RNA–Protein interactions for RNA: ENST00000561278.1

SHF-211, Transcript of Src homology 2 domain containing F, humanhuman

TSL 4

Gene SHF, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHF-211ENST00000561278 NISCHQ9Y2I1 1504 aa30.96■■■□□ 2.55
SHF-211ENST00000561278 CCDC180Q9P1Z9 1646 aa27.72■■■□□ 2.03
SHF-211ENST00000561278 ABCC9O60706 1549 aa27.57■■■□□ 2
SHF-211ENST00000561278 RB1CC1Q8TDY2 1594 aa26.31■■□□□ 1.8
SHF-211ENST00000561278 NACADO15069 1562 aa26.14■■□□□ 1.78
SHF-211ENST00000561278 DCAF8L2P0C7V8 631 aa26.13■■□□□ 1.77
SHF-211ENST00000561278 MYO15BQ96JP2 1530 aa25.8■■□□□ 1.72
SHF-211ENST00000561278 ZCCHC6Q5VYS8 1495 aaKnown RBP25.72■■□□□ 1.71
SHF-211ENST00000561278 UNC13AQ9UPW8 1703 aa25.68■■□□□ 1.7
SHF-211ENST00000561278 PABPN1Q86U42 306 aaKnown RBP eCLIP25.67■■□□□ 1.7
SHF-211ENST00000561278 DNAJC5BQ9UF47 199 aa25.57■■□□□ 1.68
SHF-211ENST00000561278 DCAF1Q9Y4B6 1507 aa25.55■■□□□ 1.68
SHF-211ENST00000561278 BICRAQ9NZM4 1560 aa25.48■■□□□ 1.67
SHF-211ENST00000561278 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
SHF-211ENST00000561278 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
SHF-211ENST00000561278 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
SHF-211ENST00000561278 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
SHF-211ENST00000561278 EIF4G1Q04637 1599 aaKnown RBP24.88■■□□□ 1.57
SHF-211ENST00000561278 CECR2Q9BXF3 1484 aa24.79■■□□□ 1.56
SHF-211ENST00000561278 SMARCA4P51532 1647 aa24.14■■□□□ 1.46
SHF-211ENST00000561278 NCAPD3P42695 1498 aa24.1■■□□□ 1.45
SHF-211ENST00000561278 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.45
SHF-211ENST00000561278 SMARCA2P51531 1590 aa24.06■■□□□ 1.44
SHF-211ENST00000561278 BAZ1AQ9NRL2 1556 aaPredicted RBP24.05■■□□□ 1.44
SHF-211ENST00000561278 HMGXB3Q12766 1538 aa23.99■■□□□ 1.43
SHF-211ENST00000561278 BAZ1BQ9UIG0 1483 aaKnown RBP23.92■■□□□ 1.42
SHF-211ENST00000561278 MROH2BQ7Z745 1585 aa23.87■■□□□ 1.41
SHF-211ENST00000561278 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
SHF-211ENST00000561278 ERCC6Q03468 1493 aa23.82■■□□□ 1.4
SHF-211ENST00000561278 CHIC1Q5VXU3 224 aa23.72■■□□□ 1.39
SHF-211ENST00000561278 NESP48681 1621 aa23.72■■□□□ 1.39
SHF-211ENST00000561278 CUX2O14529 1486 aa23.65■■□□□ 1.38
SHF-211ENST00000561278 WIZO95785 1651 aa23.62■■□□□ 1.37
SHF-211ENST00000561278 LAMC3Q9Y6N6 1575 aa23.57■■□□□ 1.36
SHF-211ENST00000561278 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
SHF-211ENST00000561278 RSF1Q96T23 1441 aaPredicted RBP23.43■■□□□ 1.34
SHF-211ENST00000561278 PDS5BQ9NTI5 1447 aa23.43■■□□□ 1.34
SHF-211ENST00000561278 KIF21AQ7Z4S6 1674 aa23.43■■□□□ 1.34
SHF-211ENST00000561278 CADPSQ9ULU8 1353 aa23.4■■□□□ 1.34
SHF-211ENST00000561278 DNAJC5Q9H3Z4 198 aa23.34■■□□□ 1.33
SHF-211ENST00000561278 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.33
SHF-211ENST00000561278 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
SHF-211ENST00000561278 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
SHF-211ENST00000561278 CFTRP13569 1480 aa23.17■■□□□ 1.3
SHF-211ENST00000561278 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
SHF-211ENST00000561278 WDR62O43379 1518 aa23.16■■□□□ 1.3
SHF-211ENST00000561278 CCDC88BA6NC98 1476 aa23.04■■□□□ 1.28
SHF-211ENST00000561278 PRDM2Q13029 1718 aa22.99■■□□□ 1.27
SHF-211ENST00000561278 URB2Q14146 1524 aaKnown RBP22.95■■□□□ 1.26
SHF-211ENST00000561278 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
SHF-211ENST00000561278 IFT140Q96RY7 1462 aa22.7■■□□□ 1.22
SHF-211ENST00000561278 ABCC8Q09428 1581 aa22.69■■□□□ 1.22
SHF-211ENST00000561278 DNMBPQ6XZF7 1577 aa22.69■■□□□ 1.22
SHF-211ENST00000561278 ZNF608Q9ULD9 1512 aaPredicted RBP22.64■■□□□ 1.21
SHF-211ENST00000561278 SUPT5HO00267 1087 aaKnown RBP22.62■■□□□ 1.21
SHF-211ENST00000561278 OSCARQ8IYS5 282 aa22.58■■□□□ 1.21
SHF-211ENST00000561278 EIF4G3O43432 1585 aaKnown RBP22.57■■□□□ 1.2
SHF-211ENST00000561278 POLA1P09884 1462 aaPredicted RBP22.53■■□□□ 1.2
SHF-211ENST00000561278 TRIM41Q8WV44 630 aa22.52■■□□□ 1.2
SHF-211ENST00000561278 TARBP1Q13395 1621 aaKnown RBP22.51■■□□□ 1.19
SHF-211ENST00000561278 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.19
SHF-211ENST00000561278 RAD54L2Q9Y4B4 1467 aa22.45■■□□□ 1.18
SHF-211ENST00000561278 FGD5Q6ZNL6 1462 aa22.43■■□□□ 1.18
SHF-211ENST00000561278 CUX1P39880 1505 aa22.42■■□□□ 1.18
SHF-211ENST00000561278 SOGA1O94964 1423 aa22.42■■□□□ 1.18
SHF-211ENST00000561278 TDRD9Q8NDG6 1382 aaKnown RBP22.36■■□□□ 1.17
SHF-211ENST00000561278 CHD1O14646 1710 aa22.35■■□□□ 1.17
SHF-211ENST00000561278 FBLN2P98095 1184 aa22.33■■□□□ 1.17
SHF-211ENST00000561278 WDR97A6NE52 1622 aa22.31■■□□□ 1.16
SHF-211ENST00000561278 RIMBP3CA6NJZ7 1639 aa22.3■■□□□ 1.16
SHF-211ENST00000561278 RIMBP3BA6NNM3 1639 aa22.3■■□□□ 1.16
SHF-211ENST00000561278 RIMBP3Q9UFD9 1639 aa22.3■■□□□ 1.16
SHF-211ENST00000561278 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
SHF-211ENST00000561278 ARHGEF11O15085 1522 aa22.26■■□□□ 1.15
SHF-211ENST00000561278 GRIN2BQ13224 1484 aa22.22■■□□□ 1.15
SHF-211ENST00000561278 MAGI1Q96QZ7 1491 aaPredicted RBP22.2■■□□□ 1.14
SHF-211ENST00000561278 PBRM1Q86U86 1689 aa22.17■■□□□ 1.14
SHF-211ENST00000561278 GAPVD1Q14C86 1478 aa22.17■■□□□ 1.14
SHF-211ENST00000561278 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
SHF-211ENST00000561278 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
SHF-211ENST00000561278 WRNQ14191 1432 aaPredicted RBP eCLIP22.14■■□□□ 1.14
SHF-211ENST00000561278 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
SHF-211ENST00000561278 ABCA5Q8WWZ7 1642 aa22.13■■□□□ 1.13
SHF-211ENST00000561278 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
SHF-211ENST00000561278 SYNJ2O15056 1496 aa22.12■■□□□ 1.13
SHF-211ENST00000561278 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
SHF-211ENST00000561278 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
SHF-211ENST00000561278 CYB5RLQ6IPT4 315 aa22.06■■□□□ 1.12
SHF-211ENST00000561278 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
SHF-211ENST00000561278 ADAMTS12P58397 1594 aa21.97■■□□□ 1.11
SHF-211ENST00000561278 GRIN2AQ12879 1464 aa21.94■■□□□ 1.1
SHF-211ENST00000561278 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
SHF-211ENST00000561278 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.09
SHF-211ENST00000561278 CEP170Q5SW79 1584 aa21.85■■□□□ 1.09
SHF-211ENST00000561278 NUP160Q12769 1436 aa21.82■■□□□ 1.08
SHF-211ENST00000561278 TRHP20396 242 aaPredicted RBP21.81■■□□□ 1.08
SHF-211ENST00000561278 ERCC6L2Q5T890 1561 aa21.75■■□□□ 1.07
SHF-211ENST00000561278 SHROOM2Q13796 1616 aa21.71■■□□□ 1.07
SHF-211ENST00000561278 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
SHF-211ENST00000561278 SENP3Q9H4L4 574 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms