Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 MIR7108-201ENST00000614319 87 ntBASIC31.36■■■□□ 2.61
TRIM43Q96BQ3 ABHD17AP4-201ENST00000411545 909 ntBASIC31.35■■■□□ 2.61
TRIM43Q96BQ3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
TRIM43Q96BQ3 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.34■■■□□ 2.61
TRIM43Q96BQ3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
TRIM43Q96BQ3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
TRIM43Q96BQ3 AL133380.1-201ENST00000506013 324 ntBASIC31.32■■■□□ 2.6
TRIM43Q96BQ3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
TRIM43Q96BQ3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
TRIM43Q96BQ3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.29■■■□□ 2.6
TRIM43Q96BQ3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.25■■■□□ 2.59
TRIM43Q96BQ3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.25■■■□□ 2.59
TRIM43Q96BQ3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.24■■■□□ 2.59
TRIM43Q96BQ3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
TRIM43Q96BQ3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.22■■■□□ 2.59
TRIM43Q96BQ3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.21■■■□□ 2.59
TRIM43Q96BQ3 MIR3665-201ENST00000578708 105 ntBASIC31.21■■■□□ 2.59
TRIM43Q96BQ3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
TRIM43Q96BQ3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
TRIM43Q96BQ3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.19■■■□□ 2.58
TRIM43Q96BQ3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.18■■■□□ 2.58
TRIM43Q96BQ3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
TRIM43Q96BQ3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
TRIM43Q96BQ3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
TRIM43Q96BQ3 AC087741.3-201ENST00000624270 1347 ntBASIC31.15■■■□□ 2.58
TRIM43Q96BQ3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.12■■■□□ 2.57
TRIM43Q96BQ3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
TRIM43Q96BQ3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.09■■■□□ 2.57
TRIM43Q96BQ3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.09■■■□□ 2.57
TRIM43Q96BQ3 DUX4L28-201ENST00000623687 678 ntBASIC31.09■■■□□ 2.57
TRIM43Q96BQ3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
TRIM43Q96BQ3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
TRIM43Q96BQ3 HLA-V-202ENST00000446817 847 ntBASIC31.05■■■□□ 2.56
TRIM43Q96BQ3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.05■■■□□ 2.56
TRIM43Q96BQ3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
TRIM43Q96BQ3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
TRIM43Q96BQ3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
TRIM43Q96BQ3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
TRIM43Q96BQ3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.99■■■□□ 2.55
TRIM43Q96BQ3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.99■■■□□ 2.55
TRIM43Q96BQ3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.98■■■□□ 2.55
TRIM43Q96BQ3 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.96■■■□□ 2.55
TRIM43Q96BQ3 AC044849.2-201ENST00000606596 710 ntBASIC30.95■■■□□ 2.55
TRIM43Q96BQ3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.95■■■□□ 2.54
TRIM43Q96BQ3 MIR762-201ENST00000390236 83 ntBASIC30.94■■■□□ 2.54
TRIM43Q96BQ3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
TRIM43Q96BQ3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
TRIM43Q96BQ3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.92■■■□□ 2.54
TRIM43Q96BQ3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.92■■■□□ 2.54
TRIM43Q96BQ3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
TRIM43Q96BQ3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.91■■■□□ 2.54
TRIM43Q96BQ3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.91■■■□□ 2.54
TRIM43Q96BQ3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
TRIM43Q96BQ3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.88■■■□□ 2.53
TRIM43Q96BQ3 AC005559.1-201ENST00000589661 871 ntBASIC30.87■■■□□ 2.53
TRIM43Q96BQ3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.86■■■□□ 2.53
TRIM43Q96BQ3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
TRIM43Q96BQ3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
TRIM43Q96BQ3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.83■■■□□ 2.53
TRIM43Q96BQ3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
TRIM43Q96BQ3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
TRIM43Q96BQ3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
TRIM43Q96BQ3 ZNRF2P2-203ENST00000454624 420 ntBASIC30.79■■■□□ 2.52
TRIM43Q96BQ3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.79■■■□□ 2.52
TRIM43Q96BQ3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.78■■■□□ 2.52
TRIM43Q96BQ3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.76■■■□□ 2.51
TRIM43Q96BQ3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.76■■■□□ 2.51
TRIM43Q96BQ3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.76■■■□□ 2.51
TRIM43Q96BQ3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.75■■■□□ 2.51
TRIM43Q96BQ3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.75■■■□□ 2.51
TRIM43Q96BQ3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
TRIM43Q96BQ3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
TRIM43Q96BQ3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.72■■■□□ 2.51
TRIM43Q96BQ3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
TRIM43Q96BQ3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.68■■■□□ 2.5
TRIM43Q96BQ3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.68■■■□□ 2.5
TRIM43Q96BQ3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
TRIM43Q96BQ3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.66■■■□□ 2.5
TRIM43Q96BQ3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
TRIM43Q96BQ3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
TRIM43Q96BQ3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
TRIM43Q96BQ3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
TRIM43Q96BQ3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
TRIM43Q96BQ3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
TRIM43Q96BQ3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.6■■■□□ 2.49
TRIM43Q96BQ3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.59■■■□□ 2.49
TRIM43Q96BQ3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
TRIM43Q96BQ3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.58■■■□□ 2.49
TRIM43Q96BQ3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.58■■■□□ 2.49
TRIM43Q96BQ3 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.57■■■□□ 2.48
TRIM43Q96BQ3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
TRIM43Q96BQ3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.56■■■□□ 2.48
TRIM43Q96BQ3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
TRIM43Q96BQ3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
TRIM43Q96BQ3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.55■■■□□ 2.48
TRIM43Q96BQ3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.52■■■□□ 2.48
TRIM43Q96BQ3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
TRIM43Q96BQ3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM43Q96BQ3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
TRIM43Q96BQ3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms