RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 NISCHQ9Y2I1 1504 aa39.51■■■■□ 3.92
RARA-201ENST00000254066 CCDC180Q9P1Z9 1646 aa35.37■■■■□ 3.25
RARA-201ENST00000254066 ABCC9O60706 1549 aa34.83■■■■□ 3.17
RARA-201ENST00000254066 HRCP23327 699 aa34.54■■■■□ 3.12
RARA-201ENST00000254066 PELP1Q8IZL8 1130 aaKnown RBP34.03■■■■□ 3.04
RARA-201ENST00000254066 SHROOM4Q9ULL8 1493 aa33.57■■■□□ 2.96
RARA-201ENST00000254066 SUPT5HO00267 1087 aaKnown RBP33.55■■■□□ 2.96
RARA-201ENST00000254066 MYT1Q01538 1121 aa33.51■■■□□ 2.96
RARA-201ENST00000254066 MYO15BQ96JP2 1530 aa33.5■■■□□ 2.95
RARA-201ENST00000254066 PCGF6Q9BYE7 350 aa33.49■■■□□ 2.95
RARA-201ENST00000254066 RB1CC1Q8TDY2 1594 aa33.47■■■□□ 2.95
RARA-201ENST00000254066 CHIC1Q5VXU3 224 aa33.37■■■□□ 2.93
RARA-201ENST00000254066 NACADO15069 1562 aa33.36■■■□□ 2.93
RARA-201ENST00000254066 PPARGC1BQ86YN6 1023 aaKnown RBP33.33■■■□□ 2.93
RARA-201ENST00000254066 DCAF1Q9Y4B6 1507 aa33.29■■■□□ 2.92
RARA-201ENST00000254066 DCAF8L2P0C7V8 631 aa33.04■■■□□ 2.88
RARA-201ENST00000254066 ZCCHC6Q5VYS8 1495 aaKnown RBP32.99■■■□□ 2.87
RARA-201ENST00000254066 TRIM26Q12899 539 aaPredicted RBP32.77■■■□□ 2.84
RARA-201ENST00000254066 ZEB1P37275 1124 aaPredicted RBP32.76■■■□□ 2.84
RARA-201ENST00000254066 UNC13AQ9UPW8 1703 aa32.59■■■□□ 2.81
RARA-201ENST00000254066 SCAF1Q9H7N4 1312 aaKnown RBP32.5■■■□□ 2.79
RARA-201ENST00000254066 PABPN1Q86U42 306 aaKnown RBP eCLIP32.43■■■□□ 2.78
RARA-201ENST00000254066 BICRAQ9NZM4 1560 aa32.38■■■□□ 2.77
RARA-201ENST00000254066 LOC105371045A0A1W2PR82 267 aa32.29■■■□□ 2.76
RARA-201ENST00000254066 DNAJC5BQ9UF47 199 aa32.26■■■□□ 2.76
RARA-201ENST00000254066 TTBK1Q5TCY1 1321 aaPredicted RBP32.21■■■□□ 2.75
RARA-201ENST00000254066 SCRIBQ14160 1630 aa32.09■■■□□ 2.73
RARA-201ENST00000254066 ACIN1Q9UKV3 1341 aaKnown RBP31.87■■■□□ 2.69
RARA-201ENST00000254066 EIF4G1Q04637 1599 aaKnown RBP31.59■■■□□ 2.65
RARA-201ENST00000254066 NEUROD1Q13562 356 aa31.59■■■□□ 2.65
RARA-201ENST00000254066 CENPBP07199 599 aaPredicted RBP31.57■■■□□ 2.64
RARA-201ENST00000254066 CC2D2AQ9P2K1 1620 aa31.54■■■□□ 2.64
RARA-201ENST00000254066 GTF3C3Q9Y5Q9 886 aa31.44■■■□□ 2.62
RARA-201ENST00000254066 CECR2Q9BXF3 1484 aa31.4■■■□□ 2.62
RARA-201ENST00000254066 TRIM41Q8WV44 630 aa31.28■■■□□ 2.6
RARA-201ENST00000254066 DIEXFQ68CQ4 756 aaKnown RBP31.23■■■□□ 2.59
RARA-201ENST00000254066 CCER1Q8TC90 406 aaPredicted RBP31.09■■■□□ 2.57
RARA-201ENST00000254066 RSF1Q96T23 1441 aaPredicted RBP31.05■■■□□ 2.56
RARA-201ENST00000254066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.98■■■□□ 2.55
RARA-201ENST00000254066 FAM9AQ8IZU1 332 aaPredicted RBP30.89■■■□□ 2.54
RARA-201ENST00000254066 PRKCSHP14314 528 aaPredicted RBP30.86■■■□□ 2.53
RARA-201ENST00000254066 NCAPD3P42695 1498 aa30.76■■■□□ 2.51
RARA-201ENST00000254066 SMARCA4P51532 1647 aa30.73■■■□□ 2.51
RARA-201ENST00000254066 ZNF316A6NFI3 1004 aaPredicted RBP30.73■■■□□ 2.51
RARA-201ENST00000254066 BAZ1AQ9NRL2 1556 aaPredicted RBP30.69■■■□□ 2.5
RARA-201ENST00000254066 SMARCA2P51531 1590 aa30.68■■■□□ 2.5
RARA-201ENST00000254066 ATAD2BQ9ULI0 1458 aa30.67■■■□□ 2.5
RARA-201ENST00000254066 WRNQ14191 1432 aaPredicted RBP eCLIP30.66■■■□□ 2.5
RARA-201ENST00000254066 HMGXB3Q12766 1538 aa30.59■■■□□ 2.49
RARA-201ENST00000254066 ERICH6Q7L0X2 663 aa30.56■■■□□ 2.48
RARA-201ENST00000254066 CLSPNQ9HAW4 1339 aa30.53■■■□□ 2.48
RARA-201ENST00000254066 PEG3Q9GZU2 1588 aa30.5■■■□□ 2.47
RARA-201ENST00000254066 EHMT2Q96KQ7 1210 aa30.44■■■□□ 2.46
RARA-201ENST00000254066 BCL11AQ9H165 835 aa30.42■■■□□ 2.46
RARA-201ENST00000254066 BAZ1BQ9UIG0 1483 aaKnown RBP30.4■■■□□ 2.46
RARA-201ENST00000254066 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
RARA-201ENST00000254066 YTHDC1Q96MU7 727 aaKnown RBP30.36■■■□□ 2.45
RARA-201ENST00000254066 APLP2Q06481 763 aa30.33■■■□□ 2.45
RARA-201ENST00000254066 MIER1Q8N108 512 aa30.32■■■□□ 2.44
RARA-201ENST00000254066 CEP162Q5TB80 1403 aa30.19■■■□□ 2.42
RARA-201ENST00000254066 TNIKQ9UKE5 1360 aa30.14■■■□□ 2.42
RARA-201ENST00000254066 ERCC6Q03468 1493 aa30.13■■■□□ 2.41
RARA-201ENST00000254066 ANP32EQ9BTT0 268 aa30.11■■■□□ 2.41
RARA-201ENST00000254066 CUX2O14529 1486 aa30.03■■■□□ 2.4
RARA-201ENST00000254066 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
RARA-201ENST00000254066 SUPT16HQ9Y5B9 1047 aaKnown RBP30.02■■■□□ 2.4
RARA-201ENST00000254066 WIZO95785 1651 aa30.01■■■□□ 2.39
RARA-201ENST00000254066 NESP48681 1621 aa30■■■□□ 2.39
RARA-201ENST00000254066 EEA1Q15075 1411 aa29.99■■■□□ 2.39
RARA-201ENST00000254066 TSHZ2Q9NRE2 1034 aa29.9■■■□□ 2.38
RARA-201ENST00000254066 PDS5BQ9NTI5 1447 aa29.84■■■□□ 2.37
RARA-201ENST00000254066 CADPSQ9ULU8 1353 aa29.82■■■□□ 2.36
RARA-201ENST00000254066 CCDC88BA6NC98 1476 aa29.8■■■□□ 2.36
RARA-201ENST00000254066 TOP2AP11388 1531 aaKnown RBP29.76■■■□□ 2.36
RARA-201ENST00000254066 GOLGA3Q08378 1498 aa29.72■■■□□ 2.35
RARA-201ENST00000254066 THOC2Q8NI27 1593 aaKnown RBP29.71■■■□□ 2.35
RARA-201ENST00000254066 ABCC8Q09428 1581 aa29.69■■■□□ 2.34
RARA-201ENST00000254066 CSRNP3Q8WYN3 585 aa29.69■■■□□ 2.34
RARA-201ENST00000254066 KIF21AQ7Z4S6 1674 aa29.67■■■□□ 2.34
RARA-201ENST00000254066 SLC24A1O60721 1099 aa29.67■■■□□ 2.34
RARA-201ENST00000254066 SOGA1O94964 1423 aa29.66■■■□□ 2.34
RARA-201ENST00000254066 HNRNPUL2Q1KMD3 747 aaKnown RBP29.6■■■□□ 2.33
RARA-201ENST00000254066 UBTFP17480 764 aaKnown RBP29.58■■■□□ 2.33
RARA-201ENST00000254066 CFTRP13569 1480 aa29.56■■■□□ 2.32
RARA-201ENST00000254066 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
RARA-201ENST00000254066 DNAJC5Q9H3Z4 198 aa29.5■■■□□ 2.31
RARA-201ENST00000254066 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
RARA-201ENST00000254066 VPS8Q8N3P4 1428 aa29.46■■■□□ 2.31
RARA-201ENST00000254066 KIF21BO75037 1637 aa29.45■■■□□ 2.31
RARA-201ENST00000254066 FANCD2Q9BXW9 1451 aa29.45■■■□□ 2.31
RARA-201ENST00000254066 WDR62O43379 1518 aa29.44■■■□□ 2.3
RARA-201ENST00000254066 RUSC2Q8N2Y8 1516 aa29.41■■■□□ 2.3
RARA-201ENST00000254066 DHX57Q6P158 1386 aaKnown RBP29.39■■■□□ 2.3
RARA-201ENST00000254066 CLIP1P30622 1438 aa29.37■■■□□ 2.29
RARA-201ENST00000254066 PRDM2Q13029 1718 aa29.32■■■□□ 2.28
RARA-201ENST00000254066 RBM19Q9Y4C8 960 aaKnown RBP29.2■■■□□ 2.27
RARA-201ENST00000254066 URB2Q14146 1524 aaKnown RBP29.15■■■□□ 2.26
RARA-201ENST00000254066 FKBP8Q14318 412 aa29.12■■■□□ 2.25
RARA-201ENST00000254066 NEFLP07196 543 aa29.06■■■□□ 2.24
RARA-201ENST00000254066 BCANQ96GW7 911 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms