Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
TPM1P09493 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
TPM1P09493 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.56■■■□□ 2.48
TPM1P09493 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
TPM1P09493 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC30.51■■■□□ 2.48
TPM1P09493 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.47
TPM1P09493 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
TPM1P09493 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.48■■■□□ 2.47
TPM1P09493 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
TPM1P09493 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
TPM1P09493 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.47■■■□□ 2.47
TPM1P09493 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
TPM1P09493 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
TPM1P09493 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TPM1P09493 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
TPM1P09493 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC30.41■■■□□ 2.46
TPM1P09493 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.41■■■□□ 2.46
TPM1P09493 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TPM1P09493 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
TPM1P09493 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.35■■■□□ 2.45
TPM1P09493 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
TPM1P09493 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TPM1P09493 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TPM1P09493 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.33■■■□□ 2.45
TPM1P09493 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
TPM1P09493 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
TPM1P09493 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
TPM1P09493 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC30.31■■■□□ 2.44
TPM1P09493 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TPM1P09493 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TPM1P09493 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.27■■■□□ 2.44
TPM1P09493 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
TPM1P09493 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
TPM1P09493 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
TPM1P09493 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.26■■■□□ 2.43
TPM1P09493 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.24■■■□□ 2.43
TPM1P09493 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
TPM1P09493 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
TPM1P09493 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
TPM1P09493 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
TPM1P09493 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
TPM1P09493 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.16■■■□□ 2.42
TPM1P09493 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.16■■■□□ 2.42
TPM1P09493 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
TPM1P09493 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.11■■■□□ 2.41
TPM1P09493 AC120057.4-201ENST00000624722 1615 ntBASIC30.11■■■□□ 2.41
TPM1P09493 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.1■■■□□ 2.41
TPM1P09493 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.1■■■□□ 2.41
TPM1P09493 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
TPM1P09493 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.09■■■□□ 2.41
TPM1P09493 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
TPM1P09493 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
TPM1P09493 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.06■■■□□ 2.4
TPM1P09493 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.06■■■□□ 2.4
TPM1P09493 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
TPM1P09493 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
TPM1P09493 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
TPM1P09493 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30■■■□□ 2.39
TPM1P09493 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
TPM1P09493 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
TPM1P09493 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.96■■■□□ 2.39
TPM1P09493 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
TPM1P09493 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
TPM1P09493 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC29.94■■■□□ 2.38
TPM1P09493 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.94■■■□□ 2.38
TPM1P09493 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
TPM1P09493 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
TPM1P09493 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
TPM1P09493 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
TPM1P09493 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
TPM1P09493 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
TPM1P09493 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
TPM1P09493 AL161658.1-201ENST00000623641 1967 ntBASIC29.92■■■□□ 2.38
TPM1P09493 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC29.92■■■□□ 2.38
TPM1P09493 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
TPM1P09493 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
TPM1P09493 ABCB10P1-201ENST00000614297 2181 ntBASIC29.9■■■□□ 2.38
TPM1P09493 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.89■■■□□ 2.38
TPM1P09493 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
TPM1P09493 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
TPM1P09493 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.88■■■□□ 2.37
TPM1P09493 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
TPM1P09493 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
TPM1P09493 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
TPM1P09493 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
TPM1P09493 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.86■■■□□ 2.37
TPM1P09493 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
TPM1P09493 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.85■■■□□ 2.37
TPM1P09493 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
TPM1P09493 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
TPM1P09493 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.81■■■□□ 2.36
TPM1P09493 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.8■■■□□ 2.36
TPM1P09493 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
TPM1P09493 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
TPM1P09493 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
TPM1P09493 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.78■■■□□ 2.36
TPM1P09493 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.77■■■□□ 2.36
TPM1P09493 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
TPM1P09493 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
TPM1P09493 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 379.5 ms