RNA–Protein interactions for RNA: ENST00000459249.1

RNU6ATAC28P-201, Transcript of RNA, U6atac small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU6ATAC28P, Length 118 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6ATAC28P-201ENST00000459249 CHIC1Q5VXU3 224 aa12.51□□□□□ -0.41
RNU6ATAC28P-201ENST00000459249 AEBP2Q6ZN18 517 aaPredicted RBP12.01□□□□□ -0.49
RNU6ATAC28P-201ENST00000459249 NISCHQ9Y2I1 1504 aa11.24□□□□□ -0.61
RNU6ATAC28P-201ENST00000459249 PHF23Q9BUL5 403 aaPredicted RBP11.06□□□□□ -0.64
RNU6ATAC28P-201ENST00000459249 PLPPR3Q6T4P5 718 aa10.5□□□□□ -0.73
RNU6ATAC28P-201ENST00000459249 SENP3Q9H4L4 574 aaPredicted RBP10.13□□□□□ -0.79
RNU6ATAC28P-201ENST00000459249 EHMT2Q96KQ7 1210 aa10.06□□□□□ -0.8
RNU6ATAC28P-201ENST00000459249 CCDC180Q9P1Z9 1646 aa10□□□□□ -0.81
RNU6ATAC28P-201ENST00000459249 KCNA4P22459 653 aa9.91□□□□□ -0.82
RNU6ATAC28P-201ENST00000459249 CSRNP3Q8WYN3 585 aa9.72□□□□□ -0.85
RNU6ATAC28P-201ENST00000459249 ADRA2BP18089 450 aa9.71□□□□□ -0.86
RNU6ATAC28P-201ENST00000459249 ABCC9O60706 1549 aa9.71□□□□□ -0.86
RNU6ATAC28P-201ENST00000459249 SLC4A1APQ9BWU0 796 aaKnown RBP9.58□□□□□ -0.88
RNU6ATAC28P-201ENST00000459249 SLC24A1O60721 1099 aa9.57□□□□□ -0.88
RNU6ATAC28P-201ENST00000459249 PPP6R1Q9UPN7 881 aa9.49□□□□□ -0.89
RNU6ATAC28P-201ENST00000459249 NACADO15069 1562 aa9.41□□□□□ -0.9
RNU6ATAC28P-201ENST00000459249 RB1CC1Q8TDY2 1594 aa9.4□□□□□ -0.9
RNU6ATAC28P-201ENST00000459249 MYO15BQ96JP2 1530 aa9.4□□□□□ -0.91
RNU6ATAC28P-201ENST00000459249 ZCCHC6Q5VYS8 1495 aaKnown RBP9.38□□□□□ -0.91
RNU6ATAC28P-201ENST00000459249 DCAF1Q9Y4B6 1507 aa9.35□□□□□ -0.91
RNU6ATAC28P-201ENST00000459249 NCBP3Q53F19 620 aaKnown RBP9.33□□□□□ -0.92
RNU6ATAC28P-201ENST00000459249 PPP4R3CPQ6ZMV5 832 aa9.32□□□□□ -0.92
RNU6ATAC28P-201ENST00000459249 AMER1Q5JTC6 1135 aaPredicted RBP9.3□□□□□ -0.92
RNU6ATAC28P-201ENST00000459249 FOXD1Q16676 465 aa9.27□□□□□ -0.93
RNU6ATAC28P-201ENST00000459249 DCAF8L2P0C7V8 631 aa9.25□□□□□ -0.93
RNU6ATAC28P-201ENST00000459249 RTN4Q9NQC3 1192 aaKnown RBP9.23□□□□□ -0.93
RNU6ATAC28P-201ENST00000459249 NPM3O75607 178 aaKnown RBP9.15□□□□□ -0.94
RNU6ATAC28P-201ENST00000459249 ZBTB22O15209 634 aa9.13□□□□□ -0.95
RNU6ATAC28P-201ENST00000459249 UNC13AQ9UPW8 1703 aa9.13□□□□□ -0.95
RNU6ATAC28P-201ENST00000459249 BICRAQ9NZM4 1560 aa9.11□□□□□ -0.95
RNU6ATAC28P-201ENST00000459249 SHROOM4Q9ULL8 1493 aa9.09□□□□□ -0.95
RNU6ATAC28P-201ENST00000459249 SCRIBQ14160 1630 aa9.05□□□□□ -0.96
RNU6ATAC28P-201ENST00000459249 PABPN1Q86U42 306 aaKnown RBP eCLIP9.04□□□□□ -0.96
RNU6ATAC28P-201ENST00000459249 DNAJC5BQ9UF47 199 aa8.97□□□□□ -0.97
RNU6ATAC28P-201ENST00000459249 FOXD4L1Q9NU39 408 aa8.94□□□□□ -0.98
RNU6ATAC28P-201ENST00000459249 CNKSR2Q8WXI2 1034 aa8.93□□□□□ -0.98
RNU6ATAC28P-201ENST00000459249 PIAS4Q8N2W9 510 aaPredicted RBP8.88□□□□□ -0.99
RNU6ATAC28P-201ENST00000459249 EIF4G1Q04637 1599 aaKnown RBP8.86□□□□□ -0.99
RNU6ATAC28P-201ENST00000459249 CC2D2AQ9P2K1 1620 aa8.8□□□□□ -1
RNU6ATAC28P-201ENST00000459249 SCAF1Q9H7N4 1312 aaKnown RBP8.8□□□□□ -1
RNU6ATAC28P-201ENST00000459249 CECR2Q9BXF3 1484 aa8.75□□□□□ -1.01
RNU6ATAC28P-201ENST00000459249 BAZ1AQ9NRL2 1556 aaPredicted RBP8.71□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 SMARCA4P51532 1647 aa8.71□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 FKBP8Q14318 412 aa8.68□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 NCAPD3P42695 1498 aa8.68□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 ATXN8OSP0DMR3 200 aa8.67□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 SMARCA2P51531 1590 aa8.67□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 ATAD2BQ9ULI0 1458 aa8.67□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 PEG3Q9GZU2 1588 aa8.66□□□□□ -1.02
RNU6ATAC28P-201ENST00000459249 HMGXB3Q12766 1538 aa8.64□□□□□ -1.03
RNU6ATAC28P-201ENST00000459249 MROH2BQ7Z745 1585 aa8.63□□□□□ -1.03
RNU6ATAC28P-201ENST00000459249 RNF216Q9NWF9 866 aaPredicted RBP8.59□□□□□ -1.03
RNU6ATAC28P-201ENST00000459249 BAZ1BQ9UIG0 1483 aaKnown RBP8.58□□□□□ -1.04
RNU6ATAC28P-201ENST00000459249 RSF1Q96T23 1441 aaPredicted RBP8.55□□□□□ -1.04
RNU6ATAC28P-201ENST00000459249 PLCB2Q00722 1185 aa8.52□□□□□ -1.05
RNU6ATAC28P-201ENST00000459249 WIZO95785 1651 aa8.51□□□□□ -1.05
RNU6ATAC28P-201ENST00000459249 TOP2AP11388 1531 aaKnown RBP8.48□□□□□ -1.05
RNU6ATAC28P-201ENST00000459249 MYCNP04198 464 aaPredicted RBP8.46□□□□□ -1.06
RNU6ATAC28P-201ENST00000459249 SLC4A2P04920 1241 aa8.46□□□□□ -1.06
RNU6ATAC28P-201ENST00000459249 BCANQ96GW7 911 aa8.46□□□□□ -1.06
RNU6ATAC28P-201ENST00000459249 LAMC3Q9Y6N6 1575 aa8.44□□□□□ -1.06
RNU6ATAC28P-201ENST00000459249 CADPSQ9ULU8 1353 aa8.41□□□□□ -1.06
RNU6ATAC28P-201ENST00000459249 NESP48681 1621 aa8.4□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 MAPK8IP2Q13387 824 aaPredicted RBP8.39□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 CFTRP13569 1480 aa8.38□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 ERCC6Q03468 1493 aa8.38□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 PDS5BQ9NTI5 1447 aa8.37□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 HOXD11P31277 338 aaPredicted RBP8.37□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 TAOK2Q9UL54 1235 aa8.37□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 CCDC88BA6NC98 1476 aa8.35□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 VSIG10Q8N0Z9 540 aa8.35□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 CUX2O14529 1486 aa8.34□□□□□ -1.07
RNU6ATAC28P-201ENST00000459249 PRKCSHP14314 528 aaPredicted RBP8.33□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 THOC2Q8NI27 1593 aaKnown RBP8.31□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 HAP1P54257 671 aaPredicted RBP8.31□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 KIF21AQ7Z4S6 1674 aa8.3□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 MSH5O43196 834 aa8.3□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 FANCD2Q9BXW9 1451 aa8.3□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 MRC2Q9UBG0 1479 aa8.29□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 CEP164Q9UPV0 1460 aa8.29□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 PRDM2Q13029 1718 aa8.29□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 FBXO3Q9UK99 471 aa8.28□□□□□ -1.08
RNU6ATAC28P-201ENST00000459249 WDR62O43379 1518 aa8.27□□□□□ -1.09
RNU6ATAC28P-201ENST00000459249 SUPT5HO00267 1087 aaKnown RBP8.24□□□□□ -1.09
RNU6ATAC28P-201ENST00000459249 DMRT2Q9Y5R5 561 aa8.22□□□□□ -1.09
RNU6ATAC28P-201ENST00000459249 URB2Q14146 1524 aaKnown RBP8.21□□□□□ -1.1
RNU6ATAC28P-201ENST00000459249 ABCC8Q09428 1581 aa8.2□□□□□ -1.1
RNU6ATAC28P-201ENST00000459249 DNMBPQ6XZF7 1577 aa8.18□□□□□ -1.1
RNU6ATAC28P-201ENST00000459249 TOPBP1Q92547 1522 aa8.17□□□□□ -1.1
RNU6ATAC28P-201ENST00000459249 TPRNQ4KMQ1 711 aa8.16□□□□□ -1.1
RNU6ATAC28P-201ENST00000459249 IFT140Q96RY7 1462 aa8.13□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 ATF5Q9Y2D1 282 aaPredicted RBP8.12□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 CUX1P39880 1505 aa8.11□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 POLA1P09884 1462 aaPredicted RBP8.1□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.09□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 HNRNPUL2Q1KMD3 747 aaKnown RBP8.09□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 KDM2AQ9Y2K7 1162 aa8.09□□□□□ -1.11
RNU6ATAC28P-201ENST00000459249 TARBP1Q13395 1621 aaKnown RBP8.08□□□□□ -1.12
RNU6ATAC28P-201ENST00000459249 VASPP50552 380 aaPredicted RBP8.08□□□□□ -1.12
RNU6ATAC28P-201ENST00000459249 PROM2Q8N271 834 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms