Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHGA3Q9Y5H0 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHGA3Q9Y5H0 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
PCDHGA3Q9Y5H0 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.86■■□□□ 1.89
PCDHGA3Q9Y5H0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHGA3Q9Y5H0 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHGA3Q9Y5H0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHGA3Q9Y5H0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHGA3Q9Y5H0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
PCDHGA3Q9Y5H0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC26.84■■□□□ 1.89
PCDHGA3Q9Y5H0 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHGA3Q9Y5H0 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
PCDHGA3Q9Y5H0 RPS2P35-201ENST00000443417 897 ntBASIC26.81■■□□□ 1.88
PCDHGA3Q9Y5H0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.8■■□□□ 1.88
PCDHGA3Q9Y5H0 CAHM-201ENST00000604200 896 ntBASIC26.78■■□□□ 1.88
PCDHGA3Q9Y5H0 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.78■■□□□ 1.88
PCDHGA3Q9Y5H0 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PCDHGA3Q9Y5H0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHGA3Q9Y5H0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHGA3Q9Y5H0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHGA3Q9Y5H0 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHGA3Q9Y5H0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.72■■□□□ 1.87
PCDHGA3Q9Y5H0 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.72■■□□□ 1.87
PCDHGA3Q9Y5H0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.71■■□□□ 1.87
PCDHGA3Q9Y5H0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHGA3Q9Y5H0 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PCDHGA3Q9Y5H0 AL133380.1-201ENST00000506013 324 ntBASIC26.7■■□□□ 1.86
PCDHGA3Q9Y5H0 AL391121.1-201ENST00000607967 1349 ntBASIC26.69■■□□□ 1.86
PCDHGA3Q9Y5H0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHGA3Q9Y5H0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHGA3Q9Y5H0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
PCDHGA3Q9Y5H0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHGA3Q9Y5H0 AP006261.1-201ENST00000584783 668 ntBASIC26.64■■□□□ 1.86
PCDHGA3Q9Y5H0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.59■■□□□ 1.85
PCDHGA3Q9Y5H0 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
PCDHGA3Q9Y5H0 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.59■■□□□ 1.85
PCDHGA3Q9Y5H0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.58■■□□□ 1.85
PCDHGA3Q9Y5H0 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.57■■□□□ 1.84
PCDHGA3Q9Y5H0 AL162393.1-201ENST00000437852 946 ntBASIC26.57■■□□□ 1.84
PCDHGA3Q9Y5H0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHGA3Q9Y5H0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.54■■□□□ 1.84
PCDHGA3Q9Y5H0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHGA3Q9Y5H0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.53■■□□□ 1.84
PCDHGA3Q9Y5H0 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHGA3Q9Y5H0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHGA3Q9Y5H0 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHGA3Q9Y5H0 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.52■■□□□ 1.84
PCDHGA3Q9Y5H0 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHGA3Q9Y5H0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.51■■□□□ 1.83
PCDHGA3Q9Y5H0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.51■■□□□ 1.83
PCDHGA3Q9Y5H0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.51■■□□□ 1.83
PCDHGA3Q9Y5H0 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.5■■□□□ 1.83
PCDHGA3Q9Y5H0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
PCDHGA3Q9Y5H0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
PCDHGA3Q9Y5H0 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHGA3Q9Y5H0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
PCDHGA3Q9Y5H0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHGA3Q9Y5H0 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHGA3Q9Y5H0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHGA3Q9Y5H0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC26.48■■□□□ 1.83
PCDHGA3Q9Y5H0 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHGA3Q9Y5H0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHGA3Q9Y5H0 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHGA3Q9Y5H0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.46■■□□□ 1.83
PCDHGA3Q9Y5H0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHGA3Q9Y5H0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHGA3Q9Y5H0 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHGA3Q9Y5H0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.43■■□□□ 1.82
PCDHGA3Q9Y5H0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHGA3Q9Y5H0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHGA3Q9Y5H0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHGA3Q9Y5H0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHGA3Q9Y5H0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.4■■□□□ 1.82
PCDHGA3Q9Y5H0 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHGA3Q9Y5H0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.39■■□□□ 1.82
PCDHGA3Q9Y5H0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHGA3Q9Y5H0 MIR3665-201ENST00000578708 105 ntBASIC26.39■■□□□ 1.82
PCDHGA3Q9Y5H0 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHGA3Q9Y5H0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.37■■□□□ 1.81
PCDHGA3Q9Y5H0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.34■■□□□ 1.81
PCDHGA3Q9Y5H0 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHGA3Q9Y5H0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHGA3Q9Y5H0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHGA3Q9Y5H0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.33■■□□□ 1.81
PCDHGA3Q9Y5H0 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.33■■□□□ 1.81
PCDHGA3Q9Y5H0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
PCDHGA3Q9Y5H0 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHGA3Q9Y5H0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHGA3Q9Y5H0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHGA3Q9Y5H0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHGA3Q9Y5H0 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHGA3Q9Y5H0 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PCDHGA3Q9Y5H0 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
PCDHGA3Q9Y5H0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
PCDHGA3Q9Y5H0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.29■■□□□ 1.8
PCDHGA3Q9Y5H0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.29■■□□□ 1.8
PCDHGA3Q9Y5H0 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.29■■□□□ 1.8
PCDHGA3Q9Y5H0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHGA3Q9Y5H0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.28■■□□□ 1.8
PCDHGA3Q9Y5H0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms