Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 AL161729.1-201ENST00000604104 1402 ntBASIC18.57■□□□□ 0.56
TRAV40A0A0B4J280 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TRAV40A0A0B4J280 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV40A0A0B4J280 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.57■□□□□ 0.56
TRAV40A0A0B4J280 AC133561.4-201ENST00000566112 224 ntBASIC18.57■□□□□ 0.56
TRAV40A0A0B4J280 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 AC092171.4-201ENST00000609130 632 ntBASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV40A0A0B4J280 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 AC024257.2-201ENST00000549699 147 ntBASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 DUX4L19-201ENST00000557448 1267 ntBASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 AC142381.2-201ENST00000566120 298 ntBASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 AC009102.2-201ENST00000606772 1639 ntBASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV40A0A0B4J280 AP003733.4-201ENST00000623785 1697 ntBASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 SYT6-210ENST00000641643 1587 ntBASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV40A0A0B4J280 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAV40A0A0B4J280 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV40A0A0B4J280 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
TRAV40A0A0B4J280 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 ALDH1A3-203ENST00000557963 1670 ntBASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 AC099791.2-201ENST00000605725 427 ntBASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
TRAV40A0A0B4J280 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.5■□□□□ 0.55
TRAV40A0A0B4J280 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.5■□□□□ 0.55
TRAV40A0A0B4J280 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.5■□□□□ 0.55
TRAV40A0A0B4J280 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV40A0A0B4J280 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 EDA-201ENST00000338901 1233 ntBASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms