Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPUSD3Q6P087 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPUSD3Q6P087 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPUSD3Q6P087 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPUSD3Q6P087 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPUSD3Q6P087 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.59■■□□□ 1.69
RPUSD3Q6P087 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.58■■□□□ 1.69
RPUSD3Q6P087 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.57■■□□□ 1.68
RPUSD3Q6P087 AL133380.1-201ENST00000506013 324 ntBASIC25.56■■□□□ 1.68
RPUSD3Q6P087 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RPUSD3Q6P087 AL391121.1-201ENST00000607967 1349 ntBASIC25.55■■□□□ 1.68
RPUSD3Q6P087 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
RPUSD3Q6P087 AP006261.1-201ENST00000584783 668 ntBASIC25.51■■□□□ 1.67
RPUSD3Q6P087 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RPUSD3Q6P087 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
RPUSD3Q6P087 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.46■■□□□ 1.67
RPUSD3Q6P087 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.45■■□□□ 1.66
RPUSD3Q6P087 AL162393.1-201ENST00000437852 946 ntBASIC25.42■■□□□ 1.66
RPUSD3Q6P087 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
RPUSD3Q6P087 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.41■■□□□ 1.66
RPUSD3Q6P087 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RPUSD3Q6P087 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
RPUSD3Q6P087 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.38■■□□□ 1.65
RPUSD3Q6P087 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.38■■□□□ 1.65
RPUSD3Q6P087 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
RPUSD3Q6P087 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.35■■□□□ 1.65
RPUSD3Q6P087 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RPUSD3Q6P087 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RPUSD3Q6P087 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.31■■□□□ 1.64
RPUSD3Q6P087 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RPUSD3Q6P087 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.31■■□□□ 1.64
RPUSD3Q6P087 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.3■■□□□ 1.64
RPUSD3Q6P087 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RPUSD3Q6P087 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RPUSD3Q6P087 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RPUSD3Q6P087 MIR3665-201ENST00000578708 105 ntBASIC25.28■■□□□ 1.64
RPUSD3Q6P087 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RPUSD3Q6P087 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.27■■□□□ 1.64
RPUSD3Q6P087 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RPUSD3Q6P087 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.25■■□□□ 1.63
RPUSD3Q6P087 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RPUSD3Q6P087 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RPUSD3Q6P087 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RPUSD3Q6P087 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RPUSD3Q6P087 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.22■■□□□ 1.63
RPUSD3Q6P087 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RPUSD3Q6P087 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
RPUSD3Q6P087 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.19■■□□□ 1.62
RPUSD3Q6P087 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.18■■□□□ 1.62
RPUSD3Q6P087 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.18■■□□□ 1.62
RPUSD3Q6P087 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RPUSD3Q6P087 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.16■■□□□ 1.62
RPUSD3Q6P087 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RPUSD3Q6P087 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
RPUSD3Q6P087 AC087741.3-201ENST00000624270 1347 ntBASIC25.12■■□□□ 1.61
RPUSD3Q6P087 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RPUSD3Q6P087 MIR762-201ENST00000390236 83 ntBASIC25.11■■□□□ 1.61
RPUSD3Q6P087 DUX4L28-201ENST00000623687 678 ntBASIC25.1■■□□□ 1.61
RPUSD3Q6P087 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RPUSD3Q6P087 AC005559.1-201ENST00000589661 871 ntBASIC25.06■■□□□ 1.6
RPUSD3Q6P087 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
RPUSD3Q6P087 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.04■■□□□ 1.6
RPUSD3Q6P087 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.04■■□□□ 1.6
RPUSD3Q6P087 AC044849.2-201ENST00000606596 710 ntBASIC25.04■■□□□ 1.6
RPUSD3Q6P087 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RPUSD3Q6P087 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC25.03■■□□□ 1.6
RPUSD3Q6P087 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.03■■□□□ 1.6
RPUSD3Q6P087 ABHD17AP4-201ENST00000411545 909 ntBASIC25.02■■□□□ 1.6
RPUSD3Q6P087 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.01■■□□□ 1.59
RPUSD3Q6P087 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.01■■□□□ 1.59
RPUSD3Q6P087 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RPUSD3Q6P087 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25■■□□□ 1.59
RPUSD3Q6P087 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25■■□□□ 1.59
RPUSD3Q6P087 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RPUSD3Q6P087 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.99■■□□□ 1.59
RPUSD3Q6P087 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RPUSD3Q6P087 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
RPUSD3Q6P087 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RPUSD3Q6P087 WASH5P-204ENST00000632292 975 ntBASIC24.98■■□□□ 1.59
RPUSD3Q6P087 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
RPUSD3Q6P087 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms