RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 AEBP2Q6ZN18 517 aaPredicted RBP27.97■■■□□ 2.07
SQLE-204ENST00000520493 CHIC1Q5VXU3 224 aa26.12■■□□□ 1.77
SQLE-204ENST00000520493 SENP3Q9H4L4 574 aaPredicted RBP23.95■■□□□ 1.42
SQLE-204ENST00000520493 PHF23Q9BUL5 403 aaPredicted RBP23.57■■□□□ 1.36
SQLE-204ENST00000520493 FOXD1Q16676 465 aa22.44■■□□□ 1.18
SQLE-204ENST00000520493 POTEDQ86YR6 584 aa22.03■■□□□ 1.12
SQLE-204ENST00000520493 MSH5O43196 834 aa21.24■□□□□ 0.99
SQLE-204ENST00000520493 PIAS4Q8N2W9 510 aaPredicted RBP20.83■□□□□ 0.93
SQLE-204ENST00000520493 PPP6R1Q9UPN7 881 aa20.44■□□□□ 0.86
SQLE-204ENST00000520493 ADRA2BP18089 450 aa20.36■□□□□ 0.85
SQLE-204ENST00000520493 PLPPR3Q6T4P5 718 aa20.3■□□□□ 0.84
SQLE-204ENST00000520493 MAPK8IP2Q13387 824 aaPredicted RBP18.94■□□□□ 0.62
SQLE-204ENST00000520493 DMRT2Q9Y5R5 561 aa18.87■□□□□ 0.61
SQLE-204ENST00000520493 CACNB1Q02641 598 aaPredicted RBP18.77■□□□□ 0.6
SQLE-204ENST00000520493 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
SQLE-204ENST00000520493 DCAF8L1A6NGE4 600 aa18.29■□□□□ 0.52
SQLE-204ENST00000520493 RNF39Q9H2S5 420 aa18.05■□□□□ 0.48
SQLE-204ENST00000520493 HOXD11P31277 338 aaPredicted RBP17.85■□□□□ 0.45
SQLE-204ENST00000520493 C1QBPQ07021 282 aaKnown RBP17.75■□□□□ 0.43
SQLE-204ENST00000520493 PPP4R3CPQ6ZMV5 832 aa17.74■□□□□ 0.43
SQLE-204ENST00000520493 CNKSR2Q8WXI2 1034 aa17.54■□□□□ 0.4
SQLE-204ENST00000520493 RNF216Q9NWF9 866 aaPredicted RBP17.54■□□□□ 0.4
SQLE-204ENST00000520493 DNAJC5BQ9UF47 199 aa17.3■□□□□ 0.36
SQLE-204ENST00000520493 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.13■□□□□ 0.33
SQLE-204ENST00000520493 POTEHQ6S545 545 aa17.12■□□□□ 0.33
SQLE-204ENST00000520493 NCBP3Q53F19 620 aaKnown RBP16.82■□□□□ 0.28
SQLE-204ENST00000520493 CAPN15O75808 1086 aa16.69■□□□□ 0.26
SQLE-204ENST00000520493 DSG3P32926 999 aa16.69■□□□□ 0.26
SQLE-204ENST00000520493 SPINK5Q9NQ38 1064 aaPredicted RBP16.66■□□□□ 0.26
SQLE-204ENST00000520493 U3KPZ7 1027 aaPredicted RBP16.63■□□□□ 0.25
SQLE-204ENST00000520493 NPM3O75607 178 aaKnown RBP16.58■□□□□ 0.24
SQLE-204ENST00000520493 TRHP20396 242 aaPredicted RBP16.27■□□□□ 0.2
SQLE-204ENST00000520493 ABCB7O75027 752 aa16.26■□□□□ 0.19
SQLE-204ENST00000520493 ZNF219Q9P2Y4 722 aaPredicted RBP16.1■□□□□ 0.17
SQLE-204ENST00000520493 APLP2Q06481 763 aa16.06■□□□□ 0.16
SQLE-204ENST00000520493 SLC4A2P04920 1241 aa16.01■□□□□ 0.15
SQLE-204ENST00000520493 RBM42Q9BTD8 480 aaKnown RBP15.93■□□□□ 0.14
SQLE-204ENST00000520493 CHRDL2Q6WN34 429 aa15.9■□□□□ 0.14
SQLE-204ENST00000520493 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
SQLE-204ENST00000520493 HNRNPUL2Q1KMD3 747 aaKnown RBP15.87■□□□□ 0.13
SQLE-204ENST00000520493 SAMD1Q6SPF0 538 aaPredicted RBP15.76■□□□□ 0.11
SQLE-204ENST00000520493 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
SQLE-204ENST00000520493 KCNA4P22459 653 aa15.64■□□□□ 0.09
SQLE-204ENST00000520493 POLA2Q14181 598 aa15.61■□□□□ 0.09
SQLE-204ENST00000520493 AKT1S1Q96B36 256 aa15.41■□□□□ 0.06
SQLE-204ENST00000520493 PIP4P2Q8N4L2 257 aa15.37■□□□□ 0.05
SQLE-204ENST00000520493 HAX1O00165 279 aa15.35■□□□□ 0.05
SQLE-204ENST00000520493 MYCNP04198 464 aaPredicted RBP15.34■□□□□ 0.05
SQLE-204ENST00000520493 REM2Q8IYK8 340 aaPredicted RBP15.3■□□□□ 0.04
SQLE-204ENST00000520493 ZBTB12Q9Y330 459 aaPredicted RBP15.16■□□□□ 0.02
SQLE-204ENST00000520493 PITPNM1O00562 1244 aa15.15■□□□□ 0.02
SQLE-204ENST00000520493 OSCARQ8IYS5 282 aa15.15■□□□□ 0.02
SQLE-204ENST00000520493 FXR2P51116 673 aaKnown RBP eCLIP15.12■□□□□ 0.012e-7■■□□□ 12.3
SQLE-204ENST00000520493 ATF5Q9Y2D1 282 aaPredicted RBP15.09■□□□□ 0.01
SQLE-204ENST00000520493 EVX2Q03828 476 aa15.07■□□□□ 0
SQLE-204ENST00000520493 FOXD4L1Q9NU39 408 aa14.79□□□□□ -0.04
SQLE-204ENST00000520493 PRKAR2AP13861 404 aaKnown RBP14.78□□□□□ -0.04
SQLE-204ENST00000520493 LHX8Q68G74 356 aa14.74□□□□□ -0.05
SQLE-204ENST00000520493 CLEC11AQ9Y240 323 aa14.71□□□□□ -0.05
SQLE-204ENST00000520493 SLC4A1APQ9BWU0 796 aaKnown RBP14.7□□□□□ -0.06
SQLE-204ENST00000520493 C19orf67A6NJJ6 358 aa14.67□□□□□ -0.06
SQLE-204ENST00000520493 GABBR2O75899 941 aa14.67□□□□□ -0.06
SQLE-204ENST00000520493 SPDYE2BA6NHP3 402 aa14.65□□□□□ -0.06
SQLE-204ENST00000520493 SPDYE6P0CI01 402 aa14.65□□□□□ -0.06
SQLE-204ENST00000520493 SPDYE2Q495Y8 402 aa14.65□□□□□ -0.06
SQLE-204ENST00000520493 SPDYE1Q8NFV5 336 aaPredicted RBP14.6□□□□□ -0.07
SQLE-204ENST00000520493 FBLN2P98095 1184 aa14.55□□□□□ -0.08
SQLE-204ENST00000520493 PLSCR2Q9NRY7 297 aa14.51□□□□□ -0.09
SQLE-204ENST00000520493 CHADLQ6NUI6 762 aa14.49□□□□□ -0.09
SQLE-204ENST00000520493 ZNF692Q9BU19 519 aaPredicted RBP14.42□□□□□ -0.1
SQLE-204ENST00000520493 ATXN8OSP0DMR3 200 aa14.35□□□□□ -0.11
SQLE-204ENST00000520493 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
SQLE-204ENST00000520493 ZBTB22O15209 634 aa14.34□□□□□ -0.11
SQLE-204ENST00000520493 POTEIP0CG38 1075 aa14.34□□□□□ -0.11
SQLE-204ENST00000520493 PRR29P0C7W0 189 aa14.31□□□□□ -0.12
SQLE-204ENST00000520493 MKRN4PQ13434 485 aaPredicted RBP14.31□□□□□ -0.12
SQLE-204ENST00000520493 CD44P16070 742 aaKnown RBP14.26□□□□□ -0.13
SQLE-204ENST00000520493 PABPN1Q86U42 306 aaKnown RBP eCLIP14.19□□□□□ -0.14
SQLE-204ENST00000520493 DCBLD2Q96PD2 775 aa14.16□□□□□ -0.14
SQLE-204ENST00000520493 FARP1Q9Y4F1 1045 aaPredicted RBP14.13□□□□□ -0.15
SQLE-204ENST00000520493 CLCN6P51797 869 aa14.09□□□□□ -0.15
SQLE-204ENST00000520493 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
SQLE-204ENST00000520493 OTUD5Q96G74 571 aa13.96□□□□□ -0.17
SQLE-204ENST00000520493 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
SQLE-204ENST00000520493 ZNF579Q8NAF0 562 aaKnown RBP13.94□□□□□ -0.18
SQLE-204ENST00000520493 POTEMA6NI47 508 aa13.93□□□□□ -0.18
SQLE-204ENST00000520493 GALR2O43603 387 aaPredicted RBP13.89□□□□□ -0.19
SQLE-204ENST00000520493 POTEB2H3BUK9 544 aa13.87□□□□□ -0.19
SQLE-204ENST00000520493 POTEGQ6S5H5 508 aa13.87□□□□□ -0.19
SQLE-204ENST00000520493 CSRNP3Q8WYN3 585 aa13.87□□□□□ -0.19
SQLE-204ENST00000520493 CREBZFQ9NS37 354 aa13.74□□□□□ -0.21
SQLE-204ENST00000520493 PHF12Q96QT6 1004 aa13.71□□□□□ -0.21
SQLE-204ENST00000520493 PAK3O75914 559 aaPredicted RBP13.68□□□□□ -0.22
SQLE-204ENST00000520493 PELP1Q8IZL8 1130 aaKnown RBP13.68□□□□□ -0.22
SQLE-204ENST00000520493 PCDH10Q9P2E7 1040 aa13.65□□□□□ -0.22
SQLE-204ENST00000520493 STAG3Q9UJ98 1225 aa13.59□□□□□ -0.23
SQLE-204ENST00000520493 METRNQ9UJH8 293 aa13.58□□□□□ -0.24
SQLE-204ENST00000520493 FAM163AQ96GL9 167 aaPredicted RBP13.55□□□□□ -0.24
SQLE-204ENST00000520493 POTEJP0CG39 1038 aa13.54□□□□□ -0.24
SQLE-204ENST00000520493 SLC39A7Q92504 469 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms