Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
UPF3AQ9H1J1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.66■■■□□ 2.66
UPF3AQ9H1J1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.65■■■□□ 2.66
UPF3AQ9H1J1 AP006261.1-201ENST00000584783 668 ntBASIC31.63■■■□□ 2.65
UPF3AQ9H1J1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
UPF3AQ9H1J1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
UPF3AQ9H1J1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
UPF3AQ9H1J1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.57■■■□□ 2.64
UPF3AQ9H1J1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
UPF3AQ9H1J1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.52■■■□□ 2.64
UPF3AQ9H1J1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.5■■■□□ 2.63
UPF3AQ9H1J1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
UPF3AQ9H1J1 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.5■■■□□ 2.63
UPF3AQ9H1J1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
UPF3AQ9H1J1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.47■■■□□ 2.63
UPF3AQ9H1J1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
UPF3AQ9H1J1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
UPF3AQ9H1J1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.44■■■□□ 2.62
UPF3AQ9H1J1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
UPF3AQ9H1J1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.4■■■□□ 2.62
UPF3AQ9H1J1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.4■■■□□ 2.62
UPF3AQ9H1J1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
UPF3AQ9H1J1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
UPF3AQ9H1J1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
UPF3AQ9H1J1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
UPF3AQ9H1J1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.36■■■□□ 2.61
UPF3AQ9H1J1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
UPF3AQ9H1J1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.35■■■□□ 2.61
UPF3AQ9H1J1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
UPF3AQ9H1J1 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
UPF3AQ9H1J1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
UPF3AQ9H1J1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.33■■■□□ 2.61
UPF3AQ9H1J1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.33■■■□□ 2.61
UPF3AQ9H1J1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
UPF3AQ9H1J1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
UPF3AQ9H1J1 MIR3665-201ENST00000578708 105 ntBASIC31.32■■■□□ 2.6
UPF3AQ9H1J1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
UPF3AQ9H1J1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
UPF3AQ9H1J1 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
UPF3AQ9H1J1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
UPF3AQ9H1J1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.28■■■□□ 2.6
UPF3AQ9H1J1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
UPF3AQ9H1J1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.25■■■□□ 2.59
UPF3AQ9H1J1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
UPF3AQ9H1J1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
UPF3AQ9H1J1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
UPF3AQ9H1J1 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
UPF3AQ9H1J1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.24■■■□□ 2.59
UPF3AQ9H1J1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
UPF3AQ9H1J1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.22■■■□□ 2.59
UPF3AQ9H1J1 AC087741.3-201ENST00000624270 1347 ntBASIC31.22■■■□□ 2.59
UPF3AQ9H1J1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
UPF3AQ9H1J1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
UPF3AQ9H1J1 DUX4L28-201ENST00000623687 678 ntBASIC31.21■■■□□ 2.59
UPF3AQ9H1J1 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.19■■■□□ 2.58
UPF3AQ9H1J1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
UPF3AQ9H1J1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
UPF3AQ9H1J1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
UPF3AQ9H1J1 MIR762-201ENST00000390236 83 ntBASIC31.16■■■□□ 2.58
UPF3AQ9H1J1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
UPF3AQ9H1J1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
UPF3AQ9H1J1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
UPF3AQ9H1J1 ABHD17AP4-201ENST00000411545 909 ntBASIC31.13■■■□□ 2.57
UPF3AQ9H1J1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.1■■■□□ 2.57
UPF3AQ9H1J1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
UPF3AQ9H1J1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.08■■■□□ 2.57
UPF3AQ9H1J1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.08■■■□□ 2.57
UPF3AQ9H1J1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
UPF3AQ9H1J1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
UPF3AQ9H1J1 AC005559.1-201ENST00000589661 871 ntBASIC31.07■■■□□ 2.56
UPF3AQ9H1J1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.06■■■□□ 2.56
UPF3AQ9H1J1 MIR7108-201ENST00000614319 87 ntBASIC31.06■■■□□ 2.56
UPF3AQ9H1J1 AC044849.2-201ENST00000606596 710 ntBASIC31.05■■■□□ 2.56
UPF3AQ9H1J1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
UPF3AQ9H1J1 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
UPF3AQ9H1J1 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
UPF3AQ9H1J1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.03■■■□□ 2.56
UPF3AQ9H1J1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
UPF3AQ9H1J1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
UPF3AQ9H1J1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.02■■■□□ 2.56
UPF3AQ9H1J1 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.01■■■□□ 2.55
UPF3AQ9H1J1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
UPF3AQ9H1J1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.99■■■□□ 2.55
UPF3AQ9H1J1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.97■■■□□ 2.55
UPF3AQ9H1J1 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
UPF3AQ9H1J1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.91■■■□□ 2.54
UPF3AQ9H1J1 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.91■■■□□ 2.54
UPF3AQ9H1J1 WASH5P-204ENST00000632292 975 ntBASIC30.89■■■□□ 2.54
UPF3AQ9H1J1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
UPF3AQ9H1J1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.87■■■□□ 2.53
UPF3AQ9H1J1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.87■■■□□ 2.53
UPF3AQ9H1J1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
UPF3AQ9H1J1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
UPF3AQ9H1J1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.86■■■□□ 2.53
UPF3AQ9H1J1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.86■■■□□ 2.53
UPF3AQ9H1J1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
UPF3AQ9H1J1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
UPF3AQ9H1J1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
UPF3AQ9H1J1 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
UPF3AQ9H1J1 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.8■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms