RNA–Protein interactions for RNA: ENST00000563283.1

CNOT1-205, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-205ENST00000563283 AEBP2Q6ZN18 517 aaPredicted RBP23.93■■□□□ 1.42
CNOT1-205ENST00000563283 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
CNOT1-205ENST00000563283 SENP3Q9H4L4 574 aaPredicted RBP20.37■□□□□ 0.85
CNOT1-205ENST00000563283 PHF23Q9BUL5 403 aaPredicted RBP20.25■□□□□ 0.83
CNOT1-205ENST00000563283 FOXD1Q16676 465 aa18.92■□□□□ 0.62
CNOT1-205ENST00000563283 PLPPR3Q6T4P5 718 aa18.59■□□□□ 0.57
CNOT1-205ENST00000563283 POTEDQ86YR6 584 aa18.12■□□□□ 0.49
CNOT1-205ENST00000563283 PPP6R1Q9UPN7 881 aa17.95■□□□□ 0.46
CNOT1-205ENST00000563283 ADRA2BP18089 450 aa17.91■□□□□ 0.46
CNOT1-205ENST00000563283 PIAS4Q8N2W9 510 aaPredicted RBP17.77■□□□□ 0.44
CNOT1-205ENST00000563283 MSH5O43196 834 aa17.6■□□□□ 0.41
CNOT1-205ENST00000563283 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
CNOT1-205ENST00000563283 PPP4R3CPQ6ZMV5 832 aa16.34■□□□□ 0.21
CNOT1-205ENST00000563283 MAPK8IP2Q13387 824 aaPredicted RBP16.33■□□□□ 0.2
CNOT1-205ENST00000563283 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
CNOT1-205ENST00000563283 CNKSR2Q8WXI2 1034 aa15.96■□□□□ 0.15
CNOT1-205ENST00000563283 NCBP3Q53F19 620 aaKnown RBP15.82■□□□□ 0.12
CNOT1-205ENST00000563283 HOXD11P31277 338 aaPredicted RBP15.76■□□□□ 0.11
CNOT1-205ENST00000563283 RNF216Q9NWF9 866 aaPredicted RBP15.73■□□□□ 0.11
CNOT1-205ENST00000563283 NPM3O75607 178 aaKnown RBP15.59■□□□□ 0.09
CNOT1-205ENST00000563283 KCNA4P22459 653 aa15.59■□□□□ 0.09
CNOT1-205ENST00000563283 DCAF8L1A6NGE4 600 aa15.47■□□□□ 0.07
CNOT1-205ENST00000563283 DNAJC5BQ9UF47 199 aa15.24■□□□□ 0.03
CNOT1-205ENST00000563283 CACNB1Q02641 598 aaPredicted RBP15.1■□□□□ 0.01
CNOT1-205ENST00000563283 RNF39Q9H2S5 420 aa15.04■□□□□ -0
CNOT1-205ENST00000563283 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.98□□□□□ -0.01
CNOT1-205ENST00000563283 C1QBPQ07021 282 aaKnown RBP14.85□□□□□ -0.03
CNOT1-205ENST00000563283 SLC4A2P04920 1241 aa14.8□□□□□ -0.04
CNOT1-205ENST00000563283 SLC4A1APQ9BWU0 796 aaKnown RBP14.79□□□□□ -0.04
CNOT1-205ENST00000563283 U3KPZ7 1027 aaPredicted RBP14.73□□□□□ -0.05
CNOT1-205ENST00000563283 FOXD4L1Q9NU39 408 aa14.47□□□□□ -0.09
CNOT1-205ENST00000563283 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.44□□□□□ -0.1
CNOT1-205ENST00000563283 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
CNOT1-205ENST00000563283 MYCNP04198 464 aaPredicted RBP14.43□□□□□ -0.1
CNOT1-205ENST00000563283 SPINK5Q9NQ38 1064 aaPredicted RBP14.39□□□□□ -0.11
CNOT1-205ENST00000563283 APLP2Q06481 763 aa14.37□□□□□ -0.11
CNOT1-205ENST00000563283 SAMD1Q6SPF0 538 aaPredicted RBP14.37□□□□□ -0.11
CNOT1-205ENST00000563283 ZBTB22O15209 634 aa14.35□□□□□ -0.11
CNOT1-205ENST00000563283 CAPN15O75808 1086 aa14.33□□□□□ -0.12
CNOT1-205ENST00000563283 ZNF219Q9P2Y4 722 aaPredicted RBP14.22□□□□□ -0.13
CNOT1-205ENST00000563283 DSG3P32926 999 aa14.2□□□□□ -0.14
CNOT1-205ENST00000563283 TRHP20396 242 aaPredicted RBP14.19□□□□□ -0.14
CNOT1-205ENST00000563283 ABCB7O75027 752 aa14.04□□□□□ -0.16
CNOT1-205ENST00000563283 POTEHQ6S545 545 aa14.04□□□□□ -0.16
CNOT1-205ENST00000563283 ATF5Q9Y2D1 282 aaPredicted RBP14.03□□□□□ -0.16
CNOT1-205ENST00000563283 ATXN8OSP0DMR3 200 aa14□□□□□ -0.17
CNOT1-205ENST00000563283 CSRNP3Q8WYN3 585 aa14□□□□□ -0.17
CNOT1-205ENST00000563283 EHMT2Q96KQ7 1210 aa13.97□□□□□ -0.17
CNOT1-205ENST00000563283 POLA2Q14181 598 aa13.89□□□□□ -0.19
CNOT1-205ENST00000563283 ZBTB12Q9Y330 459 aaPredicted RBP13.68□□□□□ -0.22
CNOT1-205ENST00000563283 RBM42Q9BTD8 480 aaKnown RBP13.56□□□□□ -0.24
CNOT1-205ENST00000563283 FBLN2P98095 1184 aa13.48□□□□□ -0.25
CNOT1-205ENST00000563283 OSCARQ8IYS5 282 aa13.46□□□□□ -0.25
CNOT1-205ENST00000563283 MKRN4PQ13434 485 aaPredicted RBP13.42□□□□□ -0.26
CNOT1-205ENST00000563283 AKT1S1Q96B36 256 aa13.31□□□□□ -0.28
CNOT1-205ENST00000563283 SPDYE2BA6NHP3 402 aa13.28□□□□□ -0.28
CNOT1-205ENST00000563283 SPDYE6P0CI01 402 aa13.28□□□□□ -0.28
CNOT1-205ENST00000563283 SPDYE2Q495Y8 402 aa13.28□□□□□ -0.28
CNOT1-205ENST00000563283 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
CNOT1-205ENST00000563283 SSUH2Q9Y2M2 353 aa13.16□□□□□ -0.3
CNOT1-205ENST00000563283 ZNF692Q9BU19 519 aaPredicted RBP13.15□□□□□ -0.3
CNOT1-205ENST00000563283 CHRDL2Q6WN34 429 aa13.1□□□□□ -0.31
CNOT1-205ENST00000563283 PITPNM1O00562 1244 aa13.03□□□□□ -0.32
CNOT1-205ENST00000563283 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
CNOT1-205ENST00000563283 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.33
CNOT1-205ENST00000563283 SPDYE1Q8NFV5 336 aaPredicted RBP12.96□□□□□ -0.33
CNOT1-205ENST00000563283 CLEC11AQ9Y240 323 aa12.88□□□□□ -0.35
CNOT1-205ENST00000563283 PIP4P2Q8N4L2 257 aa12.87□□□□□ -0.35
CNOT1-205ENST00000563283 FXR2P51116 673 aaKnown RBP eCLIP12.86□□□□□ -0.355e-11■■■■□ 26.4
CNOT1-205ENST00000563283 PROM2Q8N271 834 aa12.75□□□□□ -0.37
CNOT1-205ENST00000563283 PRR29P0C7W0 189 aa12.73□□□□□ -0.37
CNOT1-205ENST00000563283 SP7Q8TDD2 431 aaPredicted RBP12.72□□□□□ -0.37
CNOT1-205ENST00000563283 STAG3Q9UJ98 1225 aa12.71□□□□□ -0.37
CNOT1-205ENST00000563283 PRKAR2AP13861 404 aaKnown RBP12.69□□□□□ -0.38
CNOT1-205ENST00000563283 FKBP8Q14318 412 aa12.67□□□□□ -0.38
CNOT1-205ENST00000563283 CHADLQ6NUI6 762 aa12.6□□□□□ -0.39
CNOT1-205ENST00000563283 CREBZFQ9NS37 354 aa12.52□□□□□ -0.41
CNOT1-205ENST00000563283 HAX1O00165 279 aa12.5□□□□□ -0.41
CNOT1-205ENST00000563283 FARP1Q9Y4F1 1045 aaPredicted RBP12.47□□□□□ -0.41
CNOT1-205ENST00000563283 C19orf67A6NJJ6 358 aa12.43□□□□□ -0.42
CNOT1-205ENST00000563283 NISCHQ9Y2I1 1504 aa12.4□□□□□ -0.42
CNOT1-205ENST00000563283 EVX2Q03828 476 aa12.38□□□□□ -0.43
CNOT1-205ENST00000563283 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
CNOT1-205ENST00000563283 FBXO3Q9UK99 471 aa12.32□□□□□ -0.44
CNOT1-205ENST00000563283 CD44P16070 742 aaKnown RBP12.31□□□□□ -0.44
CNOT1-205ENST00000563283 NPM1P06748 294 aaKnown RBP eCLIP12.3□□□□□ -0.44
CNOT1-205ENST00000563283 MIER1Q8N108 512 aa12.29□□□□□ -0.44
CNOT1-205ENST00000563283 PLEKHG5O94827 1062 aa12.28□□□□□ -0.44
CNOT1-205ENST00000563283 PLCD3Q8N3E9 789 aa12.25□□□□□ -0.45
CNOT1-205ENST00000563283 ZRANB1Q9UGI0 708 aa12.18□□□□□ -0.46
CNOT1-205ENST00000563283 PAK3O75914 559 aaPredicted RBP12.17□□□□□ -0.46
CNOT1-205ENST00000563283 ZNF579Q8NAF0 562 aaKnown RBP12.17□□□□□ -0.46
CNOT1-205ENST00000563283 ZBTB47Q9UFB7 747 aaPredicted RBP12.17□□□□□ -0.46
CNOT1-205ENST00000563283 VASPP50552 380 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-205ENST00000563283 GABBR2O75899 941 aa12.14□□□□□ -0.47
CNOT1-205ENST00000563283 CLCN6P51797 869 aa12.11□□□□□ -0.47
CNOT1-205ENST00000563283 RASEFQ8IZ41 740 aa12.07□□□□□ -0.48
CNOT1-205ENST00000563283 NUBP1P53384 320 aa12.06□□□□□ -0.48
CNOT1-205ENST00000563283 TSPYL2Q9H2G4 693 aaPredicted RBP12.06□□□□□ -0.48
CNOT1-205ENST00000563283 PHF12Q96QT6 1004 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms