Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC32.44■■■□□ 2.78
ERCC3P19447 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.4■■■□□ 2.78
ERCC3P19447 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
ERCC3P19447 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
ERCC3P19447 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
ERCC3P19447 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.34■■■□□ 2.77
ERCC3P19447 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.33■■■□□ 2.77
ERCC3P19447 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
ERCC3P19447 AL133380.1-201ENST00000506013 324 ntBASIC32.31■■■□□ 2.76
ERCC3P19447 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
ERCC3P19447 AL391121.1-201ENST00000607967 1349 ntBASIC32.29■■■□□ 2.76
ERCC3P19447 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
ERCC3P19447 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
ERCC3P19447 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.27■■■□□ 2.76
ERCC3P19447 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.26■■■□□ 2.76
ERCC3P19447 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
ERCC3P19447 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
ERCC3P19447 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.22■■■□□ 2.75
ERCC3P19447 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.21■■■□□ 2.75
ERCC3P19447 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.2■■■□□ 2.75
ERCC3P19447 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.18■■■□□ 2.74
ERCC3P19447 AL162393.1-201ENST00000437852 946 ntBASIC32.18■■■□□ 2.74
ERCC3P19447 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
ERCC3P19447 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.17■■■□□ 2.74
ERCC3P19447 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.16■■■□□ 2.74
ERCC3P19447 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
ERCC3P19447 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.13■■■□□ 2.73
ERCC3P19447 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
ERCC3P19447 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
ERCC3P19447 AP006261.1-201ENST00000584783 668 ntBASIC32.11■■■□□ 2.73
ERCC3P19447 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.1■■■□□ 2.73
ERCC3P19447 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
ERCC3P19447 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
ERCC3P19447 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
ERCC3P19447 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.07■■■□□ 2.72
ERCC3P19447 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
ERCC3P19447 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.06■■■□□ 2.72
ERCC3P19447 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
ERCC3P19447 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.06■■■□□ 2.72
ERCC3P19447 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
ERCC3P19447 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.05■■■□□ 2.72
ERCC3P19447 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.05■■■□□ 2.72
ERCC3P19447 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
ERCC3P19447 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
ERCC3P19447 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.02■■■□□ 2.72
ERCC3P19447 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
ERCC3P19447 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
ERCC3P19447 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
ERCC3P19447 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32■■■□□ 2.71
ERCC3P19447 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32■■■□□ 2.71
ERCC3P19447 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
ERCC3P19447 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.97■■■□□ 2.71
ERCC3P19447 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
ERCC3P19447 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.97■■■□□ 2.71
ERCC3P19447 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
ERCC3P19447 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
ERCC3P19447 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
ERCC3P19447 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
ERCC3P19447 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.88■■■□□ 2.69
ERCC3P19447 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
ERCC3P19447 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.87■■■□□ 2.69
ERCC3P19447 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.86■■■□□ 2.69
ERCC3P19447 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
ERCC3P19447 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
ERCC3P19447 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.85■■■□□ 2.69
ERCC3P19447 MIR3665-201ENST00000578708 105 ntBASIC31.85■■■□□ 2.69
ERCC3P19447 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
ERCC3P19447 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
ERCC3P19447 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.83■■■□□ 2.69
ERCC3P19447 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
ERCC3P19447 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
ERCC3P19447 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
ERCC3P19447 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.78■■■□□ 2.68
ERCC3P19447 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
ERCC3P19447 DUX4L28-201ENST00000623687 678 ntBASIC31.77■■■□□ 2.68
ERCC3P19447 MIR762-201ENST00000390236 83 ntBASIC31.76■■■□□ 2.67
ERCC3P19447 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.76■■■□□ 2.67
ERCC3P19447 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.75■■■□□ 2.67
ERCC3P19447 AC087741.3-201ENST00000624270 1347 ntBASIC31.75■■■□□ 2.67
ERCC3P19447 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
ERCC3P19447 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
ERCC3P19447 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.71■■■□□ 2.67
ERCC3P19447 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.71■■■□□ 2.67
ERCC3P19447 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
ERCC3P19447 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
ERCC3P19447 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
ERCC3P19447 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
ERCC3P19447 AC005559.1-201ENST00000589661 871 ntBASIC31.66■■■□□ 2.66
ERCC3P19447 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
ERCC3P19447 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.65■■■□□ 2.66
ERCC3P19447 ABHD17AP4-201ENST00000411545 909 ntBASIC31.62■■■□□ 2.65
ERCC3P19447 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.62■■■□□ 2.65
ERCC3P19447 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
ERCC3P19447 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
ERCC3P19447 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.59■■■□□ 2.65
ERCC3P19447 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.58■■■□□ 2.65
ERCC3P19447 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.58■■■□□ 2.65
ERCC3P19447 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
ERCC3P19447 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.57■■■□□ 2.64
ERCC3P19447 AC044849.2-201ENST00000606596 710 ntBASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms