RNA–Protein interactions for RNA: ENST00000357811.7

COL13A1-202, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 2,991 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-202ENST00000357811 NISCHQ9Y2I1 1504 aa41.74■■■■■ 4.27
COL13A1-202ENST00000357811 SHROOM4Q9ULL8 1493 aa36.43■■■■□ 3.42
COL13A1-202ENST00000357811 SUPT5HO00267 1087 aaKnown RBP35.78■■■■□ 3.32
COL13A1-202ENST00000357811 DCAF8L2P0C7V8 631 aa35.51■■■■□ 3.28
COL13A1-202ENST00000357811 ZCCHC6Q5VYS8 1495 aaKnown RBP35.26■■■■□ 3.23
COL13A1-202ENST00000357811 CCDC180Q9P1Z9 1646 aa35.07■■■■□ 3.21
COL13A1-202ENST00000357811 CHIC1Q5VXU3 224 aa34.5■■■■□ 3.11
COL13A1-202ENST00000357811 MYO15BQ96JP2 1530 aa34.38■■■■□ 3.09
COL13A1-202ENST00000357811 DCAF1Q9Y4B6 1507 aa33.88■■■■□ 3.01
COL13A1-202ENST00000357811 PCGF6Q9BYE7 350 aa33.81■■■■□ 3
COL13A1-202ENST00000357811 LOC105371045A0A1W2PR82 267 aa33.79■■■■□ 3
COL13A1-202ENST00000357811 HRCP23327 699 aa33.56■■■□□ 2.96
COL13A1-202ENST00000357811 SCRIBQ14160 1630 aa33.48■■■□□ 2.95
COL13A1-202ENST00000357811 PPARGC1BQ86YN6 1023 aaKnown RBP33.27■■■□□ 2.92
COL13A1-202ENST00000357811 ABCC9O60706 1549 aa33.25■■■□□ 2.91
COL13A1-202ENST00000357811 RSF1Q96T23 1441 aaPredicted RBP33.22■■■□□ 2.91
COL13A1-202ENST00000357811 EHMT2Q96KQ7 1210 aa33.2■■■□□ 2.9
COL13A1-202ENST00000357811 FAM9AQ8IZU1 332 aaPredicted RBP33.18■■■□□ 2.9
COL13A1-202ENST00000357811 TRIM41Q8WV44 630 aa33.09■■■□□ 2.89
COL13A1-202ENST00000357811 RB1CC1Q8TDY2 1594 aa32.92■■■□□ 2.86
COL13A1-202ENST00000357811 CECR2Q9BXF3 1484 aa32.85■■■□□ 2.85
COL13A1-202ENST00000357811 TRIM26Q12899 539 aaPredicted RBP32.8■■■□□ 2.84
COL13A1-202ENST00000357811 MROH2BQ7Z745 1585 aa32.63■■■□□ 2.81
COL13A1-202ENST00000357811 NACADO15069 1562 aa32.57■■■□□ 2.8
COL13A1-202ENST00000357811 WIZO95785 1651 aa32.45■■■□□ 2.79
COL13A1-202ENST00000357811 TTBK1Q5TCY1 1321 aaPredicted RBP32.08■■■□□ 2.73
COL13A1-202ENST00000357811 PABPN1Q86U42 306 aaKnown RBP eCLIP32■■■□□ 2.71
COL13A1-202ENST00000357811 BAZ1AQ9NRL2 1556 aaPredicted RBP31.99■■■□□ 2.71
COL13A1-202ENST00000357811 ZEB1P37275 1124 aaPredicted RBP31.93■■■□□ 2.7
COL13A1-202ENST00000357811 ABCC8Q09428 1581 aa31.91■■■□□ 2.7
COL13A1-202ENST00000357811 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.83■■■□□ 2.69
COL13A1-202ENST00000357811 CCDC88BA6NC98 1476 aa31.82■■■□□ 2.68
COL13A1-202ENST00000357811 SMARCA4P51532 1647 aa31.74■■■□□ 2.67
COL13A1-202ENST00000357811 EIF4G1Q04637 1599 aaKnown RBP31.73■■■□□ 2.67
COL13A1-202ENST00000357811 TOP2AP11388 1531 aaKnown RBP31.72■■■□□ 2.67
COL13A1-202ENST00000357811 SOGA1O94964 1423 aa31.67■■■□□ 2.66
COL13A1-202ENST00000357811 CCER1Q8TC90 406 aaPredicted RBP31.65■■■□□ 2.66
COL13A1-202ENST00000357811 UNC13AQ9UPW8 1703 aa31.64■■■□□ 2.65
COL13A1-202ENST00000357811 SMARCA2P51531 1590 aa31.63■■■□□ 2.65
COL13A1-202ENST00000357811 UBTFP17480 764 aaKnown RBP31.62■■■□□ 2.65
COL13A1-202ENST00000357811 RUSC2Q8N2Y8 1516 aa31.54■■■□□ 2.64
COL13A1-202ENST00000357811 CSRNP3Q8WYN3 585 aa31.47■■■□□ 2.63
COL13A1-202ENST00000357811 CEP162Q5TB80 1403 aa31.47■■■□□ 2.63
COL13A1-202ENST00000357811 RANGAP1P46060 587 aaPredicted RBP31.36■■■□□ 2.61
COL13A1-202ENST00000357811 BICRAQ9NZM4 1560 aa31.3■■■□□ 2.6
COL13A1-202ENST00000357811 TNIKQ9UKE5 1360 aa31.26■■■□□ 2.6
COL13A1-202ENST00000357811 WRNQ14191 1432 aaPredicted RBP eCLIP31.23■■■□□ 2.59
COL13A1-202ENST00000357811 PELP1Q8IZL8 1130 aaKnown RBP31.16■■■□□ 2.58
COL13A1-202ENST00000357811 SCAF1Q9H7N4 1312 aaKnown RBP31.14■■■□□ 2.57
COL13A1-202ENST00000357811 HNRNPUL2Q1KMD3 747 aaKnown RBP31.08■■■□□ 2.57
COL13A1-202ENST00000357811 EEA1Q15075 1411 aa31.07■■■□□ 2.56
COL13A1-202ENST00000357811 GOLGA3Q08378 1498 aa31.07■■■□□ 2.56
COL13A1-202ENST00000357811 SYNJ1O43426 1573 aa31.03■■■□□ 2.56
COL13A1-202ENST00000357811 ATAD2BQ9ULI0 1458 aa31.01■■■□□ 2.55
COL13A1-202ENST00000357811 BAZ1BQ9UIG0 1483 aaKnown RBP30.99■■■□□ 2.55
COL13A1-202ENST00000357811 DIEXFQ68CQ4 756 aaKnown RBP30.98■■■□□ 2.55
COL13A1-202ENST00000357811 PEG3Q9GZU2 1588 aa30.88■■■□□ 2.53
COL13A1-202ENST00000357811 CLIP1P30622 1438 aa30.87■■■□□ 2.53
COL13A1-202ENST00000357811 CEP164Q9UPV0 1460 aa30.85■■■□□ 2.53
COL13A1-202ENST00000357811 APLP2Q06481 763 aa30.82■■■□□ 2.52
COL13A1-202ENST00000357811 RAPGEF2Q9Y4G8 1499 aa30.82■■■□□ 2.52
COL13A1-202ENST00000357811 NEUROD1Q13562 356 aa30.81■■■□□ 2.52
COL13A1-202ENST00000357811 ACIN1Q9UKV3 1341 aaKnown RBP30.69■■■□□ 2.5
COL13A1-202ENST00000357811 KIF21BO75037 1637 aa30.64■■■□□ 2.5
COL13A1-202ENST00000357811 VPS8Q8N3P4 1428 aa30.63■■■□□ 2.49
COL13A1-202ENST00000357811 ZNF316A6NFI3 1004 aaPredicted RBP30.62■■■□□ 2.49
COL13A1-202ENST00000357811 YTHDC1Q96MU7 727 aaKnown RBP30.6■■■□□ 2.49
COL13A1-202ENST00000357811 GTF3C3Q9Y5Q9 886 aa30.52■■■□□ 2.48
COL13A1-202ENST00000357811 CENPBP07199 599 aaPredicted RBP30.47■■■□□ 2.47
COL13A1-202ENST00000357811 TOP2BQ02880 1626 aa30.46■■■□□ 2.47
COL13A1-202ENST00000357811 KANK4Q5T7N3 995 aaPredicted RBP30.44■■■□□ 2.46
COL13A1-202ENST00000357811 MIER1Q8N108 512 aa30.37■■■□□ 2.45
COL13A1-202ENST00000357811 ITGAEP38570 1179 aa30.35■■■□□ 2.45
COL13A1-202ENST00000357811 CUX1P39880 1505 aa30.31■■■□□ 2.44
COL13A1-202ENST00000357811 PRXQ9BXM0 1461 aa30.28■■■□□ 2.44
COL13A1-202ENST00000357811 NCAPD3P42695 1498 aa30.26■■■□□ 2.43
COL13A1-202ENST00000357811 ARAP1Q96P48 1450 aa30.26■■■□□ 2.43
COL13A1-202ENST00000357811 BIVM-ERCC5R4GMW8 1640 aa30.24■■■□□ 2.43
COL13A1-202ENST00000357811 KIF27Q86VH2 1401 aa30.22■■■□□ 2.43
COL13A1-202ENST00000357811 HMGXB3Q12766 1538 aa30.12■■■□□ 2.41
COL13A1-202ENST00000357811 ERICH3Q5RHP9 1530 aa30.12■■■□□ 2.41
COL13A1-202ENST00000357811 CFTRP13569 1480 aa30.1■■■□□ 2.41
COL13A1-202ENST00000357811 DHX57Q6P158 1386 aaKnown RBP30.07■■■□□ 2.4
COL13A1-202ENST00000357811 P3H3Q8IVL6 736 aa30.06■■■□□ 2.4
COL13A1-202ENST00000357811 ATP1B4Q9UN42 357 aaPredicted RBP30.06■■■□□ 2.4
COL13A1-202ENST00000357811 CUX2O14529 1486 aa30.04■■■□□ 2.4
COL13A1-202ENST00000357811 ARHGAP35Q9NRY4 1499 aa30.01■■■□□ 2.39
COL13A1-202ENST00000357811 IGF1RP08069 1367 aa29.95■■■□□ 2.39
COL13A1-202ENST00000357811 MYT1Q01538 1121 aa29.91■■■□□ 2.38
COL13A1-202ENST00000357811 CCNB3Q8WWL7 1395 aa29.91■■■□□ 2.38
COL13A1-202ENST00000357811 CADPSQ9ULU8 1353 aa29.86■■■□□ 2.37
COL13A1-202ENST00000357811 CARMIL1Q5VZK9 1371 aa29.86■■■□□ 2.37
COL13A1-202ENST00000357811 RRBP1Q9P2E9 1410 aaKnown RBP29.84■■■□□ 2.37
COL13A1-202ENST00000357811 FAM50AQ14320 339 aaKnown RBP29.84■■■□□ 2.37
COL13A1-202ENST00000357811 FGD5Q6ZNL6 1462 aa29.82■■■□□ 2.36
COL13A1-202ENST00000357811 CLSPNQ9HAW4 1339 aa29.77■■■□□ 2.36
COL13A1-202ENST00000357811 RAB3GAP2Q9H2M9 1393 aa29.73■■■□□ 2.35
COL13A1-202ENST00000357811 RAD54L2Q9Y4B4 1467 aa29.67■■■□□ 2.34
COL13A1-202ENST00000357811 SIN3AQ96ST3 1273 aa29.66■■■□□ 2.34
COL13A1-202ENST00000357811 PHLDB1Q86UU1 1377 aa29.65■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms