RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 NISCHQ9Y2I1 1504 aa50.14■■■■■ 5.62
HOMER3-204ENST00000539827 CCDC180Q9P1Z9 1646 aa43.47■■■■■ 4.55
HOMER3-204ENST00000539827 ZCCHC6Q5VYS8 1495 aaKnown RBP42.15■■■■■ 4.34
HOMER3-204ENST00000539827 DCAF8L2P0C7V8 631 aa41.59■■■■■ 4.25
HOMER3-204ENST00000539827 SHROOM4Q9ULL8 1493 aa41.36■■■■■ 4.21
HOMER3-204ENST00000539827 DCAF1Q9Y4B6 1507 aa41.32■■■■■ 4.21
HOMER3-204ENST00000539827 ABCC9O60706 1549 aa41.11■■■■■ 4.17
HOMER3-204ENST00000539827 MYO15BQ96JP2 1530 aa40.69■■■■■ 4.1
HOMER3-204ENST00000539827 NACADO15069 1562 aa40.46■■■■■ 4.07
HOMER3-204ENST00000539827 SCRIBQ14160 1630 aa40.23■■■■■ 4.03
HOMER3-204ENST00000539827 RB1CC1Q8TDY2 1594 aa40.08■■■■■ 4.01
HOMER3-204ENST00000539827 SUPT5HO00267 1087 aaKnown RBP39.92■■■■□ 3.98
HOMER3-204ENST00000539827 UNC13AQ9UPW8 1703 aa39.36■■■■□ 3.89
HOMER3-204ENST00000539827 CECR2Q9BXF3 1484 aa39.05■■■■□ 3.84
HOMER3-204ENST00000539827 RSF1Q96T23 1441 aaPredicted RBP39.05■■■■□ 3.84
HOMER3-204ENST00000539827 BICRAQ9NZM4 1560 aa38.93■■■■□ 3.82
HOMER3-204ENST00000539827 PABPN1Q86U42 306 aaKnown RBP eCLIP38.91■■■■□ 3.82
HOMER3-204ENST00000539827 MROH2BQ7Z745 1585 aa38.82■■■■□ 3.8
HOMER3-204ENST00000539827 BAZ1AQ9NRL2 1556 aaPredicted RBP38.65■■■■□ 3.78
HOMER3-204ENST00000539827 WIZO95785 1651 aa38.54■■■■□ 3.76
HOMER3-204ENST00000539827 SMARCA4P51532 1647 aa38.49■■■■□ 3.75
HOMER3-204ENST00000539827 CHIC1Q5VXU3 224 aa38.28■■■■□ 3.72
HOMER3-204ENST00000539827 TOP2AP11388 1531 aaKnown RBP38.05■■■■□ 3.68
HOMER3-204ENST00000539827 PEG3Q9GZU2 1588 aa37.9■■■■□ 3.66
HOMER3-204ENST00000539827 ATAD2BQ9ULI0 1458 aa37.8■■■■□ 3.64
HOMER3-204ENST00000539827 SMARCA2P51531 1590 aa37.74■■■■□ 3.63
HOMER3-204ENST00000539827 CCDC88BA6NC98 1476 aa37.74■■■■□ 3.63
HOMER3-204ENST00000539827 EIF4G1Q04637 1599 aaKnown RBP37.72■■■■□ 3.63
HOMER3-204ENST00000539827 BAZ1BQ9UIG0 1483 aaKnown RBP37.61■■■■□ 3.61
HOMER3-204ENST00000539827 TRIM41Q8WV44 630 aa37.42■■■■□ 3.58
HOMER3-204ENST00000539827 NCAPD3P42695 1498 aa37.37■■■■□ 3.57
HOMER3-204ENST00000539827 HMGXB3Q12766 1538 aa37.31■■■■□ 3.56
HOMER3-204ENST00000539827 CC2D2AQ9P2K1 1620 aa37.13■■■■□ 3.53
HOMER3-204ENST00000539827 ABCC8Q09428 1581 aa37.09■■■■□ 3.53
HOMER3-204ENST00000539827 LOC105371045A0A1W2PR82 267 aa36.93■■■■□ 3.5
HOMER3-204ENST00000539827 FAM9AQ8IZU1 332 aaPredicted RBP36.89■■■■□ 3.5
HOMER3-204ENST00000539827 WRNQ14191 1432 aaPredicted RBP eCLIP36.74■■■■□ 3.47
HOMER3-204ENST00000539827 CFTRP13569 1480 aa36.64■■■■□ 3.46
HOMER3-204ENST00000539827 DNAJC5BQ9UF47 199 aa36.61■■■■□ 3.45
HOMER3-204ENST00000539827 SYNJ1O43426 1573 aa36.6■■■■□ 3.45
HOMER3-204ENST00000539827 CADPSQ9ULU8 1353 aa36.49■■■■□ 3.43
HOMER3-204ENST00000539827 EHMT2Q96KQ7 1210 aa36.47■■■■□ 3.43
HOMER3-204ENST00000539827 SOGA1O94964 1423 aa36.46■■■■□ 3.43
HOMER3-204ENST00000539827 PRDM2Q13029 1718 aa36.42■■■■□ 3.42
HOMER3-204ENST00000539827 TOP2BQ02880 1626 aa36.36■■■■□ 3.41
HOMER3-204ENST00000539827 RUSC2Q8N2Y8 1516 aa36.34■■■■□ 3.41
HOMER3-204ENST00000539827 BIVM-ERCC5R4GMW8 1640 aa36.31■■■■□ 3.4
HOMER3-204ENST00000539827 EEA1Q15075 1411 aa36.26■■■■□ 3.4
HOMER3-204ENST00000539827 CUX1P39880 1505 aa36.26■■■■□ 3.4
HOMER3-204ENST00000539827 NESP48681 1621 aa36.19■■■■□ 3.38
HOMER3-204ENST00000539827 CSRNP3Q8WYN3 585 aa36.18■■■■□ 3.38
HOMER3-204ENST00000539827 FANCD2Q9BXW9 1451 aa36.11■■■■□ 3.37
HOMER3-204ENST00000539827 LAMC3Q9Y6N6 1575 aa36.04■■■■□ 3.36
HOMER3-204ENST00000539827 GOLGA3Q08378 1498 aa35.86■■■■□ 3.33
HOMER3-204ENST00000539827 FGD5Q6ZNL6 1462 aa35.83■■■■□ 3.33
HOMER3-204ENST00000539827 CEP164Q9UPV0 1460 aa35.83■■■■□ 3.33
HOMER3-204ENST00000539827 KIF21BO75037 1637 aa35.82■■■■□ 3.32
HOMER3-204ENST00000539827 UBTFP17480 764 aaKnown RBP35.82■■■■□ 3.32
HOMER3-204ENST00000539827 TNIKQ9UKE5 1360 aa35.8■■■■□ 3.32
HOMER3-204ENST00000539827 PDS5BQ9NTI5 1447 aa35.79■■■■□ 3.32
HOMER3-204ENST00000539827 DNMBPQ6XZF7 1577 aa35.79■■■■□ 3.32
HOMER3-204ENST00000539827 KIF27Q86VH2 1401 aa35.77■■■■□ 3.32
HOMER3-204ENST00000539827 TOPBP1Q92547 1522 aa35.75■■■■□ 3.31
HOMER3-204ENST00000539827 KIF21AQ7Z4S6 1674 aa35.69■■■■□ 3.3
HOMER3-204ENST00000539827 CEP162Q5TB80 1403 aa35.67■■■■□ 3.3
HOMER3-204ENST00000539827 CUX2O14529 1486 aa35.67■■■■□ 3.3
HOMER3-204ENST00000539827 RAPGEF2Q9Y4G8 1499 aa35.67■■■■□ 3.3
HOMER3-204ENST00000539827 URB2Q14146 1524 aaKnown RBP35.66■■■■□ 3.3
HOMER3-204ENST00000539827 POLA1P09884 1462 aaPredicted RBP35.59■■■■□ 3.29
HOMER3-204ENST00000539827 PRXQ9BXM0 1461 aa35.58■■■■□ 3.29
HOMER3-204ENST00000539827 RAD54L2Q9Y4B4 1467 aa35.57■■■■□ 3.28
HOMER3-204ENST00000539827 PCGF6Q9BYE7 350 aa35.51■■■■□ 3.27
HOMER3-204ENST00000539827 ERICH3Q5RHP9 1530 aa35.5■■■■□ 3.27
HOMER3-204ENST00000539827 IGF1RP08069 1367 aa35.46■■■■□ 3.27
HOMER3-204ENST00000539827 ABCA10Q8WWZ4 1543 aa35.45■■■■□ 3.27
HOMER3-204ENST00000539827 MRC2Q9UBG0 1479 aa35.33■■■■□ 3.25
HOMER3-204ENST00000539827 CLIP1P30622 1438 aa35.33■■■■□ 3.25
HOMER3-204ENST00000539827 TRIM26Q12899 539 aaPredicted RBP35.33■■■■□ 3.25
HOMER3-204ENST00000539827 RANGAP1P46060 587 aaPredicted RBP35.3■■■■□ 3.24
HOMER3-204ENST00000539827 WDR97A6NE52 1622 aa35.3■■■■□ 3.24
HOMER3-204ENST00000539827 CARMIL1Q5VZK9 1371 aa35.29■■■■□ 3.24
HOMER3-204ENST00000539827 PPARGC1BQ86YN6 1023 aaKnown RBP35.27■■■■□ 3.24
HOMER3-204ENST00000539827 TDRD9Q8NDG6 1382 aaKnown RBP35.2■■■■□ 3.23
HOMER3-204ENST00000539827 ERCC6Q03468 1493 aa35.17■■■■□ 3.22
HOMER3-204ENST00000539827 TARBP1Q13395 1621 aaKnown RBP35.16■■■■□ 3.22
HOMER3-204ENST00000539827 ABCA5Q8WWZ7 1642 aa35.14■■■■□ 3.22
HOMER3-204ENST00000539827 WDR62O43379 1518 aa35.1■■■■□ 3.21
HOMER3-204ENST00000539827 GAPVD1Q14C86 1478 aa35.09■■■■□ 3.21
HOMER3-204ENST00000539827 CUL7Q14999 1698 aa35.07■■■■□ 3.2
HOMER3-204ENST00000539827 VPS8Q8N3P4 1428 aa35.03■■■■□ 3.2
HOMER3-204ENST00000539827 THOC2Q8NI27 1593 aaKnown RBP34.97■■■■□ 3.19
HOMER3-204ENST00000539827 ARAP1Q96P48 1450 aa34.96■■■■□ 3.19
HOMER3-204ENST00000539827 TTBK1Q5TCY1 1321 aaPredicted RBP34.94■■■■□ 3.18
HOMER3-204ENST00000539827 IFT140Q96RY7 1462 aa34.93■■■■□ 3.18
HOMER3-204ENST00000539827 AQRO60306 1485 aaKnown RBP eCLIP34.92■■■■□ 3.18
HOMER3-204ENST00000539827 ARHGAP35Q9NRY4 1499 aa34.89■■■■□ 3.18
HOMER3-204ENST00000539827 PBRM1Q86U86 1689 aa34.87■■■■□ 3.17
HOMER3-204ENST00000539827 ZNF608Q9ULD9 1512 aaPredicted RBP34.84■■■■□ 3.17
HOMER3-204ENST00000539827 APLP2Q06481 763 aa34.76■■■■□ 3.15
HOMER3-204ENST00000539827 CTTNBP2Q8WZ74 1663 aa34.76■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms