RNA–Protein interactions for RNA: ENST00000528739.5

CAPN1-216, Transcript of calpain 1, humanhuman

TSL 5

Gene CAPN1, Length 341 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-216ENST00000528739 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
CAPN1-216ENST00000528739 CCDC180Q9P1Z9 1646 aa30.79■■■□□ 2.52
CAPN1-216ENST00000528739 ABCC9O60706 1549 aa30.57■■■□□ 2.49
CAPN1-216ENST00000528739 DCAF8L2P0C7V8 631 aa29.44■■■□□ 2.3
CAPN1-216ENST00000528739 RB1CC1Q8TDY2 1594 aa29.21■■■□□ 2.27
CAPN1-216ENST00000528739 NACADO15069 1562 aa29.09■■■□□ 2.25
CAPN1-216ENST00000528739 ZCCHC6Q5VYS8 1495 aaKnown RBP28.78■■■□□ 2.2
CAPN1-216ENST00000528739 MYO15BQ96JP2 1530 aa28.74■■■□□ 2.19
CAPN1-216ENST00000528739 PABPN1Q86U42 306 aaKnown RBP eCLIP28.64■■■□□ 2.18
CAPN1-216ENST00000528739 DCAF1Q9Y4B6 1507 aa28.57■■■□□ 2.16
CAPN1-216ENST00000528739 UNC13AQ9UPW8 1703 aa28.4■■■□□ 2.14
CAPN1-216ENST00000528739 DNAJC5BQ9UF47 199 aa28.26■■■□□ 2.11
CAPN1-216ENST00000528739 SCRIBQ14160 1630 aa28.25■■■□□ 2.11
CAPN1-216ENST00000528739 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
CAPN1-216ENST00000528739 SHROOM4Q9ULL8 1493 aa27.9■■■□□ 2.06
CAPN1-216ENST00000528739 EIF4G1Q04637 1599 aaKnown RBP27.59■■■□□ 2.01
CAPN1-216ENST00000528739 CC2D2AQ9P2K1 1620 aa27.55■■■□□ 2
CAPN1-216ENST00000528739 CECR2Q9BXF3 1484 aa27.47■■□□□ 1.99
CAPN1-216ENST00000528739 SMARCA4P51532 1647 aa26.91■■□□□ 1.9
CAPN1-216ENST00000528739 BAZ1AQ9NRL2 1556 aaPredicted RBP26.88■■□□□ 1.89
CAPN1-216ENST00000528739 ATAD2BQ9ULI0 1458 aa26.87■■□□□ 1.89
CAPN1-216ENST00000528739 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
CAPN1-216ENST00000528739 SMARCA2P51531 1590 aa26.81■■□□□ 1.88
CAPN1-216ENST00000528739 MROH2BQ7Z745 1585 aa26.73■■□□□ 1.87
CAPN1-216ENST00000528739 BAZ1BQ9UIG0 1483 aaKnown RBP26.68■■□□□ 1.86
CAPN1-216ENST00000528739 HMGXB3Q12766 1538 aa26.65■■□□□ 1.86
CAPN1-216ENST00000528739 PEG3Q9GZU2 1588 aa26.57■■□□□ 1.84
CAPN1-216ENST00000528739 WIZO95785 1651 aa26.43■■□□□ 1.82
CAPN1-216ENST00000528739 ERCC6Q03468 1493 aa26.42■■□□□ 1.82
CAPN1-216ENST00000528739 RSF1Q96T23 1441 aaPredicted RBP26.37■■□□□ 1.81
CAPN1-216ENST00000528739 NESP48681 1621 aa26.36■■□□□ 1.81
CAPN1-216ENST00000528739 LAMC3Q9Y6N6 1575 aa26.17■■□□□ 1.78
CAPN1-216ENST00000528739 CADPSQ9ULU8 1353 aa26.15■■□□□ 1.78
CAPN1-216ENST00000528739 PDS5BQ9NTI5 1447 aa26.12■■□□□ 1.77
CAPN1-216ENST00000528739 TOP2AP11388 1531 aaKnown RBP26.11■■□□□ 1.77
CAPN1-216ENST00000528739 CUX2O14529 1486 aa26.08■■□□□ 1.77
CAPN1-216ENST00000528739 KIF21AQ7Z4S6 1674 aa25.93■■□□□ 1.74
CAPN1-216ENST00000528739 THOC2Q8NI27 1593 aaKnown RBP25.87■■□□□ 1.73
CAPN1-216ENST00000528739 CFTRP13569 1480 aa25.87■■□□□ 1.73
CAPN1-216ENST00000528739 CCDC88BA6NC98 1476 aa25.86■■□□□ 1.73
CAPN1-216ENST00000528739 FANCD2Q9BXW9 1451 aa25.84■■□□□ 1.73
CAPN1-216ENST00000528739 CEP164Q9UPV0 1460 aa25.83■■□□□ 1.73
CAPN1-216ENST00000528739 MRC2Q9UBG0 1479 aa25.81■■□□□ 1.72
CAPN1-216ENST00000528739 SUPT5HO00267 1087 aaKnown RBP25.81■■□□□ 1.72
CAPN1-216ENST00000528739 WDR62O43379 1518 aa25.66■■□□□ 1.7
CAPN1-216ENST00000528739 DNAJC5Q9H3Z4 198 aa25.63■■□□□ 1.69
CAPN1-216ENST00000528739 URB2Q14146 1524 aaKnown RBP25.55■■□□□ 1.68
CAPN1-216ENST00000528739 PRDM2Q13029 1718 aa25.52■■□□□ 1.68
CAPN1-216ENST00000528739 TOPBP1Q92547 1522 aa25.37■■□□□ 1.65
CAPN1-216ENST00000528739 ABCC8Q09428 1581 aa25.36■■□□□ 1.65
CAPN1-216ENST00000528739 IFT140Q96RY7 1462 aa25.28■■□□□ 1.64
CAPN1-216ENST00000528739 DNMBPQ6XZF7 1577 aa25.28■■□□□ 1.64
CAPN1-216ENST00000528739 ZNF608Q9ULD9 1512 aaPredicted RBP25.19■■□□□ 1.62
CAPN1-216ENST00000528739 POLA1P09884 1462 aaPredicted RBP25.14■■□□□ 1.61
CAPN1-216ENST00000528739 OSCARQ8IYS5 282 aa25.13■■□□□ 1.61
CAPN1-216ENST00000528739 SOGA1O94964 1423 aa25.12■■□□□ 1.61
CAPN1-216ENST00000528739 RAD54L2Q9Y4B4 1467 aa25.1■■□□□ 1.61
CAPN1-216ENST00000528739 CUX1P39880 1505 aa25.08■■□□□ 1.61
CAPN1-216ENST00000528739 AQRO60306 1485 aaKnown RBP eCLIP25.08■■□□□ 1.64e-7■■■■□ 19.3
CAPN1-216ENST00000528739 FGD5Q6ZNL6 1462 aa25.07■■□□□ 1.6
CAPN1-216ENST00000528739 TDRD9Q8NDG6 1382 aaKnown RBP25.04■■□□□ 1.6
CAPN1-216ENST00000528739 TARBP1Q13395 1621 aaKnown RBP25.02■■□□□ 1.6
CAPN1-216ENST00000528739 EIF4G3O43432 1585 aaKnown RBP25.01■■□□□ 1.59
CAPN1-216ENST00000528739 FBLN2P98095 1184 aa25.01■■□□□ 1.59
CAPN1-216ENST00000528739 WRNQ14191 1432 aaPredicted RBP eCLIP24.91■■□□□ 1.58
CAPN1-216ENST00000528739 TRIM41Q8WV44 630 aa24.88■■□□□ 1.57
CAPN1-216ENST00000528739 CHMP7Q8WUX9 453 aaPredicted RBP24.84■■□□□ 1.57
CAPN1-216ENST00000528739 SNAPC4Q5SXM2 1469 aa24.81■■□□□ 1.56
CAPN1-216ENST00000528739 GRIN2BQ13224 1484 aa24.8■■□□□ 1.56
CAPN1-216ENST00000528739 WDR97A6NE52 1622 aa24.79■■□□□ 1.56
CAPN1-216ENST00000528739 GAPVD1Q14C86 1478 aa24.78■■□□□ 1.56
CAPN1-216ENST00000528739 SYNJ1O43426 1573 aa24.78■■□□□ 1.56
CAPN1-216ENST00000528739 TOP2BQ02880 1626 aa24.77■■□□□ 1.56
CAPN1-216ENST00000528739 ABCA10Q8WWZ4 1543 aa24.76■■□□□ 1.55
CAPN1-216ENST00000528739 CHD1O14646 1710 aa24.73■■□□□ 1.55
CAPN1-216ENST00000528739 BIVM-ERCC5R4GMW8 1640 aa24.73■■□□□ 1.55
CAPN1-216ENST00000528739 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
CAPN1-216ENST00000528739 SYNJ2O15056 1496 aa24.64■■□□□ 1.54
CAPN1-216ENST00000528739 PBRM1Q86U86 1689 aa24.63■■□□□ 1.53
CAPN1-216ENST00000528739 ABCA5Q8WWZ7 1642 aa24.63■■□□□ 1.53
CAPN1-216ENST00000528739 RIMBP3CA6NJZ7 1639 aa24.58■■□□□ 1.53
CAPN1-216ENST00000528739 RIMBP3BA6NNM3 1639 aa24.58■■□□□ 1.53
CAPN1-216ENST00000528739 RIMBP3Q9UFD9 1639 aa24.58■■□□□ 1.53
CAPN1-216ENST00000528739 ARHGEF11O15085 1522 aa24.58■■□□□ 1.53
CAPN1-216ENST00000528739 CYB5RLQ6IPT4 315 aa24.56■■□□□ 1.52
CAPN1-216ENST00000528739 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
CAPN1-216ENST00000528739 ERICH3Q5RHP9 1530 aa24.46■■□□□ 1.51
CAPN1-216ENST00000528739 GRIN2AQ12879 1464 aa24.45■■□□□ 1.51
CAPN1-216ENST00000528739 ADAMTS12P58397 1594 aa24.45■■□□□ 1.5
CAPN1-216ENST00000528739 CLASP1Q7Z460 1538 aa24.44■■□□□ 1.5
CAPN1-216ENST00000528739 KIF27Q86VH2 1401 aa24.43■■□□□ 1.5
CAPN1-216ENST00000528739 ARAP1Q96P48 1450 aa24.36■■□□□ 1.49
CAPN1-216ENST00000528739 IGF1RP08069 1367 aa24.33■■□□□ 1.49
CAPN1-216ENST00000528739 NUP160Q12769 1436 aa24.32■■□□□ 1.48
CAPN1-216ENST00000528739 CEP170Q5SW79 1584 aa24.31■■□□□ 1.48
CAPN1-216ENST00000528739 JPH4Q96JJ6 628 aa24.23■■□□□ 1.47
CAPN1-216ENST00000528739 CARMIL1Q5VZK9 1371 aa24.23■■□□□ 1.47
CAPN1-216ENST00000528739 TRHP20396 242 aaPredicted RBP24.22■■□□□ 1.47
CAPN1-216ENST00000528739 CUL7Q14999 1698 aa24.18■■□□□ 1.46
CAPN1-216ENST00000528739 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms