Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 LINC02228-203ENST00000641970 1355 ntBASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 ANOS2P-203ENST00000472227 1816 ntBASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV40A0A0B4J280 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 KRT18P14-201ENST00000534205 1250 ntBASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
TRAV40A0A0B4J280 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 AC010141.3-201ENST00000456659 717 ntBASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRAV40A0A0B4J280 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV40A0A0B4J280 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV40A0A0B4J280 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV40A0A0B4J280 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.83■□□□□ 0.44
TRAV40A0A0B4J280 TERF1P2-201ENST00000583350 1212 ntBASIC17.83■□□□□ 0.44
TRAV40A0A0B4J280 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV40A0A0B4J280 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV40A0A0B4J280 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV40A0A0B4J280 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 AC092068.2-201ENST00000590491 1708 ntBASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV40A0A0B4J280 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms