RNA–Protein interactions for RNA: ENST00000289577.9

TMED4-201, Transcript of transmembrane p24 trafficking protein 4, humanhuman

TSL 2 BASIC

Gene TMED4, Length 2,203 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED4-201ENST00000289577 NISCHQ9Y2I1 1504 aa41.15■■■■■ 4.18
TMED4-201ENST00000289577 SHROOM4Q9ULL8 1493 aa35.22■■■■□ 3.23
TMED4-201ENST00000289577 ZCCHC6Q5VYS8 1495 aaKnown RBP34.93■■■■□ 3.18
TMED4-201ENST00000289577 CCDC180Q9P1Z9 1646 aa34.82■■■■□ 3.16
TMED4-201ENST00000289577 SUPT5HO00267 1087 aaKnown RBP34.77■■■■□ 3.16
TMED4-201ENST00000289577 CHIC1Q5VXU3 224 aa34.16■■■■□ 3.06
TMED4-201ENST00000289577 MYO15BQ96JP2 1530 aa34.16■■■■□ 3.06
TMED4-201ENST00000289577 HRCP23327 699 aa33.94■■■■□ 3.02
TMED4-201ENST00000289577 DCAF1Q9Y4B6 1507 aa33.85■■■■□ 3.01
TMED4-201ENST00000289577 DCAF8L2P0C7V8 631 aa33.72■■■□□ 2.99
TMED4-201ENST00000289577 PCGF6Q9BYE7 350 aa33.48■■■□□ 2.95
TMED4-201ENST00000289577 LOC105371045A0A1W2PR82 267 aa33.09■■■□□ 2.89
TMED4-201ENST00000289577 ABCC9O60706 1549 aa33.04■■■□□ 2.88
TMED4-201ENST00000289577 PPARGC1BQ86YN6 1023 aaKnown RBP33.03■■■□□ 2.88
TMED4-201ENST00000289577 TRIM26Q12899 539 aaPredicted RBP32.84■■■□□ 2.85
TMED4-201ENST00000289577 RSF1Q96T23 1441 aaPredicted RBP32.73■■■□□ 2.83
TMED4-201ENST00000289577 SCRIBQ14160 1630 aa32.59■■■□□ 2.81
TMED4-201ENST00000289577 RB1CC1Q8TDY2 1594 aa32.48■■■□□ 2.79
TMED4-201ENST00000289577 TRIM41Q8WV44 630 aa32.41■■■□□ 2.78
TMED4-201ENST00000289577 ZEB1P37275 1124 aaPredicted RBP32.37■■■□□ 2.77
TMED4-201ENST00000289577 FAM9AQ8IZU1 332 aaPredicted RBP32.07■■■□□ 2.72
TMED4-201ENST00000289577 NACADO15069 1562 aa32.06■■■□□ 2.72
TMED4-201ENST00000289577 CECR2Q9BXF3 1484 aa32.02■■■□□ 2.72
TMED4-201ENST00000289577 MROH2BQ7Z745 1585 aa31.98■■■□□ 2.71
TMED4-201ENST00000289577 WIZO95785 1651 aa31.83■■■□□ 2.69
TMED4-201ENST00000289577 BAZ1AQ9NRL2 1556 aaPredicted RBP31.73■■■□□ 2.67
TMED4-201ENST00000289577 EIF4G1Q04637 1599 aaKnown RBP31.72■■■□□ 2.67
TMED4-201ENST00000289577 EHMT2Q96KQ7 1210 aa31.69■■■□□ 2.66
TMED4-201ENST00000289577 PELP1Q8IZL8 1130 aaKnown RBP31.52■■■□□ 2.64
TMED4-201ENST00000289577 SCAF1Q9H7N4 1312 aaKnown RBP31.52■■■□□ 2.64
TMED4-201ENST00000289577 TOP2AP11388 1531 aaKnown RBP31.39■■■□□ 2.61
TMED4-201ENST00000289577 WRNQ14191 1432 aaPredicted RBP eCLIP31.36■■■□□ 2.61
TMED4-201ENST00000289577 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.34■■■□□ 2.61
TMED4-201ENST00000289577 CCER1Q8TC90 406 aaPredicted RBP31.3■■■□□ 2.6
TMED4-201ENST00000289577 CCDC88BA6NC98 1476 aa31.26■■■□□ 2.59
TMED4-201ENST00000289577 ABCC8Q09428 1581 aa31.25■■■□□ 2.59
TMED4-201ENST00000289577 SMARCA4P51532 1647 aa31.24■■■□□ 2.59
TMED4-201ENST00000289577 SMARCA2P51531 1590 aa31.22■■■□□ 2.59
TMED4-201ENST00000289577 CEP162Q5TB80 1403 aa31.17■■■□□ 2.58
TMED4-201ENST00000289577 TNIKQ9UKE5 1360 aa31.13■■■□□ 2.57
TMED4-201ENST00000289577 ACIN1Q9UKV3 1341 aaKnown RBP31.09■■■□□ 2.57
TMED4-201ENST00000289577 EEA1Q15075 1411 aa31.08■■■□□ 2.57
TMED4-201ENST00000289577 SOGA1O94964 1423 aa31.07■■■□□ 2.56
TMED4-201ENST00000289577 DIEXFQ68CQ4 756 aaKnown RBP30.99■■■□□ 2.55
TMED4-201ENST00000289577 UNC13AQ9UPW8 1703 aa30.97■■■□□ 2.55
TMED4-201ENST00000289577 NEUROD1Q13562 356 aa30.97■■■□□ 2.55
TMED4-201ENST00000289577 CSRNP3Q8WYN3 585 aa30.94■■■□□ 2.54
TMED4-201ENST00000289577 RUSC2Q8N2Y8 1516 aa30.89■■■□□ 2.54
TMED4-201ENST00000289577 GOLGA3Q08378 1498 aa30.84■■■□□ 2.53
TMED4-201ENST00000289577 TTBK1Q5TCY1 1321 aaPredicted RBP30.82■■■□□ 2.52
TMED4-201ENST00000289577 CENPBP07199 599 aaPredicted RBP30.81■■■□□ 2.52
TMED4-201ENST00000289577 UBTFP17480 764 aaKnown RBP30.77■■■□□ 2.52
TMED4-201ENST00000289577 PEG3Q9GZU2 1588 aa30.69■■■□□ 2.5
TMED4-201ENST00000289577 GTF3C3Q9Y5Q9 886 aa30.69■■■□□ 2.5
TMED4-201ENST00000289577 ZNF316A6NFI3 1004 aaPredicted RBP30.67■■■□□ 2.5
TMED4-201ENST00000289577 KIF21BO75037 1637 aa30.65■■■□□ 2.5
TMED4-201ENST00000289577 CEP164Q9UPV0 1460 aa30.63■■■□□ 2.49
TMED4-201ENST00000289577 BICRAQ9NZM4 1560 aa30.57■■■□□ 2.48
TMED4-201ENST00000289577 SYNJ1O43426 1573 aa30.56■■■□□ 2.48
TMED4-201ENST00000289577 CLIP1P30622 1438 aa30.48■■■□□ 2.47
TMED4-201ENST00000289577 BAZ1BQ9UIG0 1483 aaKnown RBP30.46■■■□□ 2.47
TMED4-201ENST00000289577 VPS8Q8N3P4 1428 aa30.45■■■□□ 2.47
TMED4-201ENST00000289577 HNRNPUL2Q1KMD3 747 aaKnown RBP30.36■■■□□ 2.45
TMED4-201ENST00000289577 PABPN1Q86U42 306 aaKnown RBP eCLIP30.36■■■□□ 2.45
TMED4-201ENST00000289577 ATAD2BQ9ULI0 1458 aa30.31■■■□□ 2.44
TMED4-201ENST00000289577 RAPGEF2Q9Y4G8 1499 aa30.3■■■□□ 2.44
TMED4-201ENST00000289577 MIER1Q8N108 512 aa30.26■■■□□ 2.43
TMED4-201ENST00000289577 APLP2Q06481 763 aa30.2■■■□□ 2.42
TMED4-201ENST00000289577 TOP2BQ02880 1626 aa30.18■■■□□ 2.42
TMED4-201ENST00000289577 YTHDC1Q96MU7 727 aaKnown RBP30.16■■■□□ 2.42
TMED4-201ENST00000289577 CLSPNQ9HAW4 1339 aa30.09■■■□□ 2.41
TMED4-201ENST00000289577 BIVM-ERCC5R4GMW8 1640 aa30.08■■■□□ 2.41
TMED4-201ENST00000289577 ERICH3Q5RHP9 1530 aa30.07■■■□□ 2.4
TMED4-201ENST00000289577 MYT1Q01538 1121 aa30.07■■■□□ 2.4
TMED4-201ENST00000289577 PRXQ9BXM0 1461 aa30.02■■■□□ 2.4
TMED4-201ENST00000289577 ARAP1Q96P48 1450 aa29.98■■■□□ 2.39
TMED4-201ENST00000289577 DHX57Q6P158 1386 aaKnown RBP29.97■■■□□ 2.39
TMED4-201ENST00000289577 RANGAP1P46060 587 aaPredicted RBP29.91■■■□□ 2.38
TMED4-201ENST00000289577 RRBP1Q9P2E9 1410 aaKnown RBP29.85■■■□□ 2.37
TMED4-201ENST00000289577 KANK4Q5T7N3 995 aaPredicted RBP29.81■■■□□ 2.36
TMED4-201ENST00000289577 CUX2O14529 1486 aa29.8■■■□□ 2.36
TMED4-201ENST00000289577 CUX1P39880 1505 aa29.76■■■□□ 2.35
TMED4-201ENST00000289577 KIF27Q86VH2 1401 aa29.72■■■□□ 2.35
TMED4-201ENST00000289577 HMGXB3Q12766 1538 aa29.71■■■□□ 2.35
TMED4-201ENST00000289577 NCAPD3P42695 1498 aa29.67■■■□□ 2.34
TMED4-201ENST00000289577 ARHGAP35Q9NRY4 1499 aa29.64■■■□□ 2.33
TMED4-201ENST00000289577 CCNB3Q8WWL7 1395 aa29.63■■■□□ 2.33
TMED4-201ENST00000289577 CFTRP13569 1480 aa29.55■■■□□ 2.32
TMED4-201ENST00000289577 SUPT16HQ9Y5B9 1047 aaKnown RBP29.51■■■□□ 2.31
TMED4-201ENST00000289577 MAP3K1Q13233 1512 aa29.48■■■□□ 2.31
TMED4-201ENST00000289577 MAPKBP1O60336 1514 aa29.43■■■□□ 2.3
TMED4-201ENST00000289577 RAB3GAP2Q9H2M9 1393 aa29.41■■■□□ 2.3
TMED4-201ENST00000289577 TIAM1Q13009 1591 aa29.41■■■□□ 2.3
TMED4-201ENST00000289577 PRDM2Q13029 1718 aa29.38■■■□□ 2.29
TMED4-201ENST00000289577 IGF1RP08069 1367 aa29.36■■■□□ 2.29
TMED4-201ENST00000289577 ITGAEP38570 1179 aa29.32■■■□□ 2.28
TMED4-201ENST00000289577 SETD5Q9C0A6 1442 aa29.3■■■□□ 2.28
TMED4-201ENST00000289577 LRRC9Q6ZRR7 1453 aa29.29■■■□□ 2.28
TMED4-201ENST00000289577 CARMIL1Q5VZK9 1371 aa29.22■■■□□ 2.27
TMED4-201ENST00000289577 PHLDB1Q86UU1 1377 aa29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms