Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
HMGCS2P54868 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.14■■□□□ 1.77
HMGCS2P54868 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
HMGCS2P54868 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC26.14■■□□□ 1.77
HMGCS2P54868 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.13■■□□□ 1.77
HMGCS2P54868 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC26.13■■□□□ 1.77
HMGCS2P54868 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.13■■□□□ 1.77
HMGCS2P54868 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
HMGCS2P54868 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 AC123595.1-201ENST00000440769 1046 ntBASIC26.13■■□□□ 1.77
HMGCS2P54868 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC26.13■■□□□ 1.77
HMGCS2P54868 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HMGCS2P54868 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC26.13■■□□□ 1.77
HMGCS2P54868 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGCS2P54868 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC26.12■■□□□ 1.77
HMGCS2P54868 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGCS2P54868 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC26.12■■□□□ 1.77
HMGCS2P54868 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
HMGCS2P54868 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC26.12■■□□□ 1.77
HMGCS2P54868 AC092437.1-201ENST00000624794 1048 ntBASIC26.12■■□□□ 1.77
HMGCS2P54868 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC26.12■■□□□ 1.77
HMGCS2P54868 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HMGCS2P54868 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGCS2P54868 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGCS2P54868 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HMGCS2P54868 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGCS2P54868 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.11■■□□□ 1.77
HMGCS2P54868 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.11■■□□□ 1.77
HMGCS2P54868 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
HMGCS2P54868 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC26.11■■□□□ 1.77
HMGCS2P54868 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.11■■□□□ 1.77
HMGCS2P54868 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HMGCS2P54868 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC26.11■■□□□ 1.77
HMGCS2P54868 AL137784.2-201ENST00000607332 1000 ntBASIC26.11■■□□□ 1.77
HMGCS2P54868 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC26.11■■□□□ 1.77
HMGCS2P54868 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
HMGCS2P54868 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGCS2P54868 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.1■■□□□ 1.77
HMGCS2P54868 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC26.1■■□□□ 1.77
HMGCS2P54868 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC26.1■■□□□ 1.77
HMGCS2P54868 AL354811.1-201ENST00000610286 706 ntBASIC26.1■■□□□ 1.77
HMGCS2P54868 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.1■■□□□ 1.77
HMGCS2P54868 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGCS2P54868 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.09■■□□□ 1.77
HMGCS2P54868 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.09■■□□□ 1.77
HMGCS2P54868 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGCS2P54868 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.08■■□□□ 1.77
HMGCS2P54868 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC26.08■■□□□ 1.77
HMGCS2P54868 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.08■■□□□ 1.77
HMGCS2P54868 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC26.08■■□□□ 1.77
HMGCS2P54868 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC26.08■■□□□ 1.77
HMGCS2P54868 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.08■■□□□ 1.77
HMGCS2P54868 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HMGCS2P54868 CCDC92B-201ENST00000575506 885 ntBASIC26.08■■□□□ 1.77
HMGCS2P54868 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC26.08■■□□□ 1.77
HMGCS2P54868 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGCS2P54868 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
HMGCS2P54868 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGCS2P54868 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.08■■□□□ 1.77
HMGCS2P54868 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
HMGCS2P54868 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC26.07■■□□□ 1.76
HMGCS2P54868 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC26.07■■□□□ 1.76
HMGCS2P54868 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
HMGCS2P54868 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HMGCS2P54868 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
HMGCS2P54868 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 OR2I1P-207ENST00000453522 948 ntBASIC26.06■■□□□ 1.76
HMGCS2P54868 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC26.06■■□□□ 1.76
HMGCS2P54868 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
HMGCS2P54868 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
HMGCS2P54868 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms