RNA–Protein interactions for RNA: ENST00000527469.1

CAPN1-209, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 584 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-209ENST00000527469 NISCHQ9Y2I1 1504 aa32.31■■■□□ 2.76
CAPN1-209ENST00000527469 CCDC180Q9P1Z9 1646 aa28.75■■■□□ 2.19
CAPN1-209ENST00000527469 ABCC9O60706 1549 aa28.23■■■□□ 2.11
CAPN1-209ENST00000527469 DCAF8L2P0C7V8 631 aa27.2■■□□□ 1.94
CAPN1-209ENST00000527469 RB1CC1Q8TDY2 1594 aa27.14■■□□□ 1.93
CAPN1-209ENST00000527469 NACADO15069 1562 aa27.07■■□□□ 1.92
CAPN1-209ENST00000527469 ZCCHC6Q5VYS8 1495 aaKnown RBP26.9■■□□□ 1.9
CAPN1-209ENST00000527469 MYO15BQ96JP2 1530 aa26.84■■□□□ 1.89
CAPN1-209ENST00000527469 DCAF1Q9Y4B6 1507 aa26.71■■□□□ 1.87
CAPN1-209ENST00000527469 UNC13AQ9UPW8 1703 aa26.42■■□□□ 1.82
CAPN1-209ENST00000527469 PABPN1Q86U42 306 aaKnown RBP eCLIP26.4■■□□□ 1.82
CAPN1-209ENST00000527469 SCRIBQ14160 1630 aa26.28■■□□□ 1.8
CAPN1-209ENST00000527469 BICRAQ9NZM4 1560 aa26.21■■□□□ 1.79
CAPN1-209ENST00000527469 SHROOM4Q9ULL8 1493 aa26■■□□□ 1.75
CAPN1-209ENST00000527469 DNAJC5BQ9UF47 199 aa25.87■■□□□ 1.73
CAPN1-209ENST00000527469 EIF4G1Q04637 1599 aaKnown RBP25.59■■□□□ 1.69
CAPN1-209ENST00000527469 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
CAPN1-209ENST00000527469 CECR2Q9BXF3 1484 aa25.38■■□□□ 1.65
CAPN1-209ENST00000527469 SMARCA4P51532 1647 aa25.09■■□□□ 1.61
CAPN1-209ENST00000527469 BAZ1AQ9NRL2 1556 aaPredicted RBP25.09■■□□□ 1.61
CAPN1-209ENST00000527469 SMARCA2P51531 1590 aa24.97■■□□□ 1.59
CAPN1-209ENST00000527469 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
CAPN1-209ENST00000527469 NCAPD3P42695 1498 aa24.95■■□□□ 1.58
CAPN1-209ENST00000527469 MROH2BQ7Z745 1585 aa24.9■■□□□ 1.58
CAPN1-209ENST00000527469 HMGXB3Q12766 1538 aa24.83■■□□□ 1.57
CAPN1-209ENST00000527469 BAZ1BQ9UIG0 1483 aaKnown RBP24.82■■□□□ 1.56
CAPN1-209ENST00000527469 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
CAPN1-209ENST00000527469 WIZO95785 1651 aa24.63■■□□□ 1.53
CAPN1-209ENST00000527469 RSF1Q96T23 1441 aaPredicted RBP24.61■■□□□ 1.53
CAPN1-209ENST00000527469 ERCC6Q03468 1493 aa24.41■■□□□ 1.5
CAPN1-209ENST00000527469 TOP2AP11388 1531 aaKnown RBP24.4■■□□□ 1.5
CAPN1-209ENST00000527469 NESP48681 1621 aa24.38■■□□□ 1.49
CAPN1-209ENST00000527469 LAMC3Q9Y6N6 1575 aa24.33■■□□□ 1.48
CAPN1-209ENST00000527469 CADPSQ9ULU8 1353 aa24.26■■□□□ 1.47
CAPN1-209ENST00000527469 PDS5BQ9NTI5 1447 aa24.21■■□□□ 1.47
CAPN1-209ENST00000527469 CCDC88BA6NC98 1476 aa24.1■■□□□ 1.45
CAPN1-209ENST00000527469 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.45
CAPN1-209ENST00000527469 CUX2O14529 1486 aa24.08■■□□□ 1.45
CAPN1-209ENST00000527469 SUPT5HO00267 1087 aaKnown RBP24.08■■□□□ 1.45
CAPN1-209ENST00000527469 CFTRP13569 1480 aa24.07■■□□□ 1.44
CAPN1-209ENST00000527469 FANCD2Q9BXW9 1451 aa23.99■■□□□ 1.43
CAPN1-209ENST00000527469 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
CAPN1-209ENST00000527469 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
CAPN1-209ENST00000527469 MRC2Q9UBG0 1479 aa23.94■■□□□ 1.42
CAPN1-209ENST00000527469 PRDM2Q13029 1718 aa23.87■■□□□ 1.41
CAPN1-209ENST00000527469 WDR62O43379 1518 aa23.83■■□□□ 1.41
CAPN1-209ENST00000527469 URB2Q14146 1524 aaKnown RBP23.71■■□□□ 1.39
CAPN1-209ENST00000527469 ABCC8Q09428 1581 aa23.61■■□□□ 1.37
CAPN1-209ENST00000527469 TOPBP1Q92547 1522 aa23.58■■□□□ 1.36
CAPN1-209ENST00000527469 DNMBPQ6XZF7 1577 aa23.56■■□□□ 1.36
CAPN1-209ENST00000527469 IFT140Q96RY7 1462 aa23.47■■□□□ 1.35
CAPN1-209ENST00000527469 DNAJC5Q9H3Z4 198 aa23.39■■□□□ 1.33
CAPN1-209ENST00000527469 POLA1P09884 1462 aaPredicted RBP23.37■■□□□ 1.33
CAPN1-209ENST00000527469 CUX1P39880 1505 aa23.37■■□□□ 1.33
CAPN1-209ENST00000527469 FGD5Q6ZNL6 1462 aa23.33■■□□□ 1.33
CAPN1-209ENST00000527469 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.32
CAPN1-209ENST00000527469 SOGA1O94964 1423 aa23.32■■□□□ 1.32
CAPN1-209ENST00000527469 TARBP1Q13395 1621 aaKnown RBP23.29■■□□□ 1.32
CAPN1-209ENST00000527469 RAD54L2Q9Y4B4 1467 aa23.29■■□□□ 1.32
CAPN1-209ENST00000527469 WRNQ14191 1432 aaPredicted RBP eCLIP23.25■■□□□ 1.31
CAPN1-209ENST00000527469 EIF4G3O43432 1585 aaKnown RBP23.25■■□□□ 1.31
CAPN1-209ENST00000527469 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.314e-7■■■■□ 19.3
CAPN1-209ENST00000527469 TDRD9Q8NDG6 1382 aaKnown RBP23.19■■□□□ 1.3
CAPN1-209ENST00000527469 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
CAPN1-209ENST00000527469 SYNJ1O43426 1573 aa23.15■■□□□ 1.3
CAPN1-209ENST00000527469 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
CAPN1-209ENST00000527469 WDR97A6NE52 1622 aa23.14■■□□□ 1.29
CAPN1-209ENST00000527469 OSCARQ8IYS5 282 aa23.13■■□□□ 1.29
CAPN1-209ENST00000527469 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
CAPN1-209ENST00000527469 FBLN2P98095 1184 aa23.07■■□□□ 1.28
CAPN1-209ENST00000527469 GRIN2BQ13224 1484 aa23.05■■□□□ 1.28
CAPN1-209ENST00000527469 GAPVD1Q14C86 1478 aa23.05■■□□□ 1.28
CAPN1-209ENST00000527469 SNAPC4Q5SXM2 1469 aa23.02■■□□□ 1.28
CAPN1-209ENST00000527469 MAGI1Q96QZ7 1491 aaPredicted RBP22.98■■□□□ 1.27
CAPN1-209ENST00000527469 ABCA5Q8WWZ7 1642 aa22.97■■□□□ 1.27
CAPN1-209ENST00000527469 CHMP7Q8WUX9 453 aaPredicted RBP22.97■■□□□ 1.27
CAPN1-209ENST00000527469 PBRM1Q86U86 1689 aa22.97■■□□□ 1.27
CAPN1-209ENST00000527469 CHD1O14646 1710 aa22.96■■□□□ 1.27
CAPN1-209ENST00000527469 SYNJ2O15056 1496 aa22.9■■□□□ 1.26
CAPN1-209ENST00000527469 ERICH3Q5RHP9 1530 aa22.82■■□□□ 1.24
CAPN1-209ENST00000527469 KIF27Q86VH2 1401 aa22.81■■□□□ 1.24
CAPN1-209ENST00000527469 ADAMTS12P58397 1594 aa22.78■■□□□ 1.24
CAPN1-209ENST00000527469 FHAD1B1AJZ9 1412 aa22.77■■□□□ 1.24
CAPN1-209ENST00000527469 TRIM41Q8WV44 630 aa22.75■■□□□ 1.23
CAPN1-209ENST00000527469 GRIN2AQ12879 1464 aa22.74■■□□□ 1.23
CAPN1-209ENST00000527469 ARHGEF11O15085 1522 aa22.7■■□□□ 1.22
CAPN1-209ENST00000527469 RIMBP3CA6NJZ7 1639 aa22.7■■□□□ 1.22
CAPN1-209ENST00000527469 RIMBP3BA6NNM3 1639 aa22.7■■□□□ 1.22
CAPN1-209ENST00000527469 RIMBP3Q9UFD9 1639 aa22.7■■□□□ 1.22
CAPN1-209ENST00000527469 CLASP1Q7Z460 1538 aa22.68■■□□□ 1.22
CAPN1-209ENST00000527469 IGF1RP08069 1367 aa22.64■■□□□ 1.22
CAPN1-209ENST00000527469 CUL7Q14999 1698 aa22.62■■□□□ 1.21
CAPN1-209ENST00000527469 NUP160Q12769 1436 aa22.6■■□□□ 1.21
CAPN1-209ENST00000527469 CEP170Q5SW79 1584 aa22.59■■□□□ 1.21
CAPN1-209ENST00000527469 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
CAPN1-209ENST00000527469 CYB5RLQ6IPT4 315 aa22.56■■□□□ 1.2
CAPN1-209ENST00000527469 ARAP1Q96P48 1450 aa22.49■■□□□ 1.19
CAPN1-209ENST00000527469 RUSC2Q8N2Y8 1516 aa22.49■■□□□ 1.19
CAPN1-209ENST00000527469 JPH4Q96JJ6 628 aa22.42■■□□□ 1.18
CAPN1-209ENST00000527469 SHROOM2Q13796 1616 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms