Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC022616.5-201ENST00000518796 181 ntBASIC21.82■■□□□ 1.08
HDAC3O15379 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC3O15379 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.82■■□□□ 1.08
HDAC3O15379 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC3O15379 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.82■■□□□ 1.08
HDAC3O15379 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC3O15379 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC3O15379 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC3O15379 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC3O15379 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.81■■□□□ 1.08
HDAC3O15379 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.81■■□□□ 1.08
HDAC3O15379 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC3O15379 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC3O15379 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HDAC3O15379 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
HDAC3O15379 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC3O15379 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC3O15379 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC3O15379 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC3O15379 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.8■■□□□ 1.08
HDAC3O15379 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.8■■□□□ 1.08
HDAC3O15379 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC3O15379 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
HDAC3O15379 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC3O15379 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.79■■□□□ 1.08
HDAC3O15379 AC019171.1-201ENST00000601251 1056 ntBASIC21.79■■□□□ 1.08
HDAC3O15379 AC129492.7-201ENST00000622992 756 ntBASIC21.79■■□□□ 1.08
HDAC3O15379 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
HDAC3O15379 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC3O15379 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC3O15379 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC3O15379 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HDAC3O15379 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 AC007375.3-201ENST00000600936 2314 ntBASIC21.78■■□□□ 1.08
HDAC3O15379 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.78■■□□□ 1.08
HDAC3O15379 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.78■■□□□ 1.08
HDAC3O15379 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HDAC3O15379 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC3O15379 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
HDAC3O15379 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.78■■□□□ 1.08
HDAC3O15379 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.77■■□□□ 1.08
HDAC3O15379 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC3O15379 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.77■■□□□ 1.08
HDAC3O15379 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.07
HDAC3O15379 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC3O15379 AL353803.4-201ENST00000565882 1934 ntBASIC21.76■■□□□ 1.07
HDAC3O15379 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC3O15379 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC3O15379 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC3O15379 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.76■■□□□ 1.07
HDAC3O15379 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC3O15379 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
HDAC3O15379 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
HDAC3O15379 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC3O15379 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC3O15379 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC3O15379 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC3O15379 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC3O15379 AC139530.1-201ENST00000575312 1977 ntBASIC21.76■■□□□ 1.07
HDAC3O15379 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.75■■□□□ 1.07
HDAC3O15379 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC3O15379 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
HDAC3O15379 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.75■■□□□ 1.07
HDAC3O15379 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.75■■□□□ 1.07
HDAC3O15379 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.75■■□□□ 1.07
HDAC3O15379 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC3O15379 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC3O15379 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC3O15379 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
HDAC3O15379 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC3O15379 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC3O15379 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC3O15379 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC3O15379 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.74■■□□□ 1.07
HDAC3O15379 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC3O15379 AC092053.2-201ENST00000640557 1818 ntBASIC21.74■■□□□ 1.07
HDAC3O15379 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC3O15379 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.74■■□□□ 1.07
HDAC3O15379 U85056.1-201ENST00000616429 682 ntBASIC21.74■■□□□ 1.07
HDAC3O15379 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC3O15379 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.74■■□□□ 1.07
HDAC3O15379 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC3O15379 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
HDAC3O15379 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms