RNA–Protein interactions for RNA: ENST00000413164.6

SLC13A3-204, Transcript of solute carrier family 13 member 3, humanhuman

TSL 2 BASIC

Gene SLC13A3, Length 2,008 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC13A3-204ENST00000413164 NISCHQ9Y2I1 1504 aa45.45■■■■■ 4.87
SLC13A3-204ENST00000413164 CCDC180Q9P1Z9 1646 aa39.55■■■■□ 3.92
SLC13A3-204ENST00000413164 ZCCHC6Q5VYS8 1495 aaKnown RBP38.35■■■■□ 3.73
SLC13A3-204ENST00000413164 ABCC9O60706 1549 aa37.93■■■■□ 3.66
SLC13A3-204ENST00000413164 SHROOM4Q9ULL8 1493 aa37.73■■■■□ 3.63
SLC13A3-204ENST00000413164 DCAF8L2P0C7V8 631 aa37.58■■■■□ 3.61
SLC13A3-204ENST00000413164 DCAF1Q9Y4B6 1507 aa37.53■■■■□ 3.6
SLC13A3-204ENST00000413164 MYO15BQ96JP2 1530 aa37■■■■□ 3.51
SLC13A3-204ENST00000413164 NACADO15069 1562 aa36.98■■■■□ 3.51
SLC13A3-204ENST00000413164 RB1CC1Q8TDY2 1594 aa36.81■■■■□ 3.48
SLC13A3-204ENST00000413164 SUPT5HO00267 1087 aaKnown RBP36.69■■■■□ 3.46
SLC13A3-204ENST00000413164 SCRIBQ14160 1630 aa36.34■■■■□ 3.41
SLC13A3-204ENST00000413164 UNC13AQ9UPW8 1703 aa36.02■■■■□ 3.36
SLC13A3-204ENST00000413164 PABPN1Q86U42 306 aaKnown RBP eCLIP35.69■■■■□ 3.3
SLC13A3-204ENST00000413164 BICRAQ9NZM4 1560 aa35.65■■■■□ 3.3
SLC13A3-204ENST00000413164 RSF1Q96T23 1441 aaPredicted RBP35.62■■■■□ 3.29
SLC13A3-204ENST00000413164 CHIC1Q5VXU3 224 aa35.57■■■■□ 3.29
SLC13A3-204ENST00000413164 CECR2Q9BXF3 1484 aa35.32■■■■□ 3.25
SLC13A3-204ENST00000413164 MROH2BQ7Z745 1585 aa35.19■■■■□ 3.22
SLC13A3-204ENST00000413164 BAZ1AQ9NRL2 1556 aaPredicted RBP34.99■■■■□ 3.19
SLC13A3-204ENST00000413164 WIZO95785 1651 aa34.95■■■■□ 3.19
SLC13A3-204ENST00000413164 SMARCA4P51532 1647 aa34.78■■■■□ 3.16
SLC13A3-204ENST00000413164 EIF4G1Q04637 1599 aaKnown RBP34.66■■■■□ 3.14
SLC13A3-204ENST00000413164 TOP2AP11388 1531 aaKnown RBP34.54■■■■□ 3.12
SLC13A3-204ENST00000413164 TRIM41Q8WV44 630 aa34.39■■■■□ 3.1
SLC13A3-204ENST00000413164 PEG3Q9GZU2 1588 aa34.34■■■■□ 3.09
SLC13A3-204ENST00000413164 ATAD2BQ9ULI0 1458 aa34.34■■■■□ 3.09
SLC13A3-204ENST00000413164 SMARCA2P51531 1590 aa34.32■■■■□ 3.09
SLC13A3-204ENST00000413164 CC2D2AQ9P2K1 1620 aa34.29■■■■□ 3.08
SLC13A3-204ENST00000413164 LOC105371045A0A1W2PR82 267 aa34.29■■■■□ 3.08
SLC13A3-204ENST00000413164 CCDC88BA6NC98 1476 aa34.26■■■■□ 3.07
SLC13A3-204ENST00000413164 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
SLC13A3-204ENST00000413164 NCAPD3P42695 1498 aa34.12■■■■□ 3.05
SLC13A3-204ENST00000413164 HMGXB3Q12766 1538 aa34.03■■■■□ 3.04
SLC13A3-204ENST00000413164 DNAJC5BQ9UF47 199 aa33.91■■■■□ 3.02
SLC13A3-204ENST00000413164 FAM9AQ8IZU1 332 aaPredicted RBP33.84■■■■□ 3.01
SLC13A3-204ENST00000413164 ABCC8Q09428 1581 aa33.83■■■■□ 3.01
SLC13A3-204ENST00000413164 PCGF6Q9BYE7 350 aa33.56■■■□□ 2.96
SLC13A3-204ENST00000413164 WRNQ14191 1432 aaPredicted RBP eCLIP33.46■■■□□ 2.95
SLC13A3-204ENST00000413164 SOGA1O94964 1423 aa33.38■■■□□ 2.93
SLC13A3-204ENST00000413164 EHMT2Q96KQ7 1210 aa33.36■■■□□ 2.93
SLC13A3-204ENST00000413164 EEA1Q15075 1411 aa33.36■■■□□ 2.93
SLC13A3-204ENST00000413164 SYNJ1O43426 1573 aa33.33■■■□□ 2.93
SLC13A3-204ENST00000413164 TRIM26Q12899 539 aaPredicted RBP33.3■■■□□ 2.92
SLC13A3-204ENST00000413164 HRCP23327 699 aa33.27■■■□□ 2.92
SLC13A3-204ENST00000413164 CADPSQ9ULU8 1353 aa33.24■■■□□ 2.91
SLC13A3-204ENST00000413164 RUSC2Q8N2Y8 1516 aa33.23■■■□□ 2.91
SLC13A3-204ENST00000413164 CFTRP13569 1480 aa33.23■■■□□ 2.91
SLC13A3-204ENST00000413164 CSRNP3Q8WYN3 585 aa33.16■■■□□ 2.9
SLC13A3-204ENST00000413164 NESP48681 1621 aa33.12■■■□□ 2.89
SLC13A3-204ENST00000413164 TOP2BQ02880 1626 aa33.09■■■□□ 2.89
SLC13A3-204ENST00000413164 LAMC3Q9Y6N6 1575 aa33.07■■■□□ 2.88
SLC13A3-204ENST00000413164 TNIKQ9UKE5 1360 aa33.05■■■□□ 2.88
SLC13A3-204ENST00000413164 BIVM-ERCC5R4GMW8 1640 aa33.03■■■□□ 2.88
SLC13A3-204ENST00000413164 PRDM2Q13029 1718 aa33.03■■■□□ 2.88
SLC13A3-204ENST00000413164 GOLGA3Q08378 1498 aa32.97■■■□□ 2.87
SLC13A3-204ENST00000413164 CEP162Q5TB80 1403 aa32.96■■■□□ 2.87
SLC13A3-204ENST00000413164 KIF21BO75037 1637 aa32.93■■■□□ 2.86
SLC13A3-204ENST00000413164 CEP164Q9UPV0 1460 aa32.88■■■□□ 2.85
SLC13A3-204ENST00000413164 FANCD2Q9BXW9 1451 aa32.88■■■□□ 2.85
SLC13A3-204ENST00000413164 PDS5BQ9NTI5 1447 aa32.86■■■□□ 2.85
SLC13A3-204ENST00000413164 CUX1P39880 1505 aa32.84■■■□□ 2.85
SLC13A3-204ENST00000413164 UBTFP17480 764 aaKnown RBP32.78■■■□□ 2.84
SLC13A3-204ENST00000413164 KIF21AQ7Z4S6 1674 aa32.72■■■□□ 2.83
SLC13A3-204ENST00000413164 RAPGEF2Q9Y4G8 1499 aa32.64■■■□□ 2.82
SLC13A3-204ENST00000413164 ERCC6Q03468 1493 aa32.61■■■□□ 2.81
SLC13A3-204ENST00000413164 PPARGC1BQ86YN6 1023 aaKnown RBP32.6■■■□□ 2.81
SLC13A3-204ENST00000413164 PRXQ9BXM0 1461 aa32.56■■■□□ 2.8
SLC13A3-204ENST00000413164 ERICH3Q5RHP9 1530 aa32.54■■■□□ 2.8
SLC13A3-204ENST00000413164 KIF27Q86VH2 1401 aa32.51■■■□□ 2.79
SLC13A3-204ENST00000413164 CLIP1P30622 1438 aa32.49■■■□□ 2.79
SLC13A3-204ENST00000413164 URB2Q14146 1524 aaKnown RBP32.47■■■□□ 2.79
SLC13A3-204ENST00000413164 DNMBPQ6XZF7 1577 aa32.47■■■□□ 2.79
SLC13A3-204ENST00000413164 TOPBP1Q92547 1522 aa32.45■■■□□ 2.79
SLC13A3-204ENST00000413164 MRC2Q9UBG0 1479 aa32.44■■■□□ 2.78
SLC13A3-204ENST00000413164 FGD5Q6ZNL6 1462 aa32.34■■■□□ 2.77
SLC13A3-204ENST00000413164 ZEB1P37275 1124 aaPredicted RBP32.33■■■□□ 2.77
SLC13A3-204ENST00000413164 VPS8Q8N3P4 1428 aa32.33■■■□□ 2.77
SLC13A3-204ENST00000413164 THOC2Q8NI27 1593 aaKnown RBP32.28■■■□□ 2.76
SLC13A3-204ENST00000413164 WDR62O43379 1518 aa32.26■■■□□ 2.76
SLC13A3-204ENST00000413164 CUX2O14529 1486 aa32.26■■■□□ 2.76
SLC13A3-204ENST00000413164 POLA1P09884 1462 aaPredicted RBP32.25■■■□□ 2.75
SLC13A3-204ENST00000413164 IGF1RP08069 1367 aa32.2■■■□□ 2.75
SLC13A3-204ENST00000413164 RAD54L2Q9Y4B4 1467 aa32.16■■■□□ 2.74
SLC13A3-204ENST00000413164 TTBK1Q5TCY1 1321 aaPredicted RBP32.15■■■□□ 2.74
SLC13A3-204ENST00000413164 ARAP1Q96P48 1450 aa32.11■■■□□ 2.73
SLC13A3-204ENST00000413164 RANGAP1P46060 587 aaPredicted RBP32.05■■■□□ 2.72
SLC13A3-204ENST00000413164 ABCA10Q8WWZ4 1543 aa32.05■■■□□ 2.72
SLC13A3-204ENST00000413164 CARMIL1Q5VZK9 1371 aa32.01■■■□□ 2.72
SLC13A3-204ENST00000413164 TARBP1Q13395 1621 aaKnown RBP31.98■■■□□ 2.71
SLC13A3-204ENST00000413164 IFT140Q96RY7 1462 aa31.96■■■□□ 2.71
SLC13A3-204ENST00000413164 ARHGAP35Q9NRY4 1499 aa31.95■■■□□ 2.71
SLC13A3-204ENST00000413164 APLP2Q06481 763 aa31.94■■■□□ 2.7
SLC13A3-204ENST00000413164 WDR97A6NE52 1622 aa31.94■■■□□ 2.7
SLC13A3-204ENST00000413164 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.92■■■□□ 2.7
SLC13A3-204ENST00000413164 TDRD9Q8NDG6 1382 aaKnown RBP31.92■■■□□ 2.7
SLC13A3-204ENST00000413164 CCER1Q8TC90 406 aaPredicted RBP31.83■■■□□ 2.69
SLC13A3-204ENST00000413164 GAPVD1Q14C86 1478 aa31.81■■■□□ 2.68
SLC13A3-204ENST00000413164 ZNF608Q9ULD9 1512 aaPredicted RBP31.81■■■□□ 2.68
SLC13A3-204ENST00000413164 CUL7Q14999 1698 aa31.8■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms