Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 E2F4-208ENST00000567007 2615 ntTSL 222.64■■□□□ 1.223e-6■□□□□ 8.1
YBX3P16989 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.193e-6■□□□□ 8.1
YBX3P16989 SPNS1-211ENST00000568829 780 ntTSL 522.29■■□□□ 1.163e-6■□□□□ 8.1
YBX3P16989 SMYD5-205ENST00000474652 753 ntTSL 522.11■■□□□ 1.133e-6■□□□□ 8.1
YBX3P16989 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.083e-6■□□□□ 8.1
YBX3P16989 ACADS-203ENST00000539690 1142 ntTSL 221.72■■□□□ 1.073e-6■□□□□ 8.1
YBX3P16989 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.063e-6■□□□□ 8.1
YBX3P16989 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.16■□□□□ 0.983e-6■□□□□ 8.1
YBX3P16989 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.15■□□□□ 0.983e-6■□□□□ 8.1
YBX3P16989 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.03■□□□□ 0.963e-6■□□□□ 8.1
YBX3P16989 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.99■□□□□ 0.953e-6■□□□□ 8.1
YBX3P16989 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.943e-6■□□□□ 8.1
YBX3P16989 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.933e-6■□□□□ 8.1
YBX3P16989 RPS19BP1-206ENST00000491966 647 ntTSL 220.67■□□□□ 0.93e-6■□□□□ 8.1
YBX3P16989 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.63■□□□□ 0.893e-6■□□□□ 8.1
YBX3P16989 MMS19-206ENST00000434392 882 ntTSL 520.6■□□□□ 0.893e-6■□□□□ 8.1
YBX3P16989 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.813e-6■□□□□ 8.1
YBX3P16989 SMC2-204ENST00000440179 705 ntTSL 319.63■□□□□ 0.733e-6■□□□□ 8.1
YBX3P16989 CAPN1-216ENST00000528739 341 ntTSL 518.77■□□□□ 0.63e-6■□□□□ 8.1
YBX3P16989 LSM6-204ENST00000504181 549 ntTSL 218.75■□□□□ 0.593e-6■□□□□ 8.1
YBX3P16989 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.73■□□□□ 0.593e-6■□□□□ 8.1
YBX3P16989 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC18.36■□□□□ 0.533e-6■□□□□ 8.1
YBX3P16989 SMYD5-203ENST00000413491 660 ntTSL 418.22■□□□□ 0.513e-6■□□□□ 8.1
YBX3P16989 CAPN1-207ENST00000527189 558 ntTSL 417.95■□□□□ 0.463e-6■□□□□ 8.1
YBX3P16989 CAPN1-228ENST00000534373 581 ntTSL 317.95■□□□□ 0.463e-6■□□□□ 8.1
YBX3P16989 FBXO18-215ENST00000494526 578 ntTSL 217.77■□□□□ 0.443e-6■□□□□ 8.1
YBX3P16989 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.433e-6■□□□□ 8.1
YBX3P16989 CAPN1-209ENST00000527469 584 ntTSL 317.29■□□□□ 0.363e-6■□□□□ 8.1
YBX3P16989 CAPN1-215ENST00000528396 571 ntTSL 417.29■□□□□ 0.363e-6■□□□□ 8.1
YBX3P16989 CAPN1-227ENST00000533909 573 ntTSL 417.29■□□□□ 0.363e-6■□□□□ 8.1
YBX3P16989 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.283e-6■□□□□ 8.1
YBX3P16989 FBXO18-207ENST00000469009 886 ntTSL 516.53■□□□□ 0.243e-6■□□□□ 8.1
YBX3P16989 BCAT1-208ENST00000544418 2320 ntTSL 1 (best)16.48■□□□□ 0.235e-9■□□□□ 8.1
YBX3P16989 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC16.12■□□□□ 0.173e-6■□□□□ 8.1
YBX3P16989 E2F4-203ENST00000563238 736 ntTSL 216.1■□□□□ 0.173e-6■□□□□ 8.1
YBX3P16989 ZNF24-205ENST00000590140 756 ntTSL 316.02■□□□□ 0.163e-6■□□□□ 8.1
YBX3P16989 HPRT1-201ENST00000298556 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.13e-6■□□□□ 8.1
YBX3P16989 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.063e-6■□□□□ 8.1
YBX3P16989 E2F4-212ENST00000568839 944 ntTSL 315.41■□□□□ 0.063e-6■□□□□ 8.1
YBX3P16989 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.073e-6■□□□□ 8.1
YBX3P16989 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.083e-6■□□□□ 8.1
YBX3P16989 CAPN1-221ENST00000531068 496 ntTSL 414.48□□□□□ -0.093e-6■□□□□ 8.1
YBX3P16989 CAPN1-210ENST00000527699 564 ntTSL 314.37□□□□□ -0.113e-6■□□□□ 8.1
YBX3P16989 CAPN1-217ENST00000529133 593 ntTSL 514.14□□□□□ -0.153e-6■□□□□ 8.1
YBX3P16989 CAPN1-218ENST00000530442 577 ntTSL 213.85□□□□□ -0.193e-6■□□□□ 8.1
YBX3P16989 RPS19BP1-205ENST00000488602 2801 ntTSL 213.59□□□□□ -0.233e-6■□□□□ 8.1
YBX3P16989 BCAT1-205ENST00000539282 1811 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.255e-9■□□□□ 8.1
YBX3P16989 ZNF24-206ENST00000593130 569 ntTSL 513.1□□□□□ -0.313e-6■□□□□ 8.1
YBX3P16989 NUP188-204ENST00000467044 584 ntTSL 213.08□□□□□ -0.323e-6■□□□□ 8.1
YBX3P16989 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC12.17□□□□□ -0.463e-6■□□□□ 8.1
YBX3P16989 ATOX1-201ENST00000313115 488 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.53e-6■□□□□ 8.1
YBX3P16989 BCAT1-206ENST00000539780 1360 ntTSL 2 BASIC11.52□□□□□ -0.575e-9■□□□□ 8.1
YBX3P16989 CYFIP1-202ENST00000561263 707 ntTSL 211.27□□□□□ -0.613e-6■□□□□ 8.1
YBX3P16989 ATOX1-206ENST00000522710 591 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.693e-6■□□□□ 8.1
YBX3P16989 MED23-204ENST00000368060 4446 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.713e-6■□□□□ 8.1
YBX3P16989 MED23-205ENST00000368068 5233 ntAPPRIS P4 TSL 1 (best) BASIC10.58□□□□□ -0.723e-6■□□□□ 8.1
YBX3P16989 MED23-202ENST00000368053 2811 ntTSL 1 (best) BASIC9.37□□□□□ -0.913e-6■□□□□ 8.1
YBX3P16989 CUL3-208ENST00000454323 688 ntTSL 39.32□□□□□ -0.923e-6■□□□□ 8.1
YBX3P16989 MED23-209ENST00000539158 1636 ntTSL 1 (best) BASIC9.29□□□□□ -0.923e-6■□□□□ 8.1
YBX3P16989 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.953e-6■□□□□ 8.1
YBX3P16989 CUL3-207ENST00000451538 546 ntTSL 59.05□□□□□ -0.963e-6■□□□□ 8.1
YBX3P16989 PAIP1-207ENST00000511321 706 ntTSL 58.77□□□□□ -1.013e-6■□□□□ 8.1
YBX3P16989 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC8.56□□□□□ -1.043e-6■□□□□ 8.1
YBX3P16989 DR1-203ENST00000481583 1244 ntTSL 1 (best)8.45□□□□□ -1.063e-6■□□□□ 8.1
YBX3P16989 BCAT1-210ENST00000612790 675 ntTSL 28.4□□□□□ -1.065e-9■□□□□ 8.1
YBX3P16989 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC8.2□□□□□ -1.13e-6■□□□□ 8.1
YBX3P16989 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC8.19□□□□□ -1.13e-6■□□□□ 8.1
YBX3P16989 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.68□□□□□ -1.183e-6■□□□□ 8.1
YBX3P16989 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.263e-6■□□□□ 8.1
YBX3P16989 DENND4C-203ENST00000380427 3479 ntTSL 27.18□□□□□ -1.263e-6■□□□□ 8.1
YBX3P16989 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.323e-6■□□□□ 8.1
YBX3P16989 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.333e-6■□□□□ 8.1
YBX3P16989 CNOT1-205ENST00000563283 551 ntTSL 36.58□□□□□ -1.363e-6■□□□□ 8.1
YBX3P16989 HPRT1-203ENST00000475720 599 ntTSL 36.51□□□□□ -1.373e-6■□□□□ 8.1
YBX3P16989 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.443e-6■□□□□ 8.1
YBX3P16989 CYFIP1-201ENST00000557890 408 ntTSL 26.02□□□□□ -1.453e-6■□□□□ 8.1
YBX3P16989 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.463e-6■□□□□ 8.1
YBX3P16989 HMG20A-204ENST00000558288 3558 nt5.76□□□□□ -1.493e-6■□□□□ 8.1
YBX3P16989 LSM6-205ENST00000507449 371 ntTSL 35.69□□□□□ -1.53e-6■□□□□ 8.1
YBX3P16989 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.53e-6■□□□□ 8.1
YBX3P16989 PAIP1-210ENST00000515338 726 ntTSL 55.42□□□□□ -1.543e-6■□□□□ 8.1
YBX3P16989 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.3□□□□□ -1.563e-6■□□□□ 8.1
YBX3P16989 CUL3-212ENST00000497715 2400 ntTSL 25.18□□□□□ -1.583e-6■□□□□ 8.1
YBX3P16989 DENND4C-204ENST00000380437 5963 ntTSL 54.79□□□□□ -1.643e-6■□□□□ 8.1
YBX3P16989 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.653e-6■□□□□ 8.1
YBX3P16989 FANCD2-204ENST00000421731 3425 ntTSL 1 (best)4.6□□□□□ -1.673e-6■□□□□ 8.1
YBX3P16989 DENND4C-206ENST00000494124 5335 ntTSL 1 (best)3.93□□□□□ -1.783e-6■□□□□ 8.1
YBX3P16989 TARS-211ENST00000509410 782 ntTSL 35.57□□□□□ -1.527e-16■□□□□ 8.1
YBX3P16989 SQLE-204ENST00000520493 737 ntTSL 38□□□□□ -1.131e-11■□□□□ 8.1
YBX3P16989 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.384e-36■□□□□ 8.1
YBX3P16989 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.932e-6■□□□□ 8.1
YBX3P16989 LZTR1-204ENST00000415817 2323 ntTSL 319.42■□□□□ 0.72e-6■□□□□ 8.1
YBX3P16989 TFAP4-205ENST00000575300 1326 ntTSL 216.8■□□□□ 0.282e-6■□□□□ 8.1
YBX3P16989 TFAP4-203ENST00000573476 785 ntTSL 316.78■□□□□ 0.282e-6■□□□□ 8.1
YBX3P16989 TFAP4-204ENST00000574639 595 ntTSL 515.32■□□□□ 0.042e-6■□□□□ 8.1
YBX3P16989 LZTR1-209ENST00000463909 3505 ntTSL 1 (best)12.5□□□□□ -0.412e-6■□□□□ 8.1
YBX3P16989 DDIT3-201ENST00000346473 906 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.013e-10■□□□□ 8.1
YBX3P16989 DDIT3-202ENST00000547303 872 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.063e-10■□□□□ 8.1
YBX3P16989 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC10.94□□□□□ -0.663e-10■□□□□ 8.1
YBX3P16989 DDIT3-206ENST00000623876 1151 nt6.65□□□□□ -1.343e-10■□□□□ 8.1
Retrieved 100 of 29,075 protein–RNA pairs in 646.4 ms