Protein–RNA interactions for Protein: Q9NZU5

LMCD1, LIM and cysteine-rich domains protein 1, humanhuman

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1Q9NZU5 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.35■■■□□ 2.45
LMCD1Q9NZU5 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.33■■■□□ 2.45
LMCD1Q9NZU5 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.33■■■□□ 2.45
LMCD1Q9NZU5 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.32■■■□□ 2.44
LMCD1Q9NZU5 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
LMCD1Q9NZU5 MIR3665-201ENST00000578708 105 ntBASIC30.32■■■□□ 2.44
LMCD1Q9NZU5 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
LMCD1Q9NZU5 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
LMCD1Q9NZU5 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.28■■■□□ 2.44
LMCD1Q9NZU5 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
LMCD1Q9NZU5 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
LMCD1Q9NZU5 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
LMCD1Q9NZU5 AL133380.1-201ENST00000506013 324 ntBASIC30.25■■■□□ 2.43
LMCD1Q9NZU5 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.25■■■□□ 2.43
LMCD1Q9NZU5 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.23■■■□□ 2.43
LMCD1Q9NZU5 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
LMCD1Q9NZU5 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.21■■■□□ 2.43
LMCD1Q9NZU5 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
LMCD1Q9NZU5 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
LMCD1Q9NZU5 AC145285.7-201ENST00000614819 1539 ntBASIC30.18■■■□□ 2.42
LMCD1Q9NZU5 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.16■■■□□ 2.42
LMCD1Q9NZU5 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.16■■■□□ 2.42
LMCD1Q9NZU5 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
LMCD1Q9NZU5 AC087741.3-201ENST00000624270 1347 ntBASIC30.14■■■□□ 2.42
LMCD1Q9NZU5 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
LMCD1Q9NZU5 HLA-V-202ENST00000446817 847 ntBASIC30.09■■■□□ 2.41
LMCD1Q9NZU5 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.08■■■□□ 2.41
LMCD1Q9NZU5 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.08■■■□□ 2.41
LMCD1Q9NZU5 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.08■■■□□ 2.41
LMCD1Q9NZU5 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
LMCD1Q9NZU5 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
LMCD1Q9NZU5 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
LMCD1Q9NZU5 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
LMCD1Q9NZU5 AC044849.2-201ENST00000606596 710 ntBASIC30.05■■■□□ 2.4
LMCD1Q9NZU5 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.03■■■□□ 2.4
LMCD1Q9NZU5 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
LMCD1Q9NZU5 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.03■■■□□ 2.4
LMCD1Q9NZU5 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.02■■■□□ 2.4
LMCD1Q9NZU5 DUX4L28-201ENST00000623687 678 ntBASIC30.02■■■□□ 2.4
LMCD1Q9NZU5 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.01■■■□□ 2.39
LMCD1Q9NZU5 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
LMCD1Q9NZU5 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
LMCD1Q9NZU5 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.98■■■□□ 2.39
LMCD1Q9NZU5 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
LMCD1Q9NZU5 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
LMCD1Q9NZU5 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.94■■■□□ 2.38
LMCD1Q9NZU5 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.91■■■□□ 2.38
LMCD1Q9NZU5 MIR762-201ENST00000390236 83 ntBASIC29.9■■■□□ 2.38
LMCD1Q9NZU5 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.9■■■□□ 2.38
LMCD1Q9NZU5 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.9■■■□□ 2.38
LMCD1Q9NZU5 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.9■■■□□ 2.38
LMCD1Q9NZU5 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
LMCD1Q9NZU5 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
LMCD1Q9NZU5 AC005559.1-201ENST00000589661 871 ntBASIC29.88■■■□□ 2.37
LMCD1Q9NZU5 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.85■■■□□ 2.37
LMCD1Q9NZU5 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.85■■■□□ 2.37
LMCD1Q9NZU5 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
LMCD1Q9NZU5 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.84■■■□□ 2.37
LMCD1Q9NZU5 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.82■■■□□ 2.36
LMCD1Q9NZU5 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
LMCD1Q9NZU5 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
LMCD1Q9NZU5 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
LMCD1Q9NZU5 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.8■■■□□ 2.36
LMCD1Q9NZU5 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.8■■■□□ 2.36
LMCD1Q9NZU5 ZNRF2P2-203ENST00000454624 420 ntBASIC29.8■■■□□ 2.36
LMCD1Q9NZU5 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.8■■■□□ 2.36
LMCD1Q9NZU5 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
LMCD1Q9NZU5 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.78■■■□□ 2.36
LMCD1Q9NZU5 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
LMCD1Q9NZU5 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.77■■■□□ 2.36
LMCD1Q9NZU5 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
LMCD1Q9NZU5 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.77■■■□□ 2.36
LMCD1Q9NZU5 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.77■■■□□ 2.36
LMCD1Q9NZU5 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
LMCD1Q9NZU5 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
LMCD1Q9NZU5 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.75■■■□□ 2.35
LMCD1Q9NZU5 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.73■■■□□ 2.35
LMCD1Q9NZU5 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.72■■■□□ 2.35
LMCD1Q9NZU5 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
LMCD1Q9NZU5 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
LMCD1Q9NZU5 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.69■■■□□ 2.34
LMCD1Q9NZU5 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
LMCD1Q9NZU5 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
LMCD1Q9NZU5 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.62■■■□□ 2.33
LMCD1Q9NZU5 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.62■■■□□ 2.33
LMCD1Q9NZU5 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.6■■■□□ 2.33
LMCD1Q9NZU5 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
LMCD1Q9NZU5 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.6■■■□□ 2.33
LMCD1Q9NZU5 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
LMCD1Q9NZU5 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
LMCD1Q9NZU5 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
LMCD1Q9NZU5 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
LMCD1Q9NZU5 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
LMCD1Q9NZU5 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.57■■■□□ 2.32
LMCD1Q9NZU5 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.55■■■□□ 2.32
LMCD1Q9NZU5 MIR4449-201ENST00000578365 66 ntBASIC29.55■■■□□ 2.32
LMCD1Q9NZU5 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
LMCD1Q9NZU5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
LMCD1Q9NZU5 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
LMCD1Q9NZU5 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.53■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms