Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.6■□□□□ 0.73
ABCA4P78363 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ABCA4P78363 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA4P78363 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA4P78363 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ABCA4P78363 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA4P78363 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.59■□□□□ 0.73
ABCA4P78363 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ABCA4P78363 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.58■□□□□ 0.73
ABCA4P78363 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.58■□□□□ 0.73
ABCA4P78363 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ABCA4P78363 AC136469.2-201ENST00000623944 1028 ntBASIC19.58■□□□□ 0.73
ABCA4P78363 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
ABCA4P78363 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ABCA4P78363 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ABCA4P78363 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
ABCA4P78363 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.58■□□□□ 0.72
ABCA4P78363 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.58■□□□□ 0.72
ABCA4P78363 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
ABCA4P78363 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.58■□□□□ 0.72
ABCA4P78363 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.57■□□□□ 0.72
ABCA4P78363 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.57■□□□□ 0.72
ABCA4P78363 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.57■□□□□ 0.72
ABCA4P78363 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.57■□□□□ 0.72
ABCA4P78363 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
ABCA4P78363 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA4P78363 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA4P78363 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA4P78363 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.56■□□□□ 0.72
ABCA4P78363 MIR3181-201ENST00000578512 73 ntBASIC19.56■□□□□ 0.72
ABCA4P78363 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA4P78363 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA4P78363 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ABCA4P78363 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.55■□□□□ 0.72
ABCA4P78363 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.55■□□□□ 0.72
ABCA4P78363 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
ABCA4P78363 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 AC092437.1-201ENST00000624794 1048 ntBASIC19.55■□□□□ 0.72
ABCA4P78363 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA4P78363 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
ABCA4P78363 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.55■□□□□ 0.72
ABCA4P78363 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA4P78363 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.54■□□□□ 0.72
ABCA4P78363 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
ABCA4P78363 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA4P78363 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L2-201ENST00000561772 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.54■□□□□ 0.72
ABCA4P78363 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L6-201ENST00000626483 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L1-201ENST00000627662 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L8-201ENST00000629013 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L3-201ENST00000630187 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L7-201ENST00000630678 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 DUX4L5-201ENST00000630834 1275 ntBASIC19.54■□□□□ 0.72
ABCA4P78363 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA4P78363 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA4P78363 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA4P78363 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.53■□□□□ 0.72
ABCA4P78363 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.53■□□□□ 0.72
ABCA4P78363 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
ABCA4P78363 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA4P78363 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA4P78363 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
ABCA4P78363 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.53■□□□□ 0.72
ABCA4P78363 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.53■□□□□ 0.72
ABCA4P78363 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA4P78363 MIR6089-201ENST00000616698 64 ntBASIC19.52■□□□□ 0.72
ABCA4P78363 AL031602.1-201ENST00000633169 911 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms