Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SHANK1Q9Y566 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
SHANK1Q9Y566 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.6■■□□□ 1.69
SHANK1Q9Y566 ILK-212ENST00000532063 1617 ntTSL 2 BASIC25.6■■□□□ 1.69
SHANK1Q9Y566 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.59■■□□□ 1.69
SHANK1Q9Y566 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHANK1Q9Y566 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHANK1Q9Y566 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.56■■□□□ 1.68
SHANK1Q9Y566 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHANK1Q9Y566 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHANK1Q9Y566 AL133380.1-201ENST00000506013 324 ntBASIC25.54■■□□□ 1.68
SHANK1Q9Y566 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.52■■□□□ 1.68
SHANK1Q9Y566 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK1Q9Y566 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK1Q9Y566 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK1Q9Y566 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
SHANK1Q9Y566 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.5■■□□□ 1.67
SHANK1Q9Y566 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHANK1Q9Y566 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
SHANK1Q9Y566 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.47■■□□□ 1.67
SHANK1Q9Y566 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SHANK1Q9Y566 MIR7108-201ENST00000614319 87 ntBASIC25.45■■□□□ 1.66
SHANK1Q9Y566 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.44■■□□□ 1.66
SHANK1Q9Y566 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SHANK1Q9Y566 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.43■■□□□ 1.66
SHANK1Q9Y566 ABHD17AP4-201ENST00000411545 909 ntBASIC25.42■■□□□ 1.66
SHANK1Q9Y566 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SHANK1Q9Y566 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.41■■□□□ 1.66
SHANK1Q9Y566 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.4■■□□□ 1.66
SHANK1Q9Y566 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.39■■□□□ 1.66
SHANK1Q9Y566 HLA-V-202ENST00000446817 847 ntBASIC25.39■■□□□ 1.65
SHANK1Q9Y566 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SHANK1Q9Y566 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SHANK1Q9Y566 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SHANK1Q9Y566 MIR3665-201ENST00000578708 105 ntBASIC25.38■■□□□ 1.65
SHANK1Q9Y566 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.36■■□□□ 1.65
SHANK1Q9Y566 DUX4L28-201ENST00000623687 678 ntBASIC25.36■■□□□ 1.65
SHANK1Q9Y566 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHANK1Q9Y566 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.34■■□□□ 1.65
SHANK1Q9Y566 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.34■■□□□ 1.65
SHANK1Q9Y566 AC087741.3-201ENST00000624270 1347 ntBASIC25.32■■□□□ 1.64
SHANK1Q9Y566 AC044849.2-201ENST00000606596 710 ntBASIC25.32■■□□□ 1.64
SHANK1Q9Y566 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
SHANK1Q9Y566 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.3■■□□□ 1.64
SHANK1Q9Y566 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHANK1Q9Y566 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHANK1Q9Y566 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHANK1Q9Y566 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SHANK1Q9Y566 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHANK1Q9Y566 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.21■■□□□ 1.63
SHANK1Q9Y566 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
SHANK1Q9Y566 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHANK1Q9Y566 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SHANK1Q9Y566 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.19■■□□□ 1.62
SHANK1Q9Y566 AC005559.1-201ENST00000589661 871 ntBASIC25.19■■□□□ 1.62
SHANK1Q9Y566 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.18■■□□□ 1.62
SHANK1Q9Y566 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
SHANK1Q9Y566 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SHANK1Q9Y566 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.17■■□□□ 1.62
SHANK1Q9Y566 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.17■■□□□ 1.62
SHANK1Q9Y566 MIR762-201ENST00000390236 83 ntBASIC25.17■■□□□ 1.62
SHANK1Q9Y566 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
SHANK1Q9Y566 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SHANK1Q9Y566 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.14■■□□□ 1.62
SHANK1Q9Y566 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SHANK1Q9Y566 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.12■■□□□ 1.61
SHANK1Q9Y566 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.12■■□□□ 1.61
SHANK1Q9Y566 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.11■■□□□ 1.61
SHANK1Q9Y566 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.11■■□□□ 1.61
SHANK1Q9Y566 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.11■■□□□ 1.61
SHANK1Q9Y566 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK1Q9Y566 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHANK1Q9Y566 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.07■■□□□ 1.6
SHANK1Q9Y566 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.07■■□□□ 1.6
SHANK1Q9Y566 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SHANK1Q9Y566 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.05■■□□□ 1.6
SHANK1Q9Y566 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHANK1Q9Y566 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SHANK1Q9Y566 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.03■■□□□ 1.6
SHANK1Q9Y566 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.03■■□□□ 1.6
SHANK1Q9Y566 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.03■■□□□ 1.6
SHANK1Q9Y566 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.01■■□□□ 1.59
SHANK1Q9Y566 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
SHANK1Q9Y566 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SHANK1Q9Y566 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.01■■□□□ 1.59
SHANK1Q9Y566 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25■■□□□ 1.59
SHANK1Q9Y566 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25■■□□□ 1.59
SHANK1Q9Y566 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25■■□□□ 1.59
SHANK1Q9Y566 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SHANK1Q9Y566 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC24.99■■□□□ 1.59
SHANK1Q9Y566 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.98■■□□□ 1.59
SHANK1Q9Y566 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SHANK1Q9Y566 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SHANK1Q9Y566 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SHANK1Q9Y566 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SHANK1Q9Y566 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.95■■□□□ 1.58
SHANK1Q9Y566 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC24.95■■□□□ 1.58
SHANK1Q9Y566 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SHANK1Q9Y566 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SHANK1Q9Y566 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.93■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms