RNA–Protein interactions for RNA: ENST00000376751.7

RNF39-202, Transcript of ring finger protein 39, humanhuman

TSL 1 (best) BASIC

Gene RNF39, Length 1,970 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39-202ENST00000376751 NISCHQ9Y2I1 1504 aa47.18■■■■■ 5.14
RNF39-202ENST00000376751 CCDC180Q9P1Z9 1646 aa40.63■■■■■ 4.09
RNF39-202ENST00000376751 ZCCHC6Q5VYS8 1495 aaKnown RBP39.82■■■■□ 3.97
RNF39-202ENST00000376751 SHROOM4Q9ULL8 1493 aa39.38■■■■□ 3.89
RNF39-202ENST00000376751 DCAF1Q9Y4B6 1507 aa38.86■■■■□ 3.81
RNF39-202ENST00000376751 DCAF8L2P0C7V8 631 aa38.84■■■■□ 3.81
RNF39-202ENST00000376751 SUPT5HO00267 1087 aaKnown RBP38.24■■■■□ 3.71
RNF39-202ENST00000376751 MYO15BQ96JP2 1530 aa38.01■■■■□ 3.68
RNF39-202ENST00000376751 ABCC9O60706 1549 aa37.89■■■■□ 3.66
RNF39-202ENST00000376751 SCRIBQ14160 1630 aa37.73■■■■□ 3.63
RNF39-202ENST00000376751 NACADO15069 1562 aa37.62■■■■□ 3.61
RNF39-202ENST00000376751 RB1CC1Q8TDY2 1594 aa37.13■■■■□ 3.53
RNF39-202ENST00000376751 CHIC1Q5VXU3 224 aa37■■■■□ 3.51
RNF39-202ENST00000376751 RSF1Q96T23 1441 aaPredicted RBP37■■■■□ 3.51
RNF39-202ENST00000376751 CECR2Q9BXF3 1484 aa36.75■■■■□ 3.47
RNF39-202ENST00000376751 UNC13AQ9UPW8 1703 aa36.64■■■■□ 3.46
RNF39-202ENST00000376751 MROH2BQ7Z745 1585 aa36.6■■■■□ 3.45
RNF39-202ENST00000376751 WIZO95785 1651 aa36.38■■■■□ 3.41
RNF39-202ENST00000376751 BAZ1AQ9NRL2 1556 aaPredicted RBP36.31■■■■□ 3.4
RNF39-202ENST00000376751 BICRAQ9NZM4 1560 aa36.16■■■■□ 3.38
RNF39-202ENST00000376751 SMARCA4P51532 1647 aa36.12■■■■□ 3.37
RNF39-202ENST00000376751 PABPN1Q86U42 306 aaKnown RBP eCLIP35.96■■■■□ 3.35
RNF39-202ENST00000376751 TOP2AP11388 1531 aaKnown RBP35.88■■■■□ 3.33
RNF39-202ENST00000376751 EIF4G1Q04637 1599 aaKnown RBP35.75■■■■□ 3.31
RNF39-202ENST00000376751 LOC105371045A0A1W2PR82 267 aa35.74■■■■□ 3.31
RNF39-202ENST00000376751 TRIM41Q8WV44 630 aa35.74■■■■□ 3.31
RNF39-202ENST00000376751 SMARCA2P51531 1590 aa35.64■■■■□ 3.3
RNF39-202ENST00000376751 CCDC88BA6NC98 1476 aa35.6■■■■□ 3.29
RNF39-202ENST00000376751 PEG3Q9GZU2 1588 aa35.54■■■■□ 3.28
RNF39-202ENST00000376751 FAM9AQ8IZU1 332 aaPredicted RBP35.31■■■■□ 3.24
RNF39-202ENST00000376751 ATAD2BQ9ULI0 1458 aa35.29■■■■□ 3.24
RNF39-202ENST00000376751 ABCC8Q09428 1581 aa35.25■■■■□ 3.23
RNF39-202ENST00000376751 BAZ1BQ9UIG0 1483 aaKnown RBP35.13■■■■□ 3.21
RNF39-202ENST00000376751 PCGF6Q9BYE7 350 aa34.97■■■■□ 3.19
RNF39-202ENST00000376751 EHMT2Q96KQ7 1210 aa34.92■■■■□ 3.18
RNF39-202ENST00000376751 HMGXB3Q12766 1538 aa34.78■■■■□ 3.16
RNF39-202ENST00000376751 NCAPD3P42695 1498 aa34.75■■■■□ 3.15
RNF39-202ENST00000376751 WRNQ14191 1432 aaPredicted RBP eCLIP34.75■■■■□ 3.15
RNF39-202ENST00000376751 SOGA1O94964 1423 aa34.73■■■■□ 3.15
RNF39-202ENST00000376751 SYNJ1O43426 1573 aa34.69■■■■□ 3.14
RNF39-202ENST00000376751 HRCP23327 699 aa34.62■■■■□ 3.13
RNF39-202ENST00000376751 RUSC2Q8N2Y8 1516 aa34.61■■■■□ 3.13
RNF39-202ENST00000376751 TRIM26Q12899 539 aaPredicted RBP34.58■■■■□ 3.13
RNF39-202ENST00000376751 EEA1Q15075 1411 aa34.56■■■■□ 3.12
RNF39-202ENST00000376751 CSRNP3Q8WYN3 585 aa34.42■■■■□ 3.1
RNF39-202ENST00000376751 TOP2BQ02880 1626 aa34.37■■■■□ 3.09
RNF39-202ENST00000376751 BIVM-ERCC5R4GMW8 1640 aa34.31■■■■□ 3.08
RNF39-202ENST00000376751 TNIKQ9UKE5 1360 aa34.3■■■■□ 3.08
RNF39-202ENST00000376751 CEP162Q5TB80 1403 aa34.28■■■■□ 3.08
RNF39-202ENST00000376751 CFTRP13569 1480 aa34.27■■■■□ 3.08
RNF39-202ENST00000376751 GOLGA3Q08378 1498 aa34.26■■■■□ 3.07
RNF39-202ENST00000376751 CC2D2AQ9P2K1 1620 aa34.25■■■■□ 3.07
RNF39-202ENST00000376751 KIF21BO75037 1637 aa34.2■■■■□ 3.07
RNF39-202ENST00000376751 PRDM2Q13029 1718 aa34.16■■■■□ 3.06
RNF39-202ENST00000376751 CUX1P39880 1505 aa34.15■■■■□ 3.06
RNF39-202ENST00000376751 CEP164Q9UPV0 1460 aa34.15■■■■□ 3.06
RNF39-202ENST00000376751 UBTFP17480 764 aaKnown RBP34.11■■■■□ 3.05
RNF39-202ENST00000376751 PPARGC1BQ86YN6 1023 aaKnown RBP34.08■■■■□ 3.05
RNF39-202ENST00000376751 CADPSQ9ULU8 1353 aa33.97■■■■□ 3.03
RNF39-202ENST00000376751 RAPGEF2Q9Y4G8 1499 aa33.96■■■■□ 3.03
RNF39-202ENST00000376751 PRXQ9BXM0 1461 aa33.79■■■■□ 3
RNF39-202ENST00000376751 CLIP1P30622 1438 aa33.78■■■■□ 3
RNF39-202ENST00000376751 ERICH3Q5RHP9 1530 aa33.77■■■■□ 3
RNF39-202ENST00000376751 KIF27Q86VH2 1401 aa33.74■■■□□ 2.99
RNF39-202ENST00000376751 FANCD2Q9BXW9 1451 aa33.65■■■□□ 2.98
RNF39-202ENST00000376751 TTBK1Q5TCY1 1321 aaPredicted RBP33.64■■■□□ 2.98
RNF39-202ENST00000376751 FGD5Q6ZNL6 1462 aa33.61■■■□□ 2.97
RNF39-202ENST00000376751 NESP48681 1621 aa33.59■■■□□ 2.97
RNF39-202ENST00000376751 VPS8Q8N3P4 1428 aa33.59■■■□□ 2.97
RNF39-202ENST00000376751 CUX2O14529 1486 aa33.55■■■□□ 2.96
RNF39-202ENST00000376751 ZEB1P37275 1124 aaPredicted RBP33.52■■■□□ 2.96
RNF39-202ENST00000376751 RANGAP1P46060 587 aaPredicted RBP33.49■■■□□ 2.95
RNF39-202ENST00000376751 DNMBPQ6XZF7 1577 aa33.47■■■□□ 2.95
RNF39-202ENST00000376751 IGF1RP08069 1367 aa33.42■■■□□ 2.94
RNF39-202ENST00000376751 LAMC3Q9Y6N6 1575 aa33.42■■■□□ 2.94
RNF39-202ENST00000376751 ARAP1Q96P48 1450 aa33.41■■■□□ 2.94
RNF39-202ENST00000376751 TOPBP1Q92547 1522 aa33.39■■■□□ 2.94
RNF39-202ENST00000376751 DNAJC5BQ9UF47 199 aa33.36■■■□□ 2.93
RNF39-202ENST00000376751 POLA1P09884 1462 aaPredicted RBP33.31■■■□□ 2.92
RNF39-202ENST00000376751 RAD54L2Q9Y4B4 1467 aa33.3■■■□□ 2.92
RNF39-202ENST00000376751 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.27■■■□□ 2.92
RNF39-202ENST00000376751 ABCA10Q8WWZ4 1543 aa33.26■■■□□ 2.91
RNF39-202ENST00000376751 CARMIL1Q5VZK9 1371 aa33.25■■■□□ 2.91
RNF39-202ENST00000376751 URB2Q14146 1524 aaKnown RBP33.24■■■□□ 2.91
RNF39-202ENST00000376751 ARHGAP35Q9NRY4 1499 aa33.21■■■□□ 2.91
RNF39-202ENST00000376751 APLP2Q06481 763 aa33.17■■■□□ 2.9
RNF39-202ENST00000376751 KIF21AQ7Z4S6 1674 aa33.14■■■□□ 2.9
RNF39-202ENST00000376751 WDR97A6NE52 1622 aa33.14■■■□□ 2.9
RNF39-202ENST00000376751 CCER1Q8TC90 406 aaPredicted RBP33.13■■■□□ 2.89
RNF39-202ENST00000376751 PDS5BQ9NTI5 1447 aa33.12■■■□□ 2.89
RNF39-202ENST00000376751 CUL7Q14999 1698 aa33.01■■■□□ 2.88
RNF39-202ENST00000376751 ABCA5Q8WWZ7 1642 aa32.96■■■□□ 2.87
RNF39-202ENST00000376751 KANK4Q5T7N3 995 aaPredicted RBP32.96■■■□□ 2.87
RNF39-202ENST00000376751 HNRNPUL2Q1KMD3 747 aaKnown RBP32.92■■■□□ 2.86
RNF39-202ENST00000376751 TDRD9Q8NDG6 1382 aaKnown RBP32.87■■■□□ 2.85
RNF39-202ENST00000376751 CTTNBP2Q8WZ74 1663 aa32.85■■■□□ 2.85
RNF39-202ENST00000376751 TARBP1Q13395 1621 aaKnown RBP32.84■■■□□ 2.85
RNF39-202ENST00000376751 GAPVD1Q14C86 1478 aa32.82■■■□□ 2.85
RNF39-202ENST00000376751 TIAM1Q13009 1591 aa32.77■■■□□ 2.84
RNF39-202ENST00000376751 MAP3K1Q13233 1512 aa32.74■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms