Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.49■■■□□ 2.47
RC3H2Q9HBD1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
RC3H2Q9HBD1 AP006261.1-201ENST00000584783 668 ntBASIC30.46■■■□□ 2.47
RC3H2Q9HBD1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
RC3H2Q9HBD1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.43■■■□□ 2.46
RC3H2Q9HBD1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RC3H2Q9HBD1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
RC3H2Q9HBD1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
RC3H2Q9HBD1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.37■■■□□ 2.45
RC3H2Q9HBD1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
RC3H2Q9HBD1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
RC3H2Q9HBD1 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.35■■■□□ 2.45
RC3H2Q9HBD1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
RC3H2Q9HBD1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.32■■■□□ 2.44
RC3H2Q9HBD1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
RC3H2Q9HBD1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.3■■■□□ 2.44
RC3H2Q9HBD1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.26■■■□□ 2.43
RC3H2Q9HBD1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.23■■■□□ 2.43
RC3H2Q9HBD1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
RC3H2Q9HBD1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
RC3H2Q9HBD1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.2■■■□□ 2.43
RC3H2Q9HBD1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
RC3H2Q9HBD1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.19■■■□□ 2.42
RC3H2Q9HBD1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RC3H2Q9HBD1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
RC3H2Q9HBD1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
RC3H2Q9HBD1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RC3H2Q9HBD1 MIR3665-201ENST00000578708 105 ntBASIC30.15■■■□□ 2.42
RC3H2Q9HBD1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RC3H2Q9HBD1 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
RC3H2Q9HBD1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
RC3H2Q9HBD1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RC3H2Q9HBD1 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
RC3H2Q9HBD1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RC3H2Q9HBD1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RC3H2Q9HBD1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
RC3H2Q9HBD1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.09■■■□□ 2.41
RC3H2Q9HBD1 DUX4L28-201ENST00000623687 678 ntBASIC30.09■■■□□ 2.41
RC3H2Q9HBD1 AC087741.3-201ENST00000624270 1347 ntBASIC30.08■■■□□ 2.41
RC3H2Q9HBD1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
RC3H2Q9HBD1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.08■■■□□ 2.41
RC3H2Q9HBD1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.07■■■□□ 2.4
RC3H2Q9HBD1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.07■■■□□ 2.4
RC3H2Q9HBD1 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RC3H2Q9HBD1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H2Q9HBD1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H2Q9HBD1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RC3H2Q9HBD1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
RC3H2Q9HBD1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RC3H2Q9HBD1 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.02■■■□□ 2.4
RC3H2Q9HBD1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RC3H2Q9HBD1 MIR762-201ENST00000390236 83 ntBASIC30■■■□□ 2.39
RC3H2Q9HBD1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RC3H2Q9HBD1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
RC3H2Q9HBD1 ABHD17AP4-201ENST00000411545 909 ntBASIC29.99■■■□□ 2.39
RC3H2Q9HBD1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
RC3H2Q9HBD1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
RC3H2Q9HBD1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
RC3H2Q9HBD1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
RC3H2Q9HBD1 MIR7108-201ENST00000614319 87 ntBASIC29.93■■■□□ 2.38
RC3H2Q9HBD1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.92■■■□□ 2.38
RC3H2Q9HBD1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.91■■■□□ 2.38
RC3H2Q9HBD1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
RC3H2Q9HBD1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.91■■■□□ 2.38
RC3H2Q9HBD1 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
RC3H2Q9HBD1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC29.9■■■□□ 2.38
RC3H2Q9HBD1 AC005559.1-201ENST00000589661 871 ntBASIC29.9■■■□□ 2.38
RC3H2Q9HBD1 AC044849.2-201ENST00000606596 710 ntBASIC29.89■■■□□ 2.38
RC3H2Q9HBD1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.89■■■□□ 2.37
RC3H2Q9HBD1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.88■■■□□ 2.37
RC3H2Q9HBD1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
RC3H2Q9HBD1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
RC3H2Q9HBD1 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.86■■■□□ 2.37
RC3H2Q9HBD1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.86■■■□□ 2.37
RC3H2Q9HBD1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
RC3H2Q9HBD1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.84■■■□□ 2.37
RC3H2Q9HBD1 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
RC3H2Q9HBD1 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
RC3H2Q9HBD1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.79■■■□□ 2.36
RC3H2Q9HBD1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
RC3H2Q9HBD1 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.76■■■□□ 2.35
RC3H2Q9HBD1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.76■■■□□ 2.35
RC3H2Q9HBD1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.75■■■□□ 2.35
RC3H2Q9HBD1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
RC3H2Q9HBD1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.75■■■□□ 2.35
RC3H2Q9HBD1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.74■■■□□ 2.35
RC3H2Q9HBD1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.73■■■□□ 2.35
RC3H2Q9HBD1 WASH5P-204ENST00000632292 975 ntBASIC29.72■■■□□ 2.35
RC3H2Q9HBD1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
RC3H2Q9HBD1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RC3H2Q9HBD1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
RC3H2Q9HBD1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.67■■■□□ 2.34
RC3H2Q9HBD1 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.66■■■□□ 2.34
RC3H2Q9HBD1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 595.4 ms