Protein–RNA interactions for Protein: P05455

SSB, Lupus La protein, humanhuman

Known RBP eCLIP

Length 408 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP05455 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.286e-9■■■■□ 22.6
SSBP05455 SNORD8-201ENST00000363915 110 ntBASIC6.99□□□□□ -1.298e-7■■■■□ 22.6
SSBP05455 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.12e-7■■■■□ 22.6
SSBP05455 STRN4-205ENST00000593979 675 ntTSL 420.11■□□□□ 0.812e-7■■■■□ 22.6
SSBP05455 STRN4-215ENST00000597063 570 ntTSL 420.11■□□□□ 0.812e-7■■■■□ 22.6
SSBP05455 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.57■□□□□ 0.722e-7■■■■□ 22.6
SSBP05455 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.712e-7■■■■□ 22.6
SSBP05455 STRN4-203ENST00000435164 1551 ntTSL 216.04■□□□□ 0.162e-7■■■■□ 22.6
SSBP05455 STRN4-209ENST00000594704 913 ntTSL 515.65■□□□□ 0.12e-7■■■■□ 22.6
SSBP05455 STRN4-220ENST00000600710 565 ntTSL 515.38■□□□□ 0.052e-7■■■■□ 22.6
SSBP05455 STRN4-212ENST00000596012 560 ntTSL 414.74□□□□□ -0.052e-7■■■■□ 22.6
SSBP05455 PLEKHM1-202ENST00000446609 2825 ntTSL 517.41■□□□□ 0.385e-7■■■■□ 22.6
SSBP05455 PLEKHM1-204ENST00000579197 4995 ntTSL 214.8□□□□□ -0.045e-7■■■■□ 22.6
SSBP05455 PLEKHM1-207ENST00000581448 3292 ntTSL 1 (best)14.72□□□□□ -0.055e-7■■■■□ 22.6
SSBP05455 PLEKHM1-201ENST00000430334 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.095e-7■■■■□ 22.6
SSBP05455 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC8.71□□□□□ -1.029e-43■■■■□ 21.4
SSBP05455 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.011e-6■■■■□ 21.2
SSBP05455 SHF-211ENST00000561278 578 ntTSL 413.88□□□□□ -0.191e-6■■■■□ 21.2
SSBP05455 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC7.82□□□□□ -1.164e-6■■■■□ 21.1
SSBP05455 AL024507.2-201ENST00000606070 2574 ntBASIC23.45■■□□□ 1.345e-6■■■■□ 20.9
SSBP05455 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.364e-6■■■■□ 20.7
SSBP05455 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.08■□□□□ 0.174e-6■■■■□ 20.7
SSBP05455 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.03■□□□□ 0.164e-6■■■■□ 20.7
SSBP05455 MED15-211ENST00000433831 3267 ntTSL 515.93■□□□□ 0.144e-6■■■■□ 20.7
SSBP05455 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.054e-6■■■■□ 20.7
SSBP05455 MED15-226ENST00000478831 707 ntTSL 412.63□□□□□ -0.394e-6■■■■□ 20.7
SSBP05455 MED15-230ENST00000492381 3619 ntTSL 212.07□□□□□ -0.484e-6■■■■□ 20.7
SSBP05455 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.828e-11■■■■□ 20.6
SSBP05455 C19orf48-216ENST00000641834 1718 nt19.36■□□□□ 0.698e-11■■■■□ 20.6
SSBP05455 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.418e-11■■■■□ 20.6
SSBP05455 C19orf48-203ENST00000593287 578 ntTSL 515.35■□□□□ 0.058e-11■■■■□ 20.6
SSBP05455 C19orf48-210ENST00000598463 1844 ntTSL 1 (best)15.26■□□□□ 0.038e-11■■■■□ 20.6
SSBP05455 C19orf48-206ENST00000596554 727 ntTSL 314.51□□□□□ -0.098e-11■■■■□ 20.6
SSBP05455 C19orf48-209ENST00000597705 892 ntTSL 313.95□□□□□ -0.188e-11■■■■□ 20.6
SSBP05455 C19orf48-213ENST00000601267 782 ntTSL 213.79□□□□□ -0.28e-11■■■■□ 20.6
SSBP05455 C19orf48-208ENST00000597493 971 ntTSL 213.62□□□□□ -0.238e-11■■■■□ 20.6
SSBP05455 C19orf48-211ENST00000599004 866 ntTSL 513.45□□□□□ -0.268e-11■■■■□ 20.6
SSBP05455 C19orf48-204ENST00000595794 941 ntTSL 1 (best)12.25□□□□□ -0.458e-11■■■■□ 20.6
SSBP05455 SNORD88C-201ENST00000408061 91 ntBASIC11.47□□□□□ -0.578e-11■■■■□ 20.6
SSBP05455 C19orf48-214ENST00000602125 292 ntTSL 55.47□□□□□ -1.538e-11■■■■□ 20.6
SSBP05455 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.56■□□□□ 0.242e-8■■■■□ 20.3
SSBP05455 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.33■□□□□ 0.21e-6■■■■□ 20.3
SSBP05455 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.142e-8■■■■□ 20.3
SSBP05455 RPL23A-205ENST00000472628 639 ntTSL 1 (best) BASIC12.33□□□□□ -0.442e-10■■■■□ 20.3
SSBP05455 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC11.67□□□□□ -0.541e-6■■■■□ 20.3
SSBP05455 RPL23A-202ENST00000394935 580 ntTSL 310.82□□□□□ -0.682e-8■■■■□ 20.3
SSBP05455 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC8.52□□□□□ -1.052e-8■■■■□ 20.3
SSBP05455 RPL23A-201ENST00000355731 587 ntTSL 57.7□□□□□ -1.182e-8■■■■□ 20.3
SSBP05455 RPL23A-207ENST00000578181 593 ntTSL 24.48□□□□□ -1.692e-10■■■■□ 20.3
SSBP05455 SNORD4A-201ENST00000459174 72 ntBASIC-0.27□□□□□ -2.452e-10■■■■□ 20.3
SSBP05455 SMIM1-202ENST00000452264 447 ntTSL 218.04■□□□□ 0.482e-7■■■■□ 20.1
SSBP05455 EIF4G2-215ENST00000530564 849 ntTSL 29.11□□□□□ -0.954e-15■■■■□ 20
SSBP05455 CTNNA1-206ENST00000517980 696 ntTSL 419.28■□□□□ 0.689e-7■■■■□ 20
SSBP05455 CTNNA1-234ENST00000522227 642 ntTSL 312.71□□□□□ -0.379e-7■■■■□ 20
SSBP05455 CTNNA1-241ENST00000524127 483 ntTSL 45.35□□□□□ -1.559e-7■■■■□ 20
SSBP05455 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.58□□□□□ -1.527e-6■■■■□ 19.9
SSBP05455 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.162e-6■■■■□ 19.4
SSBP05455 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.852e-6■■■■□ 19.4
SSBP05455 MAP2K3-206ENST00000479129 574 ntTSL 319.74■□□□□ 0.752e-6■■■■□ 19.4
SSBP05455 MAP2K3-207ENST00000483928 511 ntTSL 519.62■□□□□ 0.732e-6■■■■□ 19.4
SSBP05455 MAP2K3-213ENST00000583508 607 ntTSL 519.62■□□□□ 0.732e-6■■■■□ 19.4
SSBP05455 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.382e-6■■■■□ 19.4
SSBP05455 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.99■□□□□ 0.152e-6■■■■□ 19.4
SSBP05455 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.62■□□□□ 0.092e-6■■■■□ 19.4
SSBP05455 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC15.09■□□□□ 0.012e-6■■■■□ 19.4
SSBP05455 MAP2K3-208ENST00000496046 2089 ntTSL 514.06□□□□□ -0.162e-6■■■■□ 19.4
SSBP05455 MAP2K3-204ENST00000395491 2401 ntTSL 213.95□□□□□ -0.182e-6■■■■□ 19.4
SSBP05455 MAP2K3-209ENST00000526076 575 ntTSL 410.89□□□□□ -0.672e-6■■■■□ 19.4
SSBP05455 EIF4G2-218ENST00000531416 1969 ntTSL 217.55■□□□□ 0.47e-15■■■■□ 19.4
SSBP05455 EIF4G2-225ENST00000532383 6769 ntTSL 1 (best)11.25□□□□□ -0.617e-15■■■■□ 19.4
SSBP05455 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.667e-15■■■■□ 19.4
SSBP05455 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.727e-15■■■■□ 19.4
SSBP05455 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.927e-15■■■■□ 19.4
SSBP05455 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.977e-15■■■■□ 19.4
SSBP05455 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.077e-15■■■■□ 19.4
SSBP05455 SNORD97-201ENST00000459187 142 ntBASIC5.16□□□□□ -1.587e-15■■■■□ 19.4
SSBP05455 EIF4G2-222ENST00000532120 223 ntTSL 33.73□□□□□ -1.817e-15■■■■□ 19.4
SSBP05455 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC7.92□□□□□ -1.141e-7■■■□□ 19.2
SSBP05455 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.641e-6■■■□□ 19
SSBP05455 GAS5-216ENST00000443799 897 ntTSL 510.44□□□□□ -0.745e-7■■■□□ 18.5
SSBP05455 GAS5-203ENST00000416952 799 ntTSL 29.84□□□□□ -0.835e-7■■■□□ 18.5
SSBP05455 GAS5-226ENST00000455838 632 ntTSL 29.04□□□□□ -0.965e-7■■■□□ 18.5
SSBP05455 GAS5-211ENST00000432536 959 ntTSL 2 BASIC8.06□□□□□ -1.125e-7■■■□□ 18.5
SSBP05455 GAS5-227ENST00000456293 583 ntTSL 37.98□□□□□ -1.135e-7■■■□□ 18.5
SSBP05455 GAS5-204ENST00000421068 1060 ntTSL 26.2□□□□□ -1.425e-7■■■□□ 18.5
SSBP05455 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.93□□□□□ -1.625e-7■■■□□ 18.5
SSBP05455 GAS5-229ENST00000458220 469 ntTSL 24.55□□□□□ -1.685e-7■■■□□ 18.5
SSBP05455 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.061e-7■■■□□ 18.4
SSBP05455 FMC1-205ENST00000488886 432 ntTSL 316.66■□□□□ 0.262e-13■■■□□ 18.1
SSBP05455 FMC1-203ENST00000481123 460 ntTSL 216.52■□□□□ 0.242e-13■■■□□ 18.1
SSBP05455 FMC1-202ENST00000468383 345 ntTSL 316.25■□□□□ 0.192e-13■■■□□ 18.1
SSBP05455 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.28■□□□□ 0.042e-13■■■□□ 18.1
SSBP05455 FMC1-204ENST00000482181 386 ntTSL 214.52□□□□□ -0.092e-13■■■□□ 18.1
SSBP05455 MIR3648-1-201ENST00000615959 180 ntBASIC28.37■■■□□ 2.131e-5■■■□□ 18.1
SSBP05455 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC11.76□□□□□ -0.537e-6■■■□□ 18.1
SSBP05455 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.177e-6■■■□□ 18.1
SSBP05455 AC093249.2-201ENST00000563540 482 ntTSL 3 BASIC12.18□□□□□ -0.466e-6■■■□□ 18.1
SSBP05455 AL136295.1-201ENST00000530611 2740 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.439e-6■■■□□ 17.6
SSBP05455 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.699e-10■■■□□ 17.5
SSBP05455 NCAPD2-207ENST00000539084 4290 ntTSL 212.62□□□□□ -0.399e-10■■■□□ 17.5
Retrieved 100 of 672 protein–RNA pairs in 137.2 ms