RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 AEBP2Q6ZN18 517 aaPredicted RBP18.64■□□□□ 0.57
LSM6-205ENST00000507449 CHIC1Q5VXU3 224 aa17.76■□□□□ 0.43
LSM6-205ENST00000507449 SENP3Q9H4L4 574 aaPredicted RBP16.32■□□□□ 0.2
LSM6-205ENST00000507449 PHF23Q9BUL5 403 aaPredicted RBP15.88■□□□□ 0.13
LSM6-205ENST00000507449 POTEDQ86YR6 584 aa15.34■□□□□ 0.05
LSM6-205ENST00000507449 FOXD1Q16676 465 aa15.11■□□□□ 0.01
LSM6-205ENST00000507449 MSH5O43196 834 aa14.66□□□□□ -0.06
LSM6-205ENST00000507449 PIAS4Q8N2W9 510 aaPredicted RBP14.07□□□□□ -0.16
LSM6-205ENST00000507449 PLPPR3Q6T4P5 718 aa13.52□□□□□ -0.25
LSM6-205ENST00000507449 PPP6R1Q9UPN7 881 aa13.46□□□□□ -0.25
LSM6-205ENST00000507449 ADRA2BP18089 450 aa13.44□□□□□ -0.26
LSM6-205ENST00000507449 CACNB1Q02641 598 aaPredicted RBP12.99□□□□□ -0.33
LSM6-205ENST00000507449 DMRT2Q9Y5R5 561 aa12.74□□□□□ -0.37
LSM6-205ENST00000507449 SCAF1Q9H7N4 1312 aaKnown RBP12.65□□□□□ -0.38
LSM6-205ENST00000507449 MAPK8IP2Q13387 824 aaPredicted RBP12.52□□□□□ -0.41
LSM6-205ENST00000507449 DCAF8L1A6NGE4 600 aa12.37□□□□□ -0.43
LSM6-205ENST00000507449 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
LSM6-205ENST00000507449 C1QBPQ07021 282 aaKnown RBP12.2□□□□□ -0.46
LSM6-205ENST00000507449 HOXD11P31277 338 aaPredicted RBP11.97□□□□□ -0.49
LSM6-205ENST00000507449 POTEHQ6S545 545 aa11.94□□□□□ -0.5
LSM6-205ENST00000507449 DNAJC5BQ9UF47 199 aa11.83□□□□□ -0.52
LSM6-205ENST00000507449 RNF216Q9NWF9 866 aaPredicted RBP11.75□□□□□ -0.53
LSM6-205ENST00000507449 KCNA4P22459 653 aa11.71□□□□□ -0.53
LSM6-205ENST00000507449 CNKSR2Q8WXI2 1034 aa11.69□□□□□ -0.54
LSM6-205ENST00000507449 PPP4R3CPQ6ZMV5 832 aa11.66□□□□□ -0.54
LSM6-205ENST00000507449 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.54□□□□□ -0.562e-6■□□□□ 11.1
LSM6-205ENST00000507449 NCBP3Q53F19 620 aaKnown RBP11.32□□□□□ -0.6
LSM6-205ENST00000507449 NPM3O75607 178 aaKnown RBP11.26□□□□□ -0.61
LSM6-205ENST00000507449 CAPN15O75808 1086 aa11.26□□□□□ -0.61
LSM6-205ENST00000507449 DSG3P32926 999 aa11.24□□□□□ -0.61
LSM6-205ENST00000507449 EHMT2Q96KQ7 1210 aa11.16□□□□□ -0.62
LSM6-205ENST00000507449 SLC4A1APQ9BWU0 796 aaKnown RBP11.14□□□□□ -0.63
LSM6-205ENST00000507449 SPINK5Q9NQ38 1064 aaPredicted RBP11.06□□□□□ -0.64
LSM6-205ENST00000507449 APLP2Q06481 763 aa11.04□□□□□ -0.64
LSM6-205ENST00000507449 U3KPZ7 1027 aaPredicted RBP11.04□□□□□ -0.64
LSM6-205ENST00000507449 RBM42Q9BTD8 480 aaKnown RBP10.99□□□□□ -0.65
LSM6-205ENST00000507449 CSRNP3Q8WYN3 585 aa10.95□□□□□ -0.66
LSM6-205ENST00000507449 ZNF219Q9P2Y4 722 aaPredicted RBP10.93□□□□□ -0.66
LSM6-205ENST00000507449 CHRDL2Q6WN34 429 aa10.88□□□□□ -0.67
LSM6-205ENST00000507449 SP7Q8TDD2 431 aaPredicted RBP10.88□□□□□ -0.67
LSM6-205ENST00000507449 TRHP20396 242 aaPredicted RBP10.87□□□□□ -0.67
LSM6-205ENST00000507449 ZBTB22O15209 634 aa10.83□□□□□ -0.68
LSM6-205ENST00000507449 ABCB7O75027 752 aa10.82□□□□□ -0.68
LSM6-205ENST00000507449 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.79□□□□□ -0.68
LSM6-205ENST00000507449 HNRNPUL2Q1KMD3 747 aaKnown RBP10.79□□□□□ -0.68
LSM6-205ENST00000507449 FOXD4L1Q9NU39 408 aa10.64□□□□□ -0.71
LSM6-205ENST00000507449 SAMD1Q6SPF0 538 aaPredicted RBP10.62□□□□□ -0.71
LSM6-205ENST00000507449 SLC4A2P04920 1241 aa10.6□□□□□ -0.71
LSM6-205ENST00000507449 HAX1O00165 279 aa10.53□□□□□ -0.72
LSM6-205ENST00000507449 AKT1S1Q96B36 256 aa10.48□□□□□ -0.73
LSM6-205ENST00000507449 PIP4P2Q8N4L2 257 aa10.4□□□□□ -0.74
LSM6-205ENST00000507449 POLA2Q14181 598 aa10.38□□□□□ -0.75
LSM6-205ENST00000507449 MYCNP04198 464 aaPredicted RBP10.35□□□□□ -0.75
LSM6-205ENST00000507449 ZBTB12Q9Y330 459 aaPredicted RBP10.33□□□□□ -0.76
LSM6-205ENST00000507449 REM2Q8IYK8 340 aaPredicted RBP10.29□□□□□ -0.76
LSM6-205ENST00000507449 ATXN8OSP0DMR3 200 aa10.23□□□□□ -0.77
LSM6-205ENST00000507449 FXR2P51116 673 aaKnown RBP eCLIP10.23□□□□□ -0.77
LSM6-205ENST00000507449 PLSCR2Q9NRY7 297 aa10.21□□□□□ -0.77
LSM6-205ENST00000507449 LHX8Q68G74 356 aa10.2□□□□□ -0.78
LSM6-205ENST00000507449 PITPNM1O00562 1244 aa10.16□□□□□ -0.78
LSM6-205ENST00000507449 ATF5Q9Y2D1 282 aaPredicted RBP10.15□□□□□ -0.78
LSM6-205ENST00000507449 EVX2Q03828 476 aa10.06□□□□□ -0.8
LSM6-205ENST00000507449 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
LSM6-205ENST00000507449 GABBR2O75899 941 aa9.97□□□□□ -0.81
LSM6-205ENST00000507449 PRKAR2AP13861 404 aaKnown RBP9.96□□□□□ -0.82
LSM6-205ENST00000507449 C19orf67A6NJJ6 358 aa9.94□□□□□ -0.82
LSM6-205ENST00000507449 SPDYE1Q8NFV5 336 aaPredicted RBP9.88□□□□□ -0.83
LSM6-205ENST00000507449 CLEC11AQ9Y240 323 aa9.85□□□□□ -0.83
LSM6-205ENST00000507449 SPDYE2BA6NHP3 402 aa9.83□□□□□ -0.84
LSM6-205ENST00000507449 SPDYE6P0CI01 402 aa9.83□□□□□ -0.84
LSM6-205ENST00000507449 CLCN6P51797 869 aa9.83□□□□□ -0.84
LSM6-205ENST00000507449 FKBP8Q14318 412 aa9.83□□□□□ -0.84
LSM6-205ENST00000507449 SPDYE2Q495Y8 402 aa9.83□□□□□ -0.84
LSM6-205ENST00000507449 FBLN2P98095 1184 aa9.73□□□□□ -0.85
LSM6-205ENST00000507449 MKRN4PQ13434 485 aaPredicted RBP9.72□□□□□ -0.85
LSM6-205ENST00000507449 DCBLD2Q96PD2 775 aa9.71□□□□□ -0.86
LSM6-205ENST00000507449 PCDH10Q9P2E7 1040 aa9.69□□□□□ -0.86
LSM6-205ENST00000507449 POTEMA6NI47 508 aa9.64□□□□□ -0.87
LSM6-205ENST00000507449 CD44P16070 742 aaKnown RBP9.62□□□□□ -0.87
LSM6-205ENST00000507449 PRR29P0C7W0 189 aa9.61□□□□□ -0.87
LSM6-205ENST00000507449 POTEIP0CG38 1075 aa9.61□□□□□ -0.87
LSM6-205ENST00000507449 CHADLQ6NUI6 762 aa9.59□□□□□ -0.87
LSM6-205ENST00000507449 POTEGQ6S5H5 508 aa9.58□□□□□ -0.88
LSM6-205ENST00000507449 ZNF692Q9BU19 519 aaPredicted RBP9.58□□□□□ -0.88
LSM6-205ENST00000507449 SPDYE4A6NLX3 237 aa9.55□□□□□ -0.88
LSM6-205ENST00000507449 PROM2Q8N271 834 aa9.5□□□□□ -0.89
LSM6-205ENST00000507449 SSUH2Q9Y2M2 353 aa9.5□□□□□ -0.89
LSM6-205ENST00000507449 OTUD5Q96G74 571 aa9.47□□□□□ -0.89
LSM6-205ENST00000507449 RTN4Q9NQC3 1192 aaKnown RBP9.47□□□□□ -0.89
LSM6-205ENST00000507449 FARP1Q9Y4F1 1045 aaPredicted RBP9.47□□□□□ -0.89
LSM6-205ENST00000507449 ZNF579Q8NAF0 562 aaKnown RBP9.42□□□□□ -0.9
LSM6-205ENST00000507449 AMER1Q5JTC6 1135 aaPredicted RBP9.4□□□□□ -0.9
LSM6-205ENST00000507449 ZRANB1Q9UGI0 708 aa9.38□□□□□ -0.91
LSM6-205ENST00000507449 MAMSTRQ6ZN01 415 aa9.37□□□□□ -0.91
LSM6-205ENST00000507449 PABPN1Q86U42 306 aaKnown RBP eCLIP9.36□□□□□ -0.91
LSM6-205ENST00000507449 FBXO3Q9UK99 471 aa9.34□□□□□ -0.91
LSM6-205ENST00000507449 PAK3O75914 559 aaPredicted RBP9.33□□□□□ -0.92
LSM6-205ENST00000507449 VASPP50552 380 aaPredicted RBP9.28□□□□□ -0.92
LSM6-205ENST00000507449 POTEB2H3BUK9 544 aa9.26□□□□□ -0.93
LSM6-205ENST00000507449 GALR2O43603 387 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms