RNA–Protein interactions for RNA: ENST00000534373.5

CAPN1-228, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-228ENST00000534373 NISCHQ9Y2I1 1504 aa33.13■■■□□ 2.89
CAPN1-228ENST00000534373 CCDC180Q9P1Z9 1646 aa29.6■■■□□ 2.33
CAPN1-228ENST00000534373 ABCC9O60706 1549 aa29.34■■■□□ 2.29
CAPN1-228ENST00000534373 RB1CC1Q8TDY2 1594 aa28.08■■■□□ 2.09
CAPN1-228ENST00000534373 NACADO15069 1562 aa27.99■■■□□ 2.07
CAPN1-228ENST00000534373 DCAF8L2P0C7V8 631 aa27.86■■■□□ 2.05
CAPN1-228ENST00000534373 MYO15BQ96JP2 1530 aa27.73■■■□□ 2.03
CAPN1-228ENST00000534373 ZCCHC6Q5VYS8 1495 aaKnown RBP27.49■■□□□ 1.99
CAPN1-228ENST00000534373 DCAF1Q9Y4B6 1507 aa27.44■■□□□ 1.98
CAPN1-228ENST00000534373 PABPN1Q86U42 306 aaKnown RBP eCLIP27.37■■□□□ 1.97
CAPN1-228ENST00000534373 UNC13AQ9UPW8 1703 aa27.34■■□□□ 1.97
CAPN1-228ENST00000534373 DNAJC5BQ9UF47 199 aa27.34■■□□□ 1.97
CAPN1-228ENST00000534373 BICRAQ9NZM4 1560 aa27.21■■□□□ 1.95
CAPN1-228ENST00000534373 SHROOM4Q9ULL8 1493 aa26.99■■□□□ 1.91
CAPN1-228ENST00000534373 SCRIBQ14160 1630 aa26.91■■□□□ 1.9
CAPN1-228ENST00000534373 EIF4G1Q04637 1599 aaKnown RBP26.54■■□□□ 1.84
CAPN1-228ENST00000534373 CC2D2AQ9P2K1 1620 aa26.52■■□□□ 1.84
CAPN1-228ENST00000534373 CECR2Q9BXF3 1484 aa26.44■■□□□ 1.82
CAPN1-228ENST00000534373 NCAPD3P42695 1498 aa25.85■■□□□ 1.73
CAPN1-228ENST00000534373 ATAD2BQ9ULI0 1458 aa25.76■■□□□ 1.71
CAPN1-228ENST00000534373 SMARCA4P51532 1647 aa25.75■■□□□ 1.71
CAPN1-228ENST00000534373 SMARCA2P51531 1590 aa25.72■■□□□ 1.71
CAPN1-228ENST00000534373 BAZ1AQ9NRL2 1556 aaPredicted RBP25.71■■□□□ 1.71
CAPN1-228ENST00000534373 HMGXB3Q12766 1538 aa25.63■■□□□ 1.69
CAPN1-228ENST00000534373 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
CAPN1-228ENST00000534373 BAZ1BQ9UIG0 1483 aaKnown RBP25.51■■□□□ 1.67
CAPN1-228ENST00000534373 MROH2BQ7Z745 1585 aa25.49■■□□□ 1.67
CAPN1-228ENST00000534373 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
CAPN1-228ENST00000534373 CUX2O14529 1486 aa25.27■■□□□ 1.64
CAPN1-228ENST00000534373 NESP48681 1621 aa25.25■■□□□ 1.63
CAPN1-228ENST00000534373 LAMC3Q9Y6N6 1575 aa25.19■■□□□ 1.62
CAPN1-228ENST00000534373 WIZO95785 1651 aa25.16■■□□□ 1.62
CAPN1-228ENST00000534373 RSF1Q96T23 1441 aaPredicted RBP25.1■■□□□ 1.61
CAPN1-228ENST00000534373 PDS5BQ9NTI5 1447 aa25.08■■□□□ 1.61
CAPN1-228ENST00000534373 CADPSQ9ULU8 1353 aa25.07■■□□□ 1.6
CAPN1-228ENST00000534373 DNAJC5Q9H3Z4 198 aa25.01■■□□□ 1.59
CAPN1-228ENST00000534373 THOC2Q8NI27 1593 aaKnown RBP24.95■■□□□ 1.58
CAPN1-228ENST00000534373 TOP2AP11388 1531 aaKnown RBP24.91■■□□□ 1.58
CAPN1-228ENST00000534373 KIF21AQ7Z4S6 1674 aa24.91■■□□□ 1.58
CAPN1-228ENST00000534373 CFTRP13569 1480 aa24.83■■□□□ 1.56
CAPN1-228ENST00000534373 MRC2Q9UBG0 1479 aa24.79■■□□□ 1.56
CAPN1-228ENST00000534373 FANCD2Q9BXW9 1451 aa24.74■■□□□ 1.55
CAPN1-228ENST00000534373 CEP164Q9UPV0 1460 aa24.74■■□□□ 1.55
CAPN1-228ENST00000534373 WDR62O43379 1518 aa24.71■■□□□ 1.55
CAPN1-228ENST00000534373 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.54
CAPN1-228ENST00000534373 PRDM2Q13029 1718 aa24.5■■□□□ 1.51
CAPN1-228ENST00000534373 URB2Q14146 1524 aaKnown RBP24.49■■□□□ 1.51
CAPN1-228ENST00000534373 ABCC8Q09428 1581 aa24.35■■□□□ 1.49
CAPN1-228ENST00000534373 TOPBP1Q92547 1522 aa24.29■■□□□ 1.48
CAPN1-228ENST00000534373 IFT140Q96RY7 1462 aa24.27■■□□□ 1.48
CAPN1-228ENST00000534373 DNMBPQ6XZF7 1577 aa24.22■■□□□ 1.47
CAPN1-228ENST00000534373 OSCARQ8IYS5 282 aa24.2■■□□□ 1.46
CAPN1-228ENST00000534373 ZNF608Q9ULD9 1512 aaPredicted RBP24.14■■□□□ 1.45
CAPN1-228ENST00000534373 SUPT5HO00267 1087 aaKnown RBP24.13■■□□□ 1.45
CAPN1-228ENST00000534373 POLA1P09884 1462 aaPredicted RBP24.06■■□□□ 1.44
CAPN1-228ENST00000534373 TARBP1Q13395 1621 aaKnown RBP24.03■■□□□ 1.44
CAPN1-228ENST00000534373 SOGA1O94964 1423 aa24■■□□□ 1.43
CAPN1-228ENST00000534373 EIF4G3O43432 1585 aaKnown RBP23.99■■□□□ 1.43
CAPN1-228ENST00000534373 AQRO60306 1485 aaKnown RBP eCLIP23.98■■□□□ 1.434e-7■■■■□ 19.3
CAPN1-228ENST00000534373 RAD54L2Q9Y4B4 1467 aa23.94■■□□□ 1.42
CAPN1-228ENST00000534373 CUX1P39880 1505 aa23.93■■□□□ 1.42
CAPN1-228ENST00000534373 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
CAPN1-228ENST00000534373 FGD5Q6ZNL6 1462 aa23.92■■□□□ 1.42
CAPN1-228ENST00000534373 WDR97A6NE52 1622 aa23.88■■□□□ 1.41
CAPN1-228ENST00000534373 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
CAPN1-228ENST00000534373 FBLN2P98095 1184 aa23.79■■□□□ 1.4
CAPN1-228ENST00000534373 CHD1O14646 1710 aa23.75■■□□□ 1.39
CAPN1-228ENST00000534373 GRIN2BQ13224 1484 aa23.75■■□□□ 1.39
CAPN1-228ENST00000534373 MAGI1Q96QZ7 1491 aaPredicted RBP23.73■■□□□ 1.39
CAPN1-228ENST00000534373 RIMBP3CA6NJZ7 1639 aa23.73■■□□□ 1.39
CAPN1-228ENST00000534373 RIMBP3BA6NNM3 1639 aa23.73■■□□□ 1.39
CAPN1-228ENST00000534373 RIMBP3Q9UFD9 1639 aa23.73■■□□□ 1.39
CAPN1-228ENST00000534373 SNAPC4Q5SXM2 1469 aa23.72■■□□□ 1.39
CAPN1-228ENST00000534373 ABCA10Q8WWZ4 1543 aa23.71■■□□□ 1.39
CAPN1-228ENST00000534373 ARHGEF11O15085 1522 aa23.7■■□□□ 1.38
CAPN1-228ENST00000534373 CHMP7Q8WUX9 453 aaPredicted RBP23.7■■□□□ 1.38
CAPN1-228ENST00000534373 GAPVD1Q14C86 1478 aa23.68■■□□□ 1.38
CAPN1-228ENST00000534373 WRNQ14191 1432 aaPredicted RBP eCLIP23.68■■□□□ 1.38
CAPN1-228ENST00000534373 SYNJ2O15056 1496 aa23.64■■□□□ 1.38
CAPN1-228ENST00000534373 TOP2BQ02880 1626 aa23.63■■□□□ 1.37
CAPN1-228ENST00000534373 BIVM-ERCC5R4GMW8 1640 aa23.62■■□□□ 1.37
CAPN1-228ENST00000534373 ABCA5Q8WWZ7 1642 aa23.59■■□□□ 1.37
CAPN1-228ENST00000534373 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
CAPN1-228ENST00000534373 SYNJ1O43426 1573 aa23.57■■□□□ 1.36
CAPN1-228ENST00000534373 CYB5RLQ6IPT4 315 aa23.57■■□□□ 1.36
CAPN1-228ENST00000534373 CLASP1Q7Z460 1538 aa23.54■■□□□ 1.36
CAPN1-228ENST00000534373 ARAP1Q96P48 1450 aa23.48■■□□□ 1.35
CAPN1-228ENST00000534373 ERICH3Q5RHP9 1530 aa23.42■■□□□ 1.34
CAPN1-228ENST00000534373 GRIN2AQ12879 1464 aa23.42■■□□□ 1.34
CAPN1-228ENST00000534373 FHAD1B1AJZ9 1412 aa23.42■■□□□ 1.34
CAPN1-228ENST00000534373 ADAMTS12P58397 1594 aa23.39■■□□□ 1.33
CAPN1-228ENST00000534373 NUP160Q12769 1436 aa23.35■■□□□ 1.33
CAPN1-228ENST00000534373 CEP170Q5SW79 1584 aa23.27■■□□□ 1.32
CAPN1-228ENST00000534373 KIF27Q86VH2 1401 aa23.24■■□□□ 1.31
CAPN1-228ENST00000534373 TRHP20396 242 aaPredicted RBP23.22■■□□□ 1.31
CAPN1-228ENST00000534373 IGF1RP08069 1367 aa23.2■■□□□ 1.3
CAPN1-228ENST00000534373 SHROOM2Q13796 1616 aa23.18■■□□□ 1.3
CAPN1-228ENST00000534373 JPH4Q96JJ6 628 aa23.16■■□□□ 1.3
CAPN1-228ENST00000534373 ERCC6L2Q5T890 1561 aa23.14■■□□□ 1.29
CAPN1-228ENST00000534373 CUL7Q14999 1698 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms