Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX28Q9NUL7 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DDX28Q9NUL7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX28Q9NUL7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DDX28Q9NUL7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX28Q9NUL7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
DDX28Q9NUL7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
DDX28Q9NUL7 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
DDX28Q9NUL7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX28Q9NUL7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
DDX28Q9NUL7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX28Q9NUL7 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX28Q9NUL7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 AC133552.2-201ENST00000619106 1032 ntBASIC20.69■□□□□ 0.9
DDX28Q9NUL7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX28Q9NUL7 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX28Q9NUL7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX28Q9NUL7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 LINC01124-201ENST00000409786 2117 ntBASIC20.66■□□□□ 0.9
DDX28Q9NUL7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX28Q9NUL7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 NTF6A-201ENST00000591175 560 ntBASIC20.65■□□□□ 0.9
DDX28Q9NUL7 MIR6089-201ENST00000616698 64 ntBASIC20.65■□□□□ 0.9
DDX28Q9NUL7 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX28Q9NUL7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.64■□□□□ 0.89
DDX28Q9NUL7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 AC012354.3-201ENST00000623734 483 ntBASIC20.63■□□□□ 0.89
DDX28Q9NUL7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX28Q9NUL7 AL117328.2-201ENST00000624617 1940 ntBASIC20.63■□□□□ 0.89
DDX28Q9NUL7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms