RNA–Protein interactions for RNA: ENST00000409681.1

POLR1A-203, Transcript of RNA polymerase I subunit A, humanhuman

TSL 5 BASIC

Gene POLR1A, Length 6,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1A-203ENST00000409681 NISCHQ9Y2I1 1504 aa19.14■□□□□ 0.66
POLR1A-203ENST00000409681 DCAF8L2P0C7V8 631 aa18.57■□□□□ 0.56
POLR1A-203ENST00000409681 SHROOM4Q9ULL8 1493 aa17.15■□□□□ 0.34
POLR1A-203ENST00000409681 SUPT5HO00267 1087 aaKnown RBP17.08■□□□□ 0.32
POLR1A-203ENST00000409681 ABCC9O60706 1549 aa16.66■□□□□ 0.26
POLR1A-203ENST00000409681 FAM9AQ8IZU1 332 aaPredicted RBP16.44■□□□□ 0.22
POLR1A-203ENST00000409681 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
POLR1A-203ENST00000409681 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
POLR1A-203ENST00000409681 APLP2Q06481 763 aa16.14■□□□□ 0.17
POLR1A-203ENST00000409681 EHMT2Q96KQ7 1210 aa16.1■□□□□ 0.17
POLR1A-203ENST00000409681 TRIM41Q8WV44 630 aa16.05■□□□□ 0.16
POLR1A-203ENST00000409681 RB1CC1Q8TDY2 1594 aa15.85■□□□□ 0.13
POLR1A-203ENST00000409681 ZCCHC6Q5VYS8 1495 aaKnown RBP15.84■□□□□ 0.13
POLR1A-203ENST00000409681 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
POLR1A-203ENST00000409681 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
POLR1A-203ENST00000409681 SCRIBQ14160 1630 aa15.74■□□□□ 0.11
POLR1A-203ENST00000409681 ATP1B4Q9UN42 357 aaPredicted RBP15.73■□□□□ 0.11
POLR1A-203ENST00000409681 NACADO15069 1562 aa15.72■□□□□ 0.11
POLR1A-203ENST00000409681 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.45■□□□□ 0.06
POLR1A-203ENST00000409681 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
POLR1A-203ENST00000409681 TTBK1Q5TCY1 1321 aaPredicted RBP15.45■□□□□ 0.06
POLR1A-203ENST00000409681 DCAF1Q9Y4B6 1507 aa15.42■□□□□ 0.06
POLR1A-203ENST00000409681 FBLN2P98095 1184 aa15.33■□□□□ 0.04
POLR1A-203ENST00000409681 MYT1LQ9UL68 1186 aa15.32■□□□□ 0.04
POLR1A-203ENST00000409681 CHIC1Q5VXU3 224 aa15.31■□□□□ 0.04
POLR1A-203ENST00000409681 MYO15BQ96JP2 1530 aa15.2■□□□□ 0.02
POLR1A-203ENST00000409681 BAZ1BQ9UIG0 1483 aaKnown RBP15.16■□□□□ 0.02
POLR1A-203ENST00000409681 BAZ1AQ9NRL2 1556 aaPredicted RBP15.1■□□□□ 0.01
POLR1A-203ENST00000409681 PCGF6Q9BYE7 350 aa15.1■□□□□ 0.01
POLR1A-203ENST00000409681 ERCC6Q03468 1493 aa15.03■□□□□ -0
POLR1A-203ENST00000409681 CCER1Q8TC90 406 aaPredicted RBP15.03■□□□□ -0
POLR1A-203ENST00000409681 CSRNP3Q8WYN3 585 aa15.03■□□□□ -0
POLR1A-203ENST00000409681 RSF1Q96T23 1441 aaPredicted RBP15.02■□□□□ -0
POLR1A-203ENST00000409681 LOC105371045A0A1W2PR82 267 aa14.99□□□□□ -0.01
POLR1A-203ENST00000409681 NPM1P06748 294 aaKnown RBP eCLIP14.99□□□□□ -0.01
POLR1A-203ENST00000409681 ZEB1P37275 1124 aaPredicted RBP14.99□□□□□ -0.01
POLR1A-203ENST00000409681 ITGAEP38570 1179 aa14.96□□□□□ -0.01
POLR1A-203ENST00000409681 CHMP7Q8WUX9 453 aaPredicted RBP14.95□□□□□ -0.02
POLR1A-203ENST00000409681 CDK11AQ9UQ88 783 aaPredicted RBP14.95□□□□□ -0.02
POLR1A-203ENST00000409681 PPARGC1BQ86YN6 1023 aaKnown RBP14.94□□□□□ -0.02
POLR1A-203ENST00000409681 SMARCA2P51531 1590 aa14.93□□□□□ -0.02
POLR1A-203ENST00000409681 CECR2Q9BXF3 1484 aa14.87□□□□□ -0.03
POLR1A-203ENST00000409681 TRIM26Q12899 539 aaPredicted RBP14.86□□□□□ -0.03
POLR1A-203ENST00000409681 FAM50AQ14320 339 aaKnown RBP14.84□□□□□ -0.03
POLR1A-203ENST00000409681 P3H3Q8IVL6 736 aa14.84□□□□□ -0.03
POLR1A-203ENST00000409681 PDS5BQ9NTI5 1447 aa14.83□□□□□ -0.04
POLR1A-203ENST00000409681 WRNQ14191 1432 aaPredicted RBP eCLIP14.77□□□□□ -0.05
POLR1A-203ENST00000409681 ARID3CA6NKF2 412 aa14.73□□□□□ -0.05
POLR1A-203ENST00000409681 EEA1Q15075 1411 aa14.71□□□□□ -0.05
POLR1A-203ENST00000409681 TRIM52Q96A61 297 aa14.71□□□□□ -0.06
POLR1A-203ENST00000409681 KIF27Q86VH2 1401 aa14.7□□□□□ -0.06
POLR1A-203ENST00000409681 MROH2BQ7Z745 1585 aa14.7□□□□□ -0.06
POLR1A-203ENST00000409681 ESF1Q9H501 851 aaKnown RBP14.69□□□□□ -0.06
POLR1A-203ENST00000409681 ZNF777Q9ULD5 760 aaPredicted RBP14.65□□□□□ -0.06
POLR1A-203ENST00000409681 ATAD2BQ9ULI0 1458 aa14.65□□□□□ -0.07
POLR1A-203ENST00000409681 PELP1Q8IZL8 1130 aaKnown RBP14.63□□□□□ -0.07
POLR1A-203ENST00000409681 CADPSQ9ULU8 1353 aa14.63□□□□□ -0.07
POLR1A-203ENST00000409681 TOP2AP11388 1531 aaKnown RBP14.59□□□□□ -0.07
POLR1A-203ENST00000409681 CCDC88BA6NC98 1476 aa14.58□□□□□ -0.08
POLR1A-203ENST00000409681 SMARCA4P51532 1647 aa14.58□□□□□ -0.08
POLR1A-203ENST00000409681 PLEKHD1A6NEE1 506 aa14.53□□□□□ -0.08
POLR1A-203ENST00000409681 POLR3GLQ9BT43 218 aa14.52□□□□□ -0.08
POLR1A-203ENST00000409681 CEP164Q9UPV0 1460 aa14.51□□□□□ -0.09
POLR1A-203ENST00000409681 GOLGA3Q08378 1498 aa14.51□□□□□ -0.09
POLR1A-203ENST00000409681 CUX2O14529 1486 aa14.5□□□□□ -0.09
POLR1A-203ENST00000409681 MTUS2Q5JR59 1369 aa14.49□□□□□ -0.09
POLR1A-203ENST00000409681 SOGA1O94964 1423 aa14.49□□□□□ -0.09
POLR1A-203ENST00000409681 EIF4G1Q04637 1599 aaKnown RBP14.49□□□□□ -0.09
POLR1A-203ENST00000409681 BCANQ96GW7 911 aa14.48□□□□□ -0.09
POLR1A-203ENST00000409681 TSPY4P0CV99 314 aa14.47□□□□□ -0.09
POLR1A-203ENST00000409681 TSPY10P0CW01 314 aa14.47□□□□□ -0.09
POLR1A-203ENST00000409681 NCAPD3P42695 1498 aa14.47□□□□□ -0.09
POLR1A-203ENST00000409681 CLIP1P30622 1438 aa14.47□□□□□ -0.09
POLR1A-203ENST00000409681 ABCC8Q09428 1581 aa14.47□□□□□ -0.09
POLR1A-203ENST00000409681 SLC4A1APQ9BWU0 796 aaKnown RBP14.46□□□□□ -0.09
POLR1A-203ENST00000409681 WIZO95785 1651 aa14.45□□□□□ -0.1
POLR1A-203ENST00000409681 CARMIL1Q5VZK9 1371 aa14.45□□□□□ -0.1
POLR1A-203ENST00000409681 KCNH8Q96L42 1107 aa14.44□□□□□ -0.1
POLR1A-203ENST00000409681 STAG3Q9UJ98 1225 aa14.42□□□□□ -0.1
POLR1A-203ENST00000409681 FANCD2Q9BXW9 1451 aa14.41□□□□□ -0.1
POLR1A-203ENST00000409681 CARMIL2Q6F5E8 1435 aa14.39□□□□□ -0.11
POLR1A-203ENST00000409681 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
POLR1A-203ENST00000409681 CENPBP07199 599 aaPredicted RBP14.37□□□□□ -0.11
POLR1A-203ENST00000409681 NEUROD1Q13562 356 aa14.36□□□□□ -0.11
POLR1A-203ENST00000409681 TRHP20396 242 aaPredicted RBP14.35□□□□□ -0.11
POLR1A-203ENST00000409681 ZNF326Q5BKZ1 582 aaKnown RBP14.34□□□□□ -0.11
POLR1A-203ENST00000409681 ACIN1Q9UKV3 1341 aaKnown RBP14.33□□□□□ -0.12
POLR1A-203ENST00000409681 TNIKQ9UKE5 1360 aa14.32□□□□□ -0.12
POLR1A-203ENST00000409681 PLPPR3Q6T4P5 718 aa14.31□□□□□ -0.12
POLR1A-203ENST00000409681 CHGAP10645 457 aaKnown RBP14.3□□□□□ -0.12
POLR1A-203ENST00000409681 CC2D2AQ9P2K1 1620 aa14.3□□□□□ -0.12
POLR1A-203ENST00000409681 FHAD1B1AJZ9 1412 aa14.29□□□□□ -0.12
POLR1A-203ENST00000409681 CFDP1Q9UEE9 299 aaPredicted RBP14.28□□□□□ -0.12
POLR1A-203ENST00000409681 CEP162Q5TB80 1403 aa14.27□□□□□ -0.13
POLR1A-203ENST00000409681 OSCARQ8IYS5 282 aa14.26□□□□□ -0.13
POLR1A-203ENST00000409681 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.26□□□□□ -0.131e-6■■□□□ 14.2
POLR1A-203ENST00000409681 ARID4BQ4LE39 1312 aaPredicted RBP14.26□□□□□ -0.13
POLR1A-203ENST00000409681 CHIC2Q9UKJ5 165 aa14.25□□□□□ -0.13
POLR1A-203ENST00000409681 HMGXB3Q12766 1538 aa14.24□□□□□ -0.13
POLR1A-203ENST00000409681 NEFLP07196 543 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms