□ 0.98
EBF4Q9BQW3 NTF6A-201ENST00000591175 560 ntBASIC21.15■□□□□ 0.98
EBF4Q9BQW3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.15■□□□□ 0.98
EBF4Q9BQW3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
EBF4Q9BQW3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
EBF4Q9BQW3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
EBF4Q9BQW3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.14■□□□□ 0.98
EBF4Q9BQW3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
EBF4Q9BQW3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.14■□□□□ 0.98
EBF4Q9BQW3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.14■□□□□ 0.97
EBF4Q9BQW3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.13■□□□□ 0.97
EBF4Q9BQW3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.13■□□□□ 0.97
EBF4Q9BQW3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
EBF4Q9BQW3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
EBF4Q9BQW3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.13■□□□□ 0.97
EBF4Q9BQW3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
EBF4Q9BQW3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms