RNA–Protein interactions for RNA: ENST00000377453.8

CLN5-201, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLN5, Length 2,629 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-201ENST00000377453 NISCHQ9Y2I1 1504 aa41.57■■■■■ 4.25
CLN5-201ENST00000377453 SHROOM4Q9ULL8 1493 aa36.18■■■■□ 3.38
CLN5-201ENST00000377453 SUPT5HO00267 1087 aaKnown RBP35.51■■■■□ 3.28
CLN5-201ENST00000377453 ZCCHC6Q5VYS8 1495 aaKnown RBP35.18■■■■□ 3.22
CLN5-201ENST00000377453 DCAF8L2P0C7V8 631 aa34.99■■■■□ 3.19
CLN5-201ENST00000377453 CCDC180Q9P1Z9 1646 aa34.98■■■■□ 3.19
CLN5-201ENST00000377453 MYO15BQ96JP2 1530 aa34.45■■■■□ 3.11
CLN5-201ENST00000377453 CHIC1Q5VXU3 224 aa34.41■■■■□ 3.1
CLN5-201ENST00000377453 DCAF1Q9Y4B6 1507 aa33.81■■■■□ 3
CLN5-201ENST00000377453 PCGF6Q9BYE7 350 aa33.73■■■□□ 2.99
CLN5-201ENST00000377453 HRCP23327 699 aa33.66■■■□□ 2.98
CLN5-201ENST00000377453 LOC105371045A0A1W2PR82 267 aa33.65■■■□□ 2.98
CLN5-201ENST00000377453 ABCC9O60706 1549 aa33.43■■■□□ 2.94
CLN5-201ENST00000377453 PPARGC1BQ86YN6 1023 aaKnown RBP33.32■■■□□ 2.92
CLN5-201ENST00000377453 SCRIBQ14160 1630 aa33.28■■■□□ 2.92
CLN5-201ENST00000377453 RSF1Q96T23 1441 aaPredicted RBP33.1■■■□□ 2.89
CLN5-201ENST00000377453 FAM9AQ8IZU1 332 aaPredicted RBP32.91■■■□□ 2.86
CLN5-201ENST00000377453 EHMT2Q96KQ7 1210 aa32.87■■■□□ 2.85
CLN5-201ENST00000377453 RB1CC1Q8TDY2 1594 aa32.85■■■□□ 2.85
CLN5-201ENST00000377453 TRIM41Q8WV44 630 aa32.85■■■□□ 2.85
CLN5-201ENST00000377453 TRIM26Q12899 539 aaPredicted RBP32.76■■■□□ 2.83
CLN5-201ENST00000377453 CECR2Q9BXF3 1484 aa32.68■■■□□ 2.82
CLN5-201ENST00000377453 NACADO15069 1562 aa32.59■■■□□ 2.81
CLN5-201ENST00000377453 MROH2BQ7Z745 1585 aa32.49■■■□□ 2.79
CLN5-201ENST00000377453 WIZO95785 1651 aa32.33■■■□□ 2.77
CLN5-201ENST00000377453 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.7
CLN5-201ENST00000377453 BAZ1AQ9NRL2 1556 aaPredicted RBP31.93■■■□□ 2.7
CLN5-201ENST00000377453 ZEB1P37275 1124 aaPredicted RBP31.92■■■□□ 2.7
CLN5-201ENST00000377453 UNC13AQ9UPW8 1703 aa31.83■■■□□ 2.69
CLN5-201ENST00000377453 TTBK1Q5TCY1 1321 aaPredicted RBP31.81■■■□□ 2.68
CLN5-201ENST00000377453 EIF4G1Q04637 1599 aaKnown RBP31.8■■■□□ 2.68
CLN5-201ENST00000377453 ABCC8Q09428 1581 aa31.8■■■□□ 2.68
CLN5-201ENST00000377453 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.72■■■□□ 2.67
CLN5-201ENST00000377453 CCDC88BA6NC98 1476 aa31.7■■■□□ 2.67
CLN5-201ENST00000377453 TOP2AP11388 1531 aaKnown RBP31.63■■■□□ 2.65
CLN5-201ENST00000377453 SMARCA4P51532 1647 aa31.61■■■□□ 2.65
CLN5-201ENST00000377453 SOGA1O94964 1423 aa31.55■■■□□ 2.64
CLN5-201ENST00000377453 SMARCA2P51531 1590 aa31.55■■■□□ 2.64
CLN5-201ENST00000377453 CCER1Q8TC90 406 aaPredicted RBP31.5■■■□□ 2.63
CLN5-201ENST00000377453 BICRAQ9NZM4 1560 aa31.49■■■□□ 2.63
CLN5-201ENST00000377453 RUSC2Q8N2Y8 1516 aa31.44■■■□□ 2.62
CLN5-201ENST00000377453 CEP162Q5TB80 1403 aa31.39■■■□□ 2.61
CLN5-201ENST00000377453 UBTFP17480 764 aaKnown RBP31.33■■■□□ 2.61
CLN5-201ENST00000377453 SCAF1Q9H7N4 1312 aaKnown RBP31.3■■■□□ 2.6
CLN5-201ENST00000377453 CSRNP3Q8WYN3 585 aa31.28■■■□□ 2.6
CLN5-201ENST00000377453 TNIKQ9UKE5 1360 aa31.19■■■□□ 2.58
CLN5-201ENST00000377453 WRNQ14191 1432 aaPredicted RBP eCLIP31.19■■■□□ 2.58
CLN5-201ENST00000377453 RANGAP1P46060 587 aaPredicted RBP31■■■□□ 2.55
CLN5-201ENST00000377453 EEA1Q15075 1411 aa30.99■■■□□ 2.55
CLN5-201ENST00000377453 GOLGA3Q08378 1498 aa30.98■■■□□ 2.55
CLN5-201ENST00000377453 DIEXFQ68CQ4 756 aaKnown RBP30.95■■■□□ 2.55
CLN5-201ENST00000377453 SYNJ1O43426 1573 aa30.94■■■□□ 2.54
CLN5-201ENST00000377453 NEUROD1Q13562 356 aa30.89■■■□□ 2.53
CLN5-201ENST00000377453 HNRNPUL2Q1KMD3 747 aaKnown RBP30.89■■■□□ 2.53
CLN5-201ENST00000377453 ATAD2BQ9ULI0 1458 aa30.81■■■□□ 2.52
CLN5-201ENST00000377453 PEG3Q9GZU2 1588 aa30.8■■■□□ 2.52
CLN5-201ENST00000377453 ACIN1Q9UKV3 1341 aaKnown RBP30.79■■■□□ 2.52
CLN5-201ENST00000377453 BAZ1BQ9UIG0 1483 aaKnown RBP30.75■■■□□ 2.51
CLN5-201ENST00000377453 CEP164Q9UPV0 1460 aa30.75■■■□□ 2.51
CLN5-201ENST00000377453 CLIP1P30622 1438 aa30.75■■■□□ 2.51
CLN5-201ENST00000377453 RAPGEF2Q9Y4G8 1499 aa30.7■■■□□ 2.51
CLN5-201ENST00000377453 KIF21BO75037 1637 aa30.63■■■□□ 2.49
CLN5-201ENST00000377453 ZNF316A6NFI3 1004 aaPredicted RBP30.6■■■□□ 2.49
CLN5-201ENST00000377453 GTF3C3Q9Y5Q9 886 aa30.57■■■□□ 2.48
CLN5-201ENST00000377453 VPS8Q8N3P4 1428 aa30.56■■■□□ 2.48
CLN5-201ENST00000377453 APLP2Q06481 763 aa30.53■■■□□ 2.48
CLN5-201ENST00000377453 YTHDC1Q96MU7 727 aaKnown RBP30.51■■■□□ 2.47
CLN5-201ENST00000377453 CENPBP07199 599 aaPredicted RBP30.45■■■□□ 2.47
CLN5-201ENST00000377453 TOP2BQ02880 1626 aa30.37■■■□□ 2.45
CLN5-201ENST00000377453 MIER1Q8N108 512 aa30.36■■■□□ 2.45
CLN5-201ENST00000377453 PELP1Q8IZL8 1130 aaKnown RBP30.34■■■□□ 2.45
CLN5-201ENST00000377453 KANK4Q5T7N3 995 aaPredicted RBP30.3■■■□□ 2.44
CLN5-201ENST00000377453 ARAP1Q96P48 1450 aa30.23■■■□□ 2.43
CLN5-201ENST00000377453 NCAPD3P42695 1498 aa30.22■■■□□ 2.43
CLN5-201ENST00000377453 PRXQ9BXM0 1461 aa30.2■■■□□ 2.43
CLN5-201ENST00000377453 BIVM-ERCC5R4GMW8 1640 aa30.2■■■□□ 2.42
CLN5-201ENST00000377453 CUX1P39880 1505 aa30.19■■■□□ 2.42
CLN5-201ENST00000377453 HMGXB3Q12766 1538 aa30.08■■■□□ 2.41
CLN5-201ENST00000377453 ITGAEP38570 1179 aa30.07■■■□□ 2.4
CLN5-201ENST00000377453 ERICH3Q5RHP9 1530 aa30.07■■■□□ 2.4
CLN5-201ENST00000377453 DHX57Q6P158 1386 aaKnown RBP30.05■■■□□ 2.4
CLN5-201ENST00000377453 KIF27Q86VH2 1401 aa30.03■■■□□ 2.4
CLN5-201ENST00000377453 CC2D2AQ9P2K1 1620 aa29.97■■■□□ 2.39
CLN5-201ENST00000377453 CFTRP13569 1480 aa29.93■■■□□ 2.38
CLN5-201ENST00000377453 ARHGAP35Q9NRY4 1499 aa29.93■■■□□ 2.38
CLN5-201ENST00000377453 CUX2O14529 1486 aa29.83■■■□□ 2.37
CLN5-201ENST00000377453 RRBP1Q9P2E9 1410 aaKnown RBP29.83■■■□□ 2.37
CLN5-201ENST00000377453 CCNB3Q8WWL7 1395 aa29.8■■■□□ 2.36
CLN5-201ENST00000377453 DNAJC5BQ9UF47 199 aa29.78■■■□□ 2.36
CLN5-201ENST00000377453 IGF1RP08069 1367 aa29.78■■■□□ 2.36
CLN5-201ENST00000377453 P3H3Q8IVL6 736 aa29.76■■■□□ 2.35
CLN5-201ENST00000377453 CLSPNQ9HAW4 1339 aa29.74■■■□□ 2.35
CLN5-201ENST00000377453 ATP1B4Q9UN42 357 aaPredicted RBP29.68■■■□□ 2.34
CLN5-201ENST00000377453 CADPSQ9ULU8 1353 aa29.66■■■□□ 2.34
CLN5-201ENST00000377453 CARMIL1Q5VZK9 1371 aa29.66■■■□□ 2.34
CLN5-201ENST00000377453 FGD5Q6ZNL6 1462 aa29.64■■■□□ 2.34
CLN5-201ENST00000377453 RAB3GAP2Q9H2M9 1393 aa29.64■■■□□ 2.33
CLN5-201ENST00000377453 FAM50AQ14320 339 aaKnown RBP29.59■■■□□ 2.33
CLN5-201ENST00000377453 NESP48681 1621 aa29.56■■■□□ 2.32
CLN5-201ENST00000377453 PHLDB1Q86UU1 1377 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms