Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 MIR4449-201ENST00000578365 66 ntBASIC28.44■■■□□ 2.14
CFAP54Q96N23 MIR3665-201ENST00000578708 105 ntBASIC28.42■■■□□ 2.14
CFAP54Q96N23 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC28.42■■■□□ 2.14
CFAP54Q96N23 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.4■■■□□ 2.14
CFAP54Q96N23 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CFAP54Q96N23 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CFAP54Q96N23 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.35■■■□□ 2.13
CFAP54Q96N23 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CFAP54Q96N23 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CFAP54Q96N23 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CFAP54Q96N23 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.33■■■□□ 2.13
CFAP54Q96N23 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.31■■■□□ 2.12
CFAP54Q96N23 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.29■■■□□ 2.12
CFAP54Q96N23 AC044849.2-201ENST00000606596 710 ntBASIC28.29■■■□□ 2.12
CFAP54Q96N23 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CFAP54Q96N23 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CFAP54Q96N23 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
CFAP54Q96N23 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
CFAP54Q96N23 HSD17B1P1-201ENST00000590052 955 ntBASIC28.22■■■□□ 2.11
CFAP54Q96N23 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.22■■■□□ 2.11
CFAP54Q96N23 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.22■■■□□ 2.11
CFAP54Q96N23 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.22■■■□□ 2.11
CFAP54Q96N23 DUX4L28-201ENST00000623687 678 ntBASIC28.22■■■□□ 2.11
CFAP54Q96N23 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.19■■■□□ 2.1
CFAP54Q96N23 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CFAP54Q96N23 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CFAP54Q96N23 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.16■■■□□ 2.1
CFAP54Q96N23 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CFAP54Q96N23 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CFAP54Q96N23 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CFAP54Q96N23 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
CFAP54Q96N23 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
CFAP54Q96N23 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CFAP54Q96N23 ZNRF2P2-203ENST00000454624 420 ntBASIC28.04■■■□□ 2.08
CFAP54Q96N23 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.04■■■□□ 2.08
CFAP54Q96N23 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CFAP54Q96N23 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
CFAP54Q96N23 MIR639-201ENST00000384974 98 ntBASIC28.02■■■□□ 2.08
CFAP54Q96N23 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CFAP54Q96N23 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CFAP54Q96N23 AC005559.1-201ENST00000589661 871 ntBASIC27.95■■■□□ 2.06
CFAP54Q96N23 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.94■■■□□ 2.06
CFAP54Q96N23 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.94■■■□□ 2.06
CFAP54Q96N23 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.93■■■□□ 2.06
CFAP54Q96N23 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.92■■■□□ 2.06
CFAP54Q96N23 MIR762-201ENST00000390236 83 ntBASIC27.9■■■□□ 2.06
CFAP54Q96N23 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.9■■■□□ 2.06
CFAP54Q96N23 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
CFAP54Q96N23 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
CFAP54Q96N23 AL133380.1-201ENST00000506013 324 ntBASIC27.89■■■□□ 2.06
CFAP54Q96N23 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.89■■■□□ 2.06
CFAP54Q96N23 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.06
CFAP54Q96N23 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
CFAP54Q96N23 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
CFAP54Q96N23 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
CFAP54Q96N23 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.86■■■□□ 2.05
CFAP54Q96N23 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.85■■■□□ 2.05
CFAP54Q96N23 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
CFAP54Q96N23 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC27.85■■■□□ 2.05
CFAP54Q96N23 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.83■■■□□ 2.05
CFAP54Q96N23 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
CFAP54Q96N23 AC145285.7-201ENST00000614819 1539 ntBASIC27.8■■■□□ 2.04
CFAP54Q96N23 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CFAP54Q96N23 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.8■■■□□ 2.04
CFAP54Q96N23 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
CFAP54Q96N23 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.77■■■□□ 2.04
CFAP54Q96N23 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.77■■■□□ 2.04
CFAP54Q96N23 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.77■■■□□ 2.04
CFAP54Q96N23 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CFAP54Q96N23 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CFAP54Q96N23 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
CFAP54Q96N23 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.73■■■□□ 2.03
CFAP54Q96N23 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
CFAP54Q96N23 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CFAP54Q96N23 MIR3648-2-201ENST00000581792 180 ntBASIC27.71■■■□□ 2.03
CFAP54Q96N23 MIR3648-1-201ENST00000615959 180 ntBASIC27.71■■■□□ 2.03
CFAP54Q96N23 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.71■■■□□ 2.03
CFAP54Q96N23 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CFAP54Q96N23 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.68■■■□□ 2.02
CFAP54Q96N23 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
CFAP54Q96N23 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.66■■■□□ 2.02
CFAP54Q96N23 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
CFAP54Q96N23 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC27.64■■■□□ 2.02
CFAP54Q96N23 AC016575.1-201ENST00000607026 382 ntBASIC27.64■■■□□ 2.01
CFAP54Q96N23 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CFAP54Q96N23 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.62■■■□□ 2.01
CFAP54Q96N23 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CFAP54Q96N23 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.61■■■□□ 2.01
CFAP54Q96N23 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC27.6■■■□□ 2.01
CFAP54Q96N23 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
CFAP54Q96N23 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.58■■■□□ 2.01
CFAP54Q96N23 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CFAP54Q96N23 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
CFAP54Q96N23 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.53■■■□□ 2
CFAP54Q96N23 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
CFAP54Q96N23 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms