RNA–Protein interactions for RNA: ENST00000521578.5

PTP4A3-204, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTP4A3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-204ENST00000521578 NISCHQ9Y2I1 1504 aa51.72■■■■■ 5.87
PTP4A3-204ENST00000521578 CCDC180Q9P1Z9 1646 aa45.63■■■■■ 4.9
PTP4A3-204ENST00000521578 ABCC9O60706 1549 aa44.19■■■■■ 4.66
PTP4A3-204ENST00000521578 ZCCHC6Q5VYS8 1495 aaKnown RBP43.21■■■■■ 4.51
PTP4A3-204ENST00000521578 DCAF8L2P0C7V8 631 aa43.13■■■■■ 4.49
PTP4A3-204ENST00000521578 NACADO15069 1562 aa42.78■■■■■ 4.44
PTP4A3-204ENST00000521578 DCAF1Q9Y4B6 1507 aa42.74■■■■■ 4.43
PTP4A3-204ENST00000521578 RB1CC1Q8TDY2 1594 aa42.69■■■■■ 4.42
PTP4A3-204ENST00000521578 MYO15BQ96JP2 1530 aa42.66■■■■■ 4.42
PTP4A3-204ENST00000521578 SCRIBQ14160 1630 aa41.82■■■■■ 4.29
PTP4A3-204ENST00000521578 UNC13AQ9UPW8 1703 aa41.77■■■■■ 4.28
PTP4A3-204ENST00000521578 PABPN1Q86U42 306 aaKnown RBP eCLIP41.44■■■■■ 4.22
PTP4A3-204ENST00000521578 SHROOM4Q9ULL8 1493 aa41.41■■■■■ 4.22
PTP4A3-204ENST00000521578 BICRAQ9NZM4 1560 aa41.4■■■■■ 4.22
PTP4A3-204ENST00000521578 CECR2Q9BXF3 1484 aa40.28■■■■■ 4.04
PTP4A3-204ENST00000521578 EIF4G1Q04637 1599 aaKnown RBP40.26■■■■■ 4.03
PTP4A3-204ENST00000521578 BAZ1AQ9NRL2 1556 aaPredicted RBP40.03■■■■■ 4
PTP4A3-204ENST00000521578 DNAJC5BQ9UF47 199 aa40■■■■□ 3.99
PTP4A3-204ENST00000521578 SMARCA4P51532 1647 aa40■■■■□ 3.99
PTP4A3-204ENST00000521578 CC2D2AQ9P2K1 1620 aa39.95■■■■□ 3.99
PTP4A3-204ENST00000521578 MROH2BQ7Z745 1585 aa39.92■■■■□ 3.98
PTP4A3-204ENST00000521578 RSF1Q96T23 1441 aaPredicted RBP39.68■■■■□ 3.94
PTP4A3-204ENST00000521578 ATAD2BQ9ULI0 1458 aa39.63■■■■□ 3.93
PTP4A3-204ENST00000521578 SMARCA2P51531 1590 aa39.58■■■■□ 3.93
PTP4A3-204ENST00000521578 PEG3Q9GZU2 1588 aa39.54■■■■□ 3.92
PTP4A3-204ENST00000521578 WIZO95785 1651 aa39.54■■■■□ 3.92
PTP4A3-204ENST00000521578 NCAPD3P42695 1498 aa39.47■■■■□ 3.91
PTP4A3-204ENST00000521578 BAZ1BQ9UIG0 1483 aaKnown RBP39.35■■■■□ 3.89
PTP4A3-204ENST00000521578 HMGXB3Q12766 1538 aa39.32■■■■□ 3.89
PTP4A3-204ENST00000521578 SUPT5HO00267 1087 aaKnown RBP39.29■■■■□ 3.88
PTP4A3-204ENST00000521578 TOP2AP11388 1531 aaKnown RBP39.09■■■■□ 3.85
PTP4A3-204ENST00000521578 CCDC88BA6NC98 1476 aa38.67■■■■□ 3.78
PTP4A3-204ENST00000521578 NESP48681 1621 aa38.43■■■■□ 3.74
PTP4A3-204ENST00000521578 CADPSQ9ULU8 1353 aa38.39■■■■□ 3.74
PTP4A3-204ENST00000521578 LAMC3Q9Y6N6 1575 aa38.32■■■■□ 3.73
PTP4A3-204ENST00000521578 CFTRP13569 1480 aa38.28■■■■□ 3.72
PTP4A3-204ENST00000521578 PDS5BQ9NTI5 1447 aa38.07■■■■□ 3.69
PTP4A3-204ENST00000521578 PRDM2Q13029 1718 aa38.03■■■■□ 3.68
PTP4A3-204ENST00000521578 ERCC6Q03468 1493 aa38.02■■■■□ 3.68
PTP4A3-204ENST00000521578 FANCD2Q9BXW9 1451 aa37.97■■■■□ 3.67
PTP4A3-204ENST00000521578 KIF21AQ7Z4S6 1674 aa37.96■■■■□ 3.67
PTP4A3-204ENST00000521578 CEP164Q9UPV0 1460 aa37.85■■■■□ 3.65
PTP4A3-204ENST00000521578 MRC2Q9UBG0 1479 aa37.64■■■■□ 3.62
PTP4A3-204ENST00000521578 THOC2Q8NI27 1593 aaKnown RBP37.63■■■■□ 3.61
PTP4A3-204ENST00000521578 URB2Q14146 1524 aaKnown RBP37.55■■■■□ 3.6
PTP4A3-204ENST00000521578 ABCC8Q09428 1581 aa37.5■■■■□ 3.59
PTP4A3-204ENST00000521578 WDR62O43379 1518 aa37.48■■■■□ 3.59
PTP4A3-204ENST00000521578 TOPBP1Q92547 1522 aa37.43■■■■□ 3.58
PTP4A3-204ENST00000521578 DNMBPQ6XZF7 1577 aa37.41■■■■□ 3.58
PTP4A3-204ENST00000521578 CUX1P39880 1505 aa37.4■■■■□ 3.58
PTP4A3-204ENST00000521578 WRNQ14191 1432 aaPredicted RBP eCLIP37.39■■■■□ 3.588e-7■■■■■ 36.5
PTP4A3-204ENST00000521578 CUX2O14529 1486 aa37.29■■■■□ 3.56
PTP4A3-204ENST00000521578 SYNJ1O43426 1573 aa37.28■■■■□ 3.56
PTP4A3-204ENST00000521578 TOP2BQ02880 1626 aa37.22■■■■□ 3.55
PTP4A3-204ENST00000521578 BIVM-ERCC5R4GMW8 1640 aa37.19■■■■□ 3.54
PTP4A3-204ENST00000521578 FGD5Q6ZNL6 1462 aa37.17■■■■□ 3.54
PTP4A3-204ENST00000521578 POLA1P09884 1462 aaPredicted RBP37.17■■■■□ 3.54
PTP4A3-204ENST00000521578 RAD54L2Q9Y4B4 1467 aa37.04■■■■□ 3.52
PTP4A3-204ENST00000521578 SOGA1O94964 1423 aa37.03■■■■□ 3.52
PTP4A3-204ENST00000521578 TRIM41Q8WV44 630 aa37.02■■■■□ 3.52
PTP4A3-204ENST00000521578 IFT140Q96RY7 1462 aa37.01■■■■□ 3.51
PTP4A3-204ENST00000521578 CHIC1Q5VXU3 224 aa36.99■■■■□ 3.51
PTP4A3-204ENST00000521578 TARBP1Q13395 1621 aaKnown RBP36.95■■■■□ 3.51
PTP4A3-204ENST00000521578 ZNF608Q9ULD9 1512 aaPredicted RBP36.85■■■■□ 3.49
PTP4A3-204ENST00000521578 ABCA10Q8WWZ4 1543 aa36.81■■■■□ 3.48
PTP4A3-204ENST00000521578 WDR97A6NE52 1622 aa36.79■■■■□ 3.48
PTP4A3-204ENST00000521578 TDRD9Q8NDG6 1382 aaKnown RBP36.78■■■■□ 3.48
PTP4A3-204ENST00000521578 AQRO60306 1485 aaKnown RBP eCLIP36.74■■■■□ 3.474e-7■■■■□ 23.2
PTP4A3-204ENST00000521578 EIF4G3O43432 1585 aaKnown RBP36.7■■■■□ 3.47
PTP4A3-204ENST00000521578 ABCA5Q8WWZ7 1642 aa36.61■■■■□ 3.45
PTP4A3-204ENST00000521578 GAPVD1Q14C86 1478 aa36.6■■■■□ 3.45
PTP4A3-204ENST00000521578 KIF27Q86VH2 1401 aa36.55■■■■□ 3.44
PTP4A3-204ENST00000521578 RUSC2Q8N2Y8 1516 aa36.5■■■■□ 3.43
PTP4A3-204ENST00000521578 GRIN2BQ13224 1484 aa36.49■■■■□ 3.43
PTP4A3-204ENST00000521578 PBRM1Q86U86 1689 aa36.47■■■■□ 3.43
PTP4A3-204ENST00000521578 SNAPC4Q5SXM2 1469 aa36.39■■■■□ 3.42
PTP4A3-204ENST00000521578 ERICH3Q5RHP9 1530 aa36.37■■■■□ 3.41
PTP4A3-204ENST00000521578 IGF1RP08069 1367 aa36.35■■■■□ 3.41
PTP4A3-204ENST00000521578 FAM9AQ8IZU1 332 aaPredicted RBP36.32■■■■□ 3.4
PTP4A3-204ENST00000521578 MAGI1Q96QZ7 1491 aaPredicted RBP36.3■■■■□ 3.4
PTP4A3-204ENST00000521578 EEA1Q15075 1411 aa36.23■■■■□ 3.39
PTP4A3-204ENST00000521578 FBLN2P98095 1184 aa36.23■■■■□ 3.39
PTP4A3-204ENST00000521578 ADAMTS12P58397 1594 aa36.21■■■■□ 3.39
PTP4A3-204ENST00000521578 FHAD1B1AJZ9 1412 aa36.18■■■■□ 3.38
PTP4A3-204ENST00000521578 CHMP7Q8WUX9 453 aaPredicted RBP36.18■■■■□ 3.38
PTP4A3-204ENST00000521578 CSRNP3Q8WYN3 585 aa36.18■■■■□ 3.38
PTP4A3-204ENST00000521578 SYNJ2O15056 1496 aa36.18■■■■□ 3.38
PTP4A3-204ENST00000521578 CUL7Q14999 1698 aa36.16■■■■□ 3.38
PTP4A3-204ENST00000521578 CARMIL1Q5VZK9 1371 aa36.15■■■■□ 3.38
PTP4A3-204ENST00000521578 CHD1O14646 1710 aa36.13■■■■□ 3.37
PTP4A3-204ENST00000521578 GRIN2AQ12879 1464 aa36.03■■■■□ 3.36
PTP4A3-204ENST00000521578 PRXQ9BXM0 1461 aa36■■■■□ 3.35
PTP4A3-204ENST00000521578 RAPGEF2Q9Y4G8 1499 aa35.98■■■■□ 3.35
PTP4A3-204ENST00000521578 OSCARQ8IYS5 282 aa35.94■■■■□ 3.34
PTP4A3-204ENST00000521578 EHMT2Q96KQ7 1210 aa35.87■■■■□ 3.33
PTP4A3-204ENST00000521578 CEP170Q5SW79 1584 aa35.84■■■■□ 3.33
PTP4A3-204ENST00000521578 KIF21BO75037 1637 aa35.83■■■■□ 3.33
PTP4A3-204ENST00000521578 NUP160Q12769 1436 aa35.82■■■■□ 3.33
PTP4A3-204ENST00000521578 CLASP1Q7Z460 1538 aa35.7■■■■□ 3.31
PTP4A3-204ENST00000521578 GOLGA3Q08378 1498 aa35.7■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms