RNA–Protein interactions for RNA: ENST00000638536.1

SCN1B-206, Transcript of sodium voltage-gated channel beta subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN1B, Length 1,600 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1B-206ENST00000638536 NISCHQ9Y2I1 1504 aa52.99■■■■■ 6.07
SCN1B-206ENST00000638536 CCDC180Q9P1Z9 1646 aa47.03■■■■■ 5.12
SCN1B-206ENST00000638536 ABCC9O60706 1549 aa46.12■■■■■ 4.97
SCN1B-206ENST00000638536 DCAF8L2P0C7V8 631 aa44.34■■■■■ 4.69
SCN1B-206ENST00000638536 RB1CC1Q8TDY2 1594 aa44.25■■■■■ 4.67
SCN1B-206ENST00000638536 NACADO15069 1562 aa44.2■■■■■ 4.67
SCN1B-206ENST00000638536 ZCCHC6Q5VYS8 1495 aaKnown RBP44.14■■■■■ 4.66
SCN1B-206ENST00000638536 MYO15BQ96JP2 1530 aa43.91■■■■■ 4.62
SCN1B-206ENST00000638536 DCAF1Q9Y4B6 1507 aa43.76■■■■■ 4.6
SCN1B-206ENST00000638536 UNC13AQ9UPW8 1703 aa43.44■■■■■ 4.54
SCN1B-206ENST00000638536 PABPN1Q86U42 306 aaKnown RBP eCLIP43.15■■■■■ 4.5
SCN1B-206ENST00000638536 BICRAQ9NZM4 1560 aa43.05■■■■■ 4.48
SCN1B-206ENST00000638536 SCRIBQ14160 1630 aa43.03■■■■■ 4.48
SCN1B-206ENST00000638536 DNAJC5BQ9UF47 199 aa42.42■■■■■ 4.38
SCN1B-206ENST00000638536 SHROOM4Q9ULL8 1493 aa42.35■■■■■ 4.37
SCN1B-206ENST00000638536 EIF4G1Q04637 1599 aaKnown RBP41.85■■■■■ 4.29
SCN1B-206ENST00000638536 CC2D2AQ9P2K1 1620 aa41.7■■■■■ 4.27
SCN1B-206ENST00000638536 CECR2Q9BXF3 1484 aa41.39■■■■■ 4.22
SCN1B-206ENST00000638536 SMARCA4P51532 1647 aa41.12■■■■■ 4.17
SCN1B-206ENST00000638536 BAZ1AQ9NRL2 1556 aaPredicted RBP41.02■■■■■ 4.16
SCN1B-206ENST00000638536 MROH2BQ7Z745 1585 aa40.91■■■■■ 4.14
SCN1B-206ENST00000638536 ATAD2BQ9ULI0 1458 aa40.89■■■■■ 4.14
SCN1B-206ENST00000638536 NCAPD3P42695 1498 aa40.82■■■■■ 4.13
SCN1B-206ENST00000638536 SMARCA2P51531 1590 aa40.76■■■■■ 4.12
SCN1B-206ENST00000638536 PEG3Q9GZU2 1588 aa40.68■■■■■ 4.1
SCN1B-206ENST00000638536 HMGXB3Q12766 1538 aa40.59■■■■■ 4.09
SCN1B-206ENST00000638536 BAZ1BQ9UIG0 1483 aaKnown RBP40.52■■■■■ 4.08
SCN1B-206ENST00000638536 WIZO95785 1651 aa40.49■■■■■ 4.07
SCN1B-206ENST00000638536 RSF1Q96T23 1441 aaPredicted RBP40.42■■■■■ 4.06
SCN1B-206ENST00000638536 NESP48681 1621 aa39.97■■■■□ 3.99
SCN1B-206ENST00000638536 TOP2AP11388 1531 aaKnown RBP39.96■■■■□ 3.99
SCN1B-206ENST00000638536 LAMC3Q9Y6N6 1575 aa39.72■■■■□ 3.95
SCN1B-206ENST00000638536 ERCC6Q03468 1493 aa39.66■■■■□ 3.94
SCN1B-206ENST00000638536 CADPSQ9ULU8 1353 aa39.64■■■■□ 3.94
SCN1B-206ENST00000638536 CCDC88BA6NC98 1476 aa39.55■■■■□ 3.92
SCN1B-206ENST00000638536 SUPT5HO00267 1087 aaKnown RBP39.47■■■■□ 3.91
SCN1B-206ENST00000638536 KIF21AQ7Z4S6 1674 aa39.47■■■■□ 3.91
SCN1B-206ENST00000638536 PDS5BQ9NTI5 1447 aa39.43■■■■□ 3.9
SCN1B-206ENST00000638536 CFTRP13569 1480 aa39.43■■■■□ 3.9
SCN1B-206ENST00000638536 THOC2Q8NI27 1593 aaKnown RBP39.28■■■■□ 3.88
SCN1B-206ENST00000638536 FANCD2Q9BXW9 1451 aa39.2■■■■□ 3.87
SCN1B-206ENST00000638536 CUX2O14529 1486 aa39.18■■■■□ 3.86
SCN1B-206ENST00000638536 PRDM2Q13029 1718 aa39.14■■■■□ 3.86
SCN1B-206ENST00000638536 CEP164Q9UPV0 1460 aa39.12■■■■□ 3.85
SCN1B-206ENST00000638536 MRC2Q9UBG0 1479 aa39.06■■■■□ 3.84
SCN1B-206ENST00000638536 WDR62O43379 1518 aa38.95■■■■□ 3.83
SCN1B-206ENST00000638536 URB2Q14146 1524 aaKnown RBP38.86■■■■□ 3.81
SCN1B-206ENST00000638536 TOPBP1Q92547 1522 aa38.6■■■■□ 3.77
SCN1B-206ENST00000638536 DNMBPQ6XZF7 1577 aa38.52■■■■□ 3.76
SCN1B-206ENST00000638536 ABCC8Q09428 1581 aa38.47■■■■□ 3.75
SCN1B-206ENST00000638536 CUX1P39880 1505 aa38.35■■■■□ 3.73
SCN1B-206ENST00000638536 IFT140Q96RY7 1462 aa38.29■■■■□ 3.72
SCN1B-206ENST00000638536 POLA1P09884 1462 aaPredicted RBP38.28■■■■□ 3.72
SCN1B-206ENST00000638536 ZNF608Q9ULD9 1512 aaPredicted RBP38.24■■■■□ 3.71
SCN1B-206ENST00000638536 TARBP1Q13395 1621 aaKnown RBP38.2■■■■□ 3.71
SCN1B-206ENST00000638536 FGD5Q6ZNL6 1462 aa38.19■■■■□ 3.7
SCN1B-206ENST00000638536 RAD54L2Q9Y4B4 1467 aa38.17■■■■□ 3.7
SCN1B-206ENST00000638536 SOGA1O94964 1423 aa38.11■■■■□ 3.69
SCN1B-206ENST00000638536 WRNQ14191 1432 aaPredicted RBP eCLIP38.06■■■■□ 3.68
SCN1B-206ENST00000638536 SYNJ1O43426 1573 aa38.04■■■■□ 3.68
SCN1B-206ENST00000638536 DNAJC5Q9H3Z4 198 aa38.04■■■■□ 3.68
SCN1B-206ENST00000638536 EIF4G3O43432 1585 aaKnown RBP38.03■■■■□ 3.68
SCN1B-206ENST00000638536 AQRO60306 1485 aaKnown RBP eCLIP38.02■■■■□ 3.68
SCN1B-206ENST00000638536 TOP2BQ02880 1626 aa37.98■■■■□ 3.67
SCN1B-206ENST00000638536 BIVM-ERCC5R4GMW8 1640 aa37.98■■■■□ 3.67
SCN1B-206ENST00000638536 TDRD9Q8NDG6 1382 aaKnown RBP37.94■■■■□ 3.66
SCN1B-206ENST00000638536 WDR97A6NE52 1622 aa37.89■■■■□ 3.66
SCN1B-206ENST00000638536 ABCA10Q8WWZ4 1543 aa37.79■■■■□ 3.64
SCN1B-206ENST00000638536 ABCA5Q8WWZ7 1642 aa37.66■■■■□ 3.62
SCN1B-206ENST00000638536 GAPVD1Q14C86 1478 aa37.66■■■■□ 3.62
SCN1B-206ENST00000638536 OSCARQ8IYS5 282 aa37.62■■■■□ 3.61
SCN1B-206ENST00000638536 GRIN2BQ13224 1484 aa37.61■■■■□ 3.61
SCN1B-206ENST00000638536 SNAPC4Q5SXM2 1469 aa37.61■■■■□ 3.61
SCN1B-206ENST00000638536 PBRM1Q86U86 1689 aa37.61■■■■□ 3.61
SCN1B-206ENST00000638536 CHD1O14646 1710 aa37.59■■■■□ 3.61
SCN1B-206ENST00000638536 FBLN2P98095 1184 aa37.53■■■■□ 3.6
SCN1B-206ENST00000638536 MAGI1Q96QZ7 1491 aaPredicted RBP37.49■■■■□ 3.59
SCN1B-206ENST00000638536 CHMP7Q8WUX9 453 aaPredicted RBP37.38■■■■□ 3.57
SCN1B-206ENST00000638536 SYNJ2O15056 1496 aa37.38■■■■□ 3.57
SCN1B-206ENST00000638536 ERICH3Q5RHP9 1530 aa37.31■■■■□ 3.56
SCN1B-206ENST00000638536 ADAMTS12P58397 1594 aa37.29■■■■□ 3.56
SCN1B-206ENST00000638536 KIF27Q86VH2 1401 aa37.22■■■■□ 3.55
SCN1B-206ENST00000638536 TRIM41Q8WV44 630 aa37.2■■■■□ 3.55
SCN1B-206ENST00000638536 FHAD1B1AJZ9 1412 aa37.19■■■■□ 3.54
SCN1B-206ENST00000638536 GRIN2AQ12879 1464 aa37.16■■■■□ 3.54
SCN1B-206ENST00000638536 IGF1RP08069 1367 aa37.16■■■■□ 3.54
SCN1B-206ENST00000638536 CLASP1Q7Z460 1538 aa37.13■■■■□ 3.53
SCN1B-206ENST00000638536 RUSC2Q8N2Y8 1516 aa37.09■■■■□ 3.53
SCN1B-206ENST00000638536 RIMBP3CA6NJZ7 1639 aa37.08■■■■□ 3.53
SCN1B-206ENST00000638536 RIMBP3BA6NNM3 1639 aa37.08■■■■□ 3.53
SCN1B-206ENST00000638536 RIMBP3Q9UFD9 1639 aa37.08■■■■□ 3.53
SCN1B-206ENST00000638536 ARHGEF11O15085 1522 aa37.05■■■■□ 3.52
SCN1B-206ENST00000638536 CEP170Q5SW79 1584 aa37.04■■■■□ 3.52
SCN1B-206ENST00000638536 NUP160Q12769 1436 aa36.99■■■■□ 3.51
SCN1B-206ENST00000638536 CUL7Q14999 1698 aa36.97■■■■□ 3.51
SCN1B-206ENST00000638536 CARMIL1Q5VZK9 1371 aa36.9■■■■□ 3.5
SCN1B-206ENST00000638536 CHIC1Q5VXU3 224 aa36.85■■■■□ 3.49
SCN1B-206ENST00000638536 ARAP1Q96P48 1450 aa36.78■■■■□ 3.48
SCN1B-206ENST00000638536 CYB5RLQ6IPT4 315 aa36.74■■■■□ 3.47
SCN1B-206ENST00000638536 ERCC6L2Q5T890 1561 aa36.74■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms