RNA–Protein interactions for RNA: ENST00000558288.1

HMG20A-204, Transcript of high mobility group 20A, humanhuman

Gene HMG20A, Length 3,558 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20A-204ENST00000558288 NISCHQ9Y2I1 1504 aa9.92□□□□□ -0.82
HMG20A-204ENST00000558288 ABCC9O60706 1549 aa9.25□□□□□ -0.93
HMG20A-204ENST00000558288 DCAF8L2P0C7V8 631 aa9.11□□□□□ -0.95
HMG20A-204ENST00000558288 PABPN1Q86U42 306 aaKnown RBP eCLIP8.75□□□□□ -1.01
HMG20A-204ENST00000558288 CCDC180Q9P1Z9 1646 aa8.73□□□□□ -1.01
HMG20A-204ENST00000558288 DNAJC5BQ9UF47 199 aa8.67□□□□□ -1.02
HMG20A-204ENST00000558288 RB1CC1Q8TDY2 1594 aa8.54□□□□□ -1.04
HMG20A-204ENST00000558288 HRCP23327 699 aa8.49□□□□□ -1.05
HMG20A-204ENST00000558288 SHROOM4Q9ULL8 1493 aa8.45□□□□□ -1.06
HMG20A-204ENST00000558288 SUPT5HO00267 1087 aaKnown RBP8.44□□□□□ -1.06
HMG20A-204ENST00000558288 NACADO15069 1562 aa8.39□□□□□ -1.07
HMG20A-204ENST00000558288 PCGF6Q9BYE7 350 aa8.38□□□□□ -1.07
HMG20A-204ENST00000558288 PPARGC1BQ86YN6 1023 aaKnown RBP8.37□□□□□ -1.07
HMG20A-204ENST00000558288 SCRIBQ14160 1630 aa8.28□□□□□ -1.08
HMG20A-204ENST00000558288 CECR2Q9BXF3 1484 aa8.25□□□□□ -1.09
HMG20A-204ENST00000558288 MYO15BQ96JP2 1530 aa8.24□□□□□ -1.09
HMG20A-204ENST00000558288 AEBP2Q6ZN18 517 aaPredicted RBP8.24□□□□□ -1.09
HMG20A-204ENST00000558288 PELP1Q8IZL8 1130 aaKnown RBP8.22□□□□□ -1.09
HMG20A-204ENST00000558288 CHIC1Q5VXU3 224 aa8.21□□□□□ -1.1
HMG20A-204ENST00000558288 BICRAQ9NZM4 1560 aa8.16□□□□□ -1.1
HMG20A-204ENST00000558288 UNC13AQ9UPW8 1703 aa8.16□□□□□ -1.1
HMG20A-204ENST00000558288 ZCCHC6Q5VYS8 1495 aaKnown RBP8.15□□□□□ -1.1
HMG20A-204ENST00000558288 CC2D2AQ9P2K1 1620 aa8.14□□□□□ -1.11
HMG20A-204ENST00000558288 EIF4G1Q04637 1599 aaKnown RBP8.09□□□□□ -1.11
HMG20A-204ENST00000558288 LOC105371045A0A1W2PR82 267 aa8.08□□□□□ -1.12
HMG20A-204ENST00000558288 TRIM26Q12899 539 aaPredicted RBP8.06□□□□□ -1.12
HMG20A-204ENST00000558288 SCAF1Q9H7N4 1312 aaKnown RBP8.05□□□□□ -1.12
HMG20A-204ENST00000558288 ERCC6Q03468 1493 aa8.05□□□□□ -1.12
HMG20A-204ENST00000558288 DCAF1Q9Y4B6 1507 aa8.04□□□□□ -1.12
HMG20A-204ENST00000558288 ZEB1P37275 1124 aaPredicted RBP8□□□□□ -1.13
HMG20A-204ENST00000558288 DNAJC5Q9H3Z4 198 aa7.99□□□□□ -1.13
HMG20A-204ENST00000558288 TRIM41Q8WV44 630 aa7.99□□□□□ -1.13
HMG20A-204ENST00000558288 MYT1Q01538 1121 aa7.91□□□□□ -1.14
HMG20A-204ENST00000558288 EHMT2Q96KQ7 1210 aa7.86□□□□□ -1.15
HMG20A-204ENST00000558288 ACIN1Q9UKV3 1341 aaKnown RBP7.86□□□□□ -1.15
HMG20A-204ENST00000558288 NESP48681 1621 aa7.85□□□□□ -1.15
HMG20A-204ENST00000558288 NEUROD1Q13562 356 aa7.84□□□□□ -1.15
HMG20A-204ENST00000558288 BAZ1BQ9UIG0 1483 aaKnown RBP7.84□□□□□ -1.15
HMG20A-204ENST00000558288 FAM9AQ8IZU1 332 aaPredicted RBP7.84□□□□□ -1.16
HMG20A-204ENST00000558288 GTF3C3Q9Y5Q9 886 aa7.83□□□□□ -1.16
HMG20A-204ENST00000558288 CENPBP07199 599 aaPredicted RBP7.81□□□□□ -1.16
HMG20A-204ENST00000558288 ATAD2BQ9ULI0 1458 aa7.81□□□□□ -1.16
HMG20A-204ENST00000558288 SMARCA2P51531 1590 aa7.81□□□□□ -1.16
HMG20A-204ENST00000558288 NCAPD3P42695 1498 aa7.78□□□□□ -1.16
HMG20A-204ENST00000558288 CCER1Q8TC90 406 aaPredicted RBP7.77□□□□□ -1.16
HMG20A-204ENST00000558288 FBLN2P98095 1184 aa7.77□□□□□ -1.17
HMG20A-204ENST00000558288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.76□□□□□ -1.17
HMG20A-204ENST00000558288 DIEXFQ68CQ4 756 aaKnown RBP7.75□□□□□ -1.17
HMG20A-204ENST00000558288 CUX2O14529 1486 aa7.75□□□□□ -1.17
HMG20A-204ENST00000558288 PDS5BQ9NTI5 1447 aa7.74□□□□□ -1.17
HMG20A-204ENST00000558288 SMARCA4P51532 1647 aa7.73□□□□□ -1.17
HMG20A-204ENST00000558288 BAZ1AQ9NRL2 1556 aaPredicted RBP7.72□□□□□ -1.17
HMG20A-204ENST00000558288 TRHP20396 242 aaPredicted RBP7.71□□□□□ -1.18
HMG20A-204ENST00000558288 YTHDC1Q96MU7 727 aaKnown RBP7.71□□□□□ -1.18
HMG20A-204ENST00000558288 MROH2BQ7Z745 1585 aa7.7□□□□□ -1.18
HMG20A-204ENST00000558288 OSCARQ8IYS5 282 aa7.68□□□□□ -1.18
HMG20A-204ENST00000558288 TTBK1Q5TCY1 1321 aaPredicted RBP7.67□□□□□ -1.18
HMG20A-204ENST00000558288 CADPSQ9ULU8 1353 aa7.67□□□□□ -1.18
HMG20A-204ENST00000558288 HMGXB3Q12766 1538 aa7.65□□□□□ -1.19
HMG20A-204ENST00000558288 CYB5RLQ6IPT4 315 aa7.64□□□□□ -1.19
HMG20A-204ENST00000558288 CEP164Q9UPV0 1460 aa7.62□□□□□ -1.19
HMG20A-204ENST00000558288 LAMC3Q9Y6N6 1575 aa7.6□□□□□ -1.19
HMG20A-204ENST00000558288 WIZO95785 1651 aa7.6□□□□□ -1.19
HMG20A-204ENST00000558288 FANCD2Q9BXW9 1451 aa7.6□□□□□ -1.19
HMG20A-204ENST00000558288 MRC2Q9UBG0 1479 aa7.6□□□□□ -1.19
HMG20A-204ENST00000558288 KIF21AQ7Z4S6 1674 aa7.58□□□□□ -1.2
HMG20A-204ENST00000558288 ZNF316A6NFI3 1004 aaPredicted RBP7.58□□□□□ -1.2
HMG20A-204ENST00000558288 RSF1Q96T23 1441 aaPredicted RBP7.55□□□□□ -1.2
HMG20A-204ENST00000558288 CHMP7Q8WUX9 453 aaPredicted RBP7.54□□□□□ -1.2
HMG20A-204ENST00000558288 MIER1Q8N108 512 aa7.54□□□□□ -1.2
HMG20A-204ENST00000558288 THOC2Q8NI27 1593 aaKnown RBP7.54□□□□□ -1.2
HMG20A-204ENST00000558288 TDRD9Q8NDG6 1382 aaKnown RBP7.48□□□□□ -1.21
HMG20A-204ENST00000558288 PEG3Q9GZU2 1588 aa7.48□□□□□ -1.21
HMG20A-204ENST00000558288 AQRO60306 1485 aaKnown RBP eCLIP7.47□□□□□ -1.21
HMG20A-204ENST00000558288 CFTRP13569 1480 aa7.46□□□□□ -1.21
HMG20A-204ENST00000558288 ZNF608Q9ULD9 1512 aaPredicted RBP7.46□□□□□ -1.22
HMG20A-204ENST00000558288 URB2Q14146 1524 aaKnown RBP7.46□□□□□ -1.22
HMG20A-204ENST00000558288 CCDC88BA6NC98 1476 aa7.45□□□□□ -1.22
HMG20A-204ENST00000558288 WDR62O43379 1518 aa7.45□□□□□ -1.22
HMG20A-204ENST00000558288 HNRNPUL2Q1KMD3 747 aaKnown RBP7.45□□□□□ -1.22
HMG20A-204ENST00000558288 TOP2AP11388 1531 aaKnown RBP7.44□□□□□ -1.22
HMG20A-204ENST00000558288 BCL11AQ9H165 835 aa7.42□□□□□ -1.22
HMG20A-204ENST00000558288 ANP32EQ9BTT0 268 aa7.42□□□□□ -1.22
HMG20A-204ENST00000558288 SUPT16HQ9Y5B9 1047 aaKnown RBP7.42□□□□□ -1.22
HMG20A-204ENST00000558288 UBTFP17480 764 aaKnown RBP7.41□□□□□ -1.22
HMG20A-204ENST00000558288 SOGA1O94964 1423 aa7.41□□□□□ -1.22
HMG20A-204ENST00000558288 IFT140Q96RY7 1462 aa7.4□□□□□ -1.22
HMG20A-204ENST00000558288 RAD54L2Q9Y4B4 1467 aa7.4□□□□□ -1.22
HMG20A-204ENST00000558288 CEP162Q5TB80 1403 aa7.4□□□□□ -1.23
HMG20A-204ENST00000558288 TOPBP1Q92547 1522 aa7.39□□□□□ -1.23
HMG20A-204ENST00000558288 TSHZ2Q9NRE2 1034 aa7.38□□□□□ -1.23
HMG20A-204ENST00000558288 NPM1P06748 294 aaKnown RBP eCLIP7.37□□□□□ -1.23
HMG20A-204ENST00000558288 WRNQ14191 1432 aaPredicted RBP eCLIP7.37□□□□□ -1.23
HMG20A-204ENST00000558288 CLSPNQ9HAW4 1339 aa7.37□□□□□ -1.23
HMG20A-204ENST00000558288 ARHGEF11O15085 1522 aa7.36□□□□□ -1.23
HMG20A-204ENST00000558288 BCANQ96GW7 911 aa7.35□□□□□ -1.23
HMG20A-204ENST00000558288 CSRNP3Q8WYN3 585 aa7.35□□□□□ -1.23
HMG20A-204ENST00000558288 ABCC8Q09428 1581 aa7.34□□□□□ -1.23
HMG20A-204ENST00000558288 RIMBP3CA6NJZ7 1639 aa7.34□□□□□ -1.23
HMG20A-204ENST00000558288 RIMBP3BA6NNM3 1639 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms