RNA–Protein interactions for RNA: ENST00000444415.7

TRAF4-205, Transcript of TNF receptor associated factor 4, humanhuman

TSL 5 BASIC

Gene TRAF4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-205ENST00000444415 NISCHQ9Y2I1 1504 aa53.68■■■■■ 6.18
TRAF4-205ENST00000444415 CCDC180Q9P1Z9 1646 aa47.78■■■■■ 5.24
TRAF4-205ENST00000444415 ABCC9O60706 1549 aa46.86■■■■■ 5.09
TRAF4-205ENST00000444415 RB1CC1Q8TDY2 1594 aa44.97■■■■■ 4.79
TRAF4-205ENST00000444415 NACADO15069 1562 aa44.9■■■■■ 4.78
TRAF4-205ENST00000444415 ZCCHC6Q5VYS8 1495 aaKnown RBP44.72■■■■■ 4.75
TRAF4-205ENST00000444415 DCAF8L2P0C7V8 631 aa44.7■■■■■ 4.75
TRAF4-205ENST00000444415 MYO15BQ96JP2 1530 aa44.62■■■■■ 4.73
TRAF4-205ENST00000444415 DCAF1Q9Y4B6 1507 aa44.4■■■■■ 4.7
TRAF4-205ENST00000444415 UNC13AQ9UPW8 1703 aa44.16■■■■■ 4.66
TRAF4-205ENST00000444415 BICRAQ9NZM4 1560 aa43.78■■■■■ 4.6
TRAF4-205ENST00000444415 PABPN1Q86U42 306 aaKnown RBP eCLIP43.74■■■■■ 4.595e-8■■■□□ 15.8
TRAF4-205ENST00000444415 SCRIBQ14160 1630 aa43.6■■■■■ 4.57
TRAF4-205ENST00000444415 DNAJC5BQ9UF47 199 aa43.21■■■■■ 4.51
TRAF4-205ENST00000444415 SHROOM4Q9ULL8 1493 aa43.14■■■■■ 4.5
TRAF4-205ENST00000444415 EIF4G1Q04637 1599 aaKnown RBP42.56■■■■■ 4.4
TRAF4-205ENST00000444415 CC2D2AQ9P2K1 1620 aa42.42■■■■■ 4.38
TRAF4-205ENST00000444415 CECR2Q9BXF3 1484 aa42.09■■■■■ 4.33
TRAF4-205ENST00000444415 SMARCA4P51532 1647 aa41.7■■■■■ 4.27
TRAF4-205ENST00000444415 BAZ1AQ9NRL2 1556 aaPredicted RBP41.57■■■■■ 4.24
TRAF4-205ENST00000444415 ATAD2BQ9ULI0 1458 aa41.48■■■■■ 4.23
TRAF4-205ENST00000444415 NCAPD3P42695 1498 aa41.45■■■■■ 4.23
TRAF4-205ENST00000444415 MROH2BQ7Z745 1585 aa41.41■■■■■ 4.22
TRAF4-205ENST00000444415 SMARCA2P51531 1590 aa41.36■■■■■ 4.21
TRAF4-205ENST00000444415 PEG3Q9GZU2 1588 aa41.31■■■■■ 4.2
TRAF4-205ENST00000444415 HMGXB3Q12766 1538 aa41.26■■■■■ 4.2
TRAF4-205ENST00000444415 BAZ1BQ9UIG0 1483 aaKnown RBP41.08■■■■■ 4.17
TRAF4-205ENST00000444415 WIZO95785 1651 aa40.97■■■■■ 4.15
TRAF4-205ENST00000444415 RSF1Q96T23 1441 aaPredicted RBP40.85■■■■■ 4.13
TRAF4-205ENST00000444415 NESP48681 1621 aa40.58■■■■■ 4.09
TRAF4-205ENST00000444415 TOP2AP11388 1531 aaKnown RBP40.47■■■■■ 4.07
TRAF4-205ENST00000444415 LAMC3Q9Y6N6 1575 aa40.38■■■■■ 4.05
TRAF4-205ENST00000444415 ERCC6Q03468 1493 aa40.3■■■■■ 4.04
TRAF4-205ENST00000444415 CADPSQ9ULU8 1353 aa40.21■■■■■ 4.03
TRAF4-205ENST00000444415 KIF21AQ7Z4S6 1674 aa40.12■■■■■ 4.01
TRAF4-205ENST00000444415 PDS5BQ9NTI5 1447 aa40.02■■■■■ 4
TRAF4-205ENST00000444415 THOC2Q8NI27 1593 aaKnown RBP40.02■■■■■ 4
TRAF4-205ENST00000444415 CCDC88BA6NC98 1476 aa40■■■■□ 3.99
TRAF4-205ENST00000444415 CFTRP13569 1480 aa39.99■■■■□ 3.99
TRAF4-205ENST00000444415 CUX2O14529 1486 aa39.97■■■■□ 3.99
TRAF4-205ENST00000444415 FANCD2Q9BXW9 1451 aa39.77■■■■□ 3.96
TRAF4-205ENST00000444415 PRDM2Q13029 1718 aa39.73■■■■□ 3.95
TRAF4-205ENST00000444415 CEP164Q9UPV0 1460 aa39.71■■■■□ 3.95
TRAF4-205ENST00000444415 MRC2Q9UBG0 1479 aa39.69■■■■□ 3.94
TRAF4-205ENST00000444415 WDR62O43379 1518 aa39.63■■■■□ 3.93
TRAF4-205ENST00000444415 SUPT5HO00267 1087 aaKnown RBP39.58■■■■□ 3.93
TRAF4-205ENST00000444415 URB2Q14146 1524 aaKnown RBP39.45■■■■□ 3.91
TRAF4-205ENST00000444415 TOPBP1Q92547 1522 aa39.15■■■■□ 3.86
TRAF4-205ENST00000444415 DNMBPQ6XZF7 1577 aa39.08■■■■□ 3.85
TRAF4-205ENST00000444415 ABCC8Q09428 1581 aa39.01■■■■□ 3.84
TRAF4-205ENST00000444415 DNAJC5Q9H3Z4 198 aa38.89■■■■□ 3.82
TRAF4-205ENST00000444415 IFT140Q96RY7 1462 aa38.87■■■■□ 3.81
TRAF4-205ENST00000444415 CUX1P39880 1505 aa38.85■■■■□ 3.81
TRAF4-205ENST00000444415 POLA1P09884 1462 aaPredicted RBP38.82■■■■□ 3.81
TRAF4-205ENST00000444415 ZNF608Q9ULD9 1512 aaPredicted RBP38.82■■■■□ 3.8
TRAF4-205ENST00000444415 TARBP1Q13395 1621 aaKnown RBP38.79■■■■□ 3.8
TRAF4-205ENST00000444415 FGD5Q6ZNL6 1462 aa38.7■■■■□ 3.79
TRAF4-205ENST00000444415 RAD54L2Q9Y4B4 1467 aa38.66■■■■□ 3.78
TRAF4-205ENST00000444415 EIF4G3O43432 1585 aaKnown RBP38.65■■■■□ 3.78
TRAF4-205ENST00000444415 SOGA1O94964 1423 aa38.57■■■■□ 3.77
TRAF4-205ENST00000444415 AQRO60306 1485 aaKnown RBP eCLIP38.53■■■■□ 3.764e-8■■■■■ 48.2
TRAF4-205ENST00000444415 SYNJ1O43426 1573 aa38.49■■■■□ 3.75
TRAF4-205ENST00000444415 WDR97A6NE52 1622 aa38.48■■■■□ 3.75
TRAF4-205ENST00000444415 BIVM-ERCC5R4GMW8 1640 aa38.48■■■■□ 3.75
TRAF4-205ENST00000444415 WRNQ14191 1432 aaPredicted RBP eCLIP38.46■■■■□ 3.75
TRAF4-205ENST00000444415 TOP2BQ02880 1626 aa38.46■■■■□ 3.75
TRAF4-205ENST00000444415 TDRD9Q8NDG6 1382 aaKnown RBP38.41■■■■□ 3.74
TRAF4-205ENST00000444415 ABCA10Q8WWZ4 1543 aa38.3■■■■□ 3.72
TRAF4-205ENST00000444415 ABCA5Q8WWZ7 1642 aa38.22■■■■□ 3.71
TRAF4-205ENST00000444415 CHD1O14646 1710 aa38.21■■■■□ 3.71
TRAF4-205ENST00000444415 OSCARQ8IYS5 282 aa38.2■■■■□ 3.71
TRAF4-205ENST00000444415 PBRM1Q86U86 1689 aa38.17■■■■□ 3.7
TRAF4-205ENST00000444415 SNAPC4Q5SXM2 1469 aa38.17■■■■□ 3.7
TRAF4-205ENST00000444415 GRIN2BQ13224 1484 aa38.15■■■■□ 3.7
TRAF4-205ENST00000444415 GAPVD1Q14C86 1478 aa38.15■■■■□ 3.7
TRAF4-205ENST00000444415 MAGI1Q96QZ7 1491 aaPredicted RBP38.07■■■■□ 3.68
TRAF4-205ENST00000444415 FBLN2P98095 1184 aa37.94■■■■□ 3.66
TRAF4-205ENST00000444415 SYNJ2O15056 1496 aa37.94■■■■□ 3.66
TRAF4-205ENST00000444415 ADAMTS12P58397 1594 aa37.85■■■■□ 3.65
TRAF4-205ENST00000444415 ERICH3Q5RHP9 1530 aa37.83■■■■□ 3.65
TRAF4-205ENST00000444415 CHMP7Q8WUX9 453 aaPredicted RBP37.82■■■■□ 3.64
TRAF4-205ENST00000444415 CLASP1Q7Z460 1538 aa37.79■■■■□ 3.64
TRAF4-205ENST00000444415 RIMBP3CA6NJZ7 1639 aa37.78■■■■□ 3.64
TRAF4-205ENST00000444415 RIMBP3BA6NNM3 1639 aa37.78■■■■□ 3.64
TRAF4-205ENST00000444415 RIMBP3Q9UFD9 1639 aa37.78■■■■□ 3.64
TRAF4-205ENST00000444415 ARHGEF11O15085 1522 aa37.73■■■■□ 3.63
TRAF4-205ENST00000444415 GRIN2AQ12879 1464 aa37.7■■■■□ 3.63
TRAF4-205ENST00000444415 FHAD1B1AJZ9 1412 aa37.69■■■■□ 3.62
TRAF4-205ENST00000444415 KIF27Q86VH2 1401 aa37.61■■■■□ 3.61
TRAF4-205ENST00000444415 CEP170Q5SW79 1584 aa37.59■■■■□ 3.61
TRAF4-205ENST00000444415 NUP160Q12769 1436 aa37.56■■■■□ 3.6
TRAF4-205ENST00000444415 IGF1RP08069 1367 aa37.55■■■■□ 3.6
TRAF4-205ENST00000444415 TRIM41Q8WV44 630 aa37.5■■■■□ 3.59
TRAF4-205ENST00000444415 CUL7Q14999 1698 aa37.46■■■■□ 3.59
TRAF4-205ENST00000444415 ARAP1Q96P48 1450 aa37.46■■■■□ 3.59
TRAF4-205ENST00000444415 RUSC2Q8N2Y8 1516 aa37.41■■■■□ 3.58
TRAF4-205ENST00000444415 SHROOM2Q13796 1616 aa37.34■■■■□ 3.57
TRAF4-205ENST00000444415 ERCC6L2Q5T890 1561 aa37.31■■■■□ 3.56
TRAF4-205ENST00000444415 CYB5RLQ6IPT4 315 aa37.28■■■■□ 3.56
TRAF4-205ENST00000444415 CARMIL1Q5VZK9 1371 aa37.28■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms