RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NISCHQ9Y2I1 1504 aa33.52■■■□□ 2.96
CCDC88B-202ENST00000356786 DCAF8L2P0C7V8 631 aa32.68■■■□□ 2.82
CCDC88B-202ENST00000356786 SUPT5HO00267 1087 aaKnown RBP32.03■■■□□ 2.72
CCDC88B-202ENST00000356786 SHROOM4Q9ULL8 1493 aa31.17■■■□□ 2.58
CCDC88B-202ENST00000356786 PELP1Q8IZL8 1130 aaKnown RBP31.06■■■□□ 2.56
CCDC88B-202ENST00000356786 EHMT2Q96KQ7 1210 aa30.94■■■□□ 2.54
CCDC88B-202ENST00000356786 PCGF6Q9BYE7 350 aa30.83■■■□□ 2.53
CCDC88B-202ENST00000356786 CENPBP07199 599 aaPredicted RBP30.3■■■□□ 2.44
CCDC88B-202ENST00000356786 FAM9AQ8IZU1 332 aaPredicted RBP30.2■■■□□ 2.42
CCDC88B-202ENST00000356786 ZEB1P37275 1124 aaPredicted RBP30.16■■■□□ 2.42
CCDC88B-202ENST00000356786 APLP2Q06481 763 aa30.11■■■□□ 2.41
CCDC88B-202ENST00000356786 TTBK1Q5TCY1 1321 aaPredicted RBP30.04■■■□□ 2.4
CCDC88B-202ENST00000356786 MYT1Q01538 1121 aa30.03■■■□□ 2.4
CCDC88B-202ENST00000356786 CCER1Q8TC90 406 aaPredicted RBP29.89■■■□□ 2.37
CCDC88B-202ENST00000356786 ERICH6Q7L0X2 663 aa29.83■■■□□ 2.37
CCDC88B-202ENST00000356786 HRCP23327 699 aa29.66■■■□□ 2.34
CCDC88B-202ENST00000356786 YTHDC1Q96MU7 727 aaKnown RBP29.59■■■□□ 2.33
CCDC88B-202ENST00000356786 TRIM41Q8WV44 630 aa29.52■■■□□ 2.32
CCDC88B-202ENST00000356786 TRIM26Q12899 539 aaPredicted RBP29.31■■■□□ 2.28
CCDC88B-202ENST00000356786 NEFLP07196 543 aa29.3■■■□□ 2.28
CCDC88B-202ENST00000356786 RANGAP1P46060 587 aaPredicted RBP29.26■■■□□ 2.27
CCDC88B-202ENST00000356786 PPARGC1BQ86YN6 1023 aaKnown RBP29.16■■■□□ 2.26
CCDC88B-202ENST00000356786 UBTFP17480 764 aaKnown RBP29.05■■■□□ 2.24
CCDC88B-202ENST00000356786 LOC105371045A0A1W2PR82 267 aa28.86■■■□□ 2.21
CCDC88B-202ENST00000356786 ATP1B4Q9UN42 357 aaPredicted RBP28.79■■■□□ 2.2
CCDC88B-202ENST00000356786 CHIC1Q5VXU3 224 aa28.78■■■□□ 2.2
CCDC88B-202ENST00000356786 DIEXFQ68CQ4 756 aaKnown RBP28.54■■■□□ 2.16
CCDC88B-202ENST00000356786 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.44■■■□□ 2.14
CCDC88B-202ENST00000356786 HNRNPUL2Q1KMD3 747 aaKnown RBP28.4■■■□□ 2.14
CCDC88B-202ENST00000356786 ABCC9O60706 1549 aa28.4■■■□□ 2.14
CCDC88B-202ENST00000356786 GTF3C3Q9Y5Q9 886 aa28.38■■■□□ 2.13
CCDC88B-202ENST00000356786 DAXXQ9UER7 740 aaPredicted RBP28.3■■■□□ 2.12
CCDC88B-202ENST00000356786 ITGAEP38570 1179 aa28.3■■■□□ 2.12
CCDC88B-202ENST00000356786 RTL5Q5HYW3 569 aaPredicted RBP28.08■■■□□ 2.09
CCDC88B-202ENST00000356786 POLR3GLQ9BT43 218 aa28.06■■■□□ 2.08
CCDC88B-202ENST00000356786 CNGB1Q14028 1251 aaPredicted RBP27.98■■■□□ 2.07
CCDC88B-202ENST00000356786 ACIN1Q9UKV3 1341 aaKnown RBP27.98■■■□□ 2.07
CCDC88B-202ENST00000356786 BCANQ96GW7 911 aa27.96■■■□□ 2.07
CCDC88B-202ENST00000356786 PABPN1Q86U42 306 aaKnown RBP eCLIP27.89■■■□□ 2.06
CCDC88B-202ENST00000356786 ZCCHC6Q5VYS8 1495 aaKnown RBP27.88■■■□□ 2.05
CCDC88B-202ENST00000356786 CCDC180Q9P1Z9 1646 aa27.79■■■□□ 2.04
CCDC88B-202ENST00000356786 ZNF316A6NFI3 1004 aaPredicted RBP27.73■■■□□ 2.03
CCDC88B-202ENST00000356786 CDK11AQ9UQ88 783 aaPredicted RBP27.63■■■□□ 2.01
CCDC88B-202ENST00000356786 CLSPNQ9HAW4 1339 aa27.59■■■□□ 2.01
CCDC88B-202ENST00000356786 NEUROD1Q13562 356 aa27.5■■□□□ 1.99
CCDC88B-202ENST00000356786 ANP32CO43423 234 aa27.48■■□□□ 1.99
CCDC88B-202ENST00000356786 SCRIBQ14160 1630 aa27.43■■□□□ 1.98
CCDC88B-202ENST00000356786 FAM50AQ14320 339 aaKnown RBP27.42■■□□□ 1.98
CCDC88B-202ENST00000356786 SCAF1Q9H7N4 1312 aaKnown RBP27.37■■□□□ 1.97
CCDC88B-202ENST00000356786 TRIM52Q96A61 297 aa27.22■■□□□ 1.95
CCDC88B-202ENST00000356786 MYT1LQ9UL68 1186 aa27.21■■□□□ 1.95
CCDC88B-202ENST00000356786 FKBP8Q14318 412 aa27.18■■□□□ 1.94
CCDC88B-202ENST00000356786 ANP32AP39687 249 aaKnown RBP27.15■■□□□ 1.94
CCDC88B-202ENST00000356786 SLC4A1APQ9BWU0 796 aaKnown RBP27.13■■□□□ 1.93
CCDC88B-202ENST00000356786 EIF5BO60841 1220 aaKnown RBP27.05■■□□□ 1.92
CCDC88B-202ENST00000356786 DCAF1Q9Y4B6 1507 aa27.04■■□□□ 1.92
CCDC88B-202ENST00000356786 ZNF326Q5BKZ1 582 aaKnown RBP27.01■■□□□ 1.91
CCDC88B-202ENST00000356786 NPM2Q86SE8 214 aaKnown RBP26.98■■□□□ 1.91
CCDC88B-202ENST00000356786 CSRNP3Q8WYN3 585 aa26.86■■□□□ 1.89
CCDC88B-202ENST00000356786 RB1CC1Q8TDY2 1594 aa26.83■■□□□ 1.89
CCDC88B-202ENST00000356786 MIER1Q8N108 512 aa26.83■■□□□ 1.89
CCDC88B-202ENST00000356786 HNRNPUQ00839 825 aaKnown RBP eCLIP26.83■■□□□ 1.88
CCDC88B-202ENST00000356786 DDX10Q13206 875 aaKnown RBP26.81■■□□□ 1.88
CCDC88B-202ENST00000356786 NBR1Q14596 966 aa26.76■■□□□ 1.87
CCDC88B-202ENST00000356786 NACADO15069 1562 aa26.75■■□□□ 1.87
CCDC88B-202ENST00000356786 CANXP27824 592 aaKnown RBP26.73■■□□□ 1.87
CCDC88B-202ENST00000356786 RSF1Q96T23 1441 aaPredicted RBP26.71■■□□□ 1.87
CCDC88B-202ENST00000356786 ZBTB47Q9UFB7 747 aaPredicted RBP26.68■■□□□ 1.86
CCDC88B-202ENST00000356786 FAM9BQ8IZU0 186 aa26.62■■□□□ 1.85
CCDC88B-202ENST00000356786 BCL11AQ9H165 835 aa26.62■■□□□ 1.85
CCDC88B-202ENST00000356786 ANP32EQ9BTT0 268 aa26.58■■□□□ 1.85
CCDC88B-202ENST00000356786 CCDC136Q96JN2 1154 aa26.57■■□□□ 1.84
CCDC88B-202ENST00000356786 P3H3Q8IVL6 736 aa26.55■■□□□ 1.84
CCDC88B-202ENST00000356786 GLIPR1L2Q4G1C9 344 aa26.54■■□□□ 1.84
CCDC88B-202ENST00000356786 TONSLQ96HA7 1378 aa26.54■■□□□ 1.84
CCDC88B-202ENST00000356786 IRX6P78412 446 aaPredicted RBP26.51■■□□□ 1.83
CCDC88B-202ENST00000356786 ANP32BQ92688 251 aaKnown RBP26.45■■□□□ 1.82
CCDC88B-202ENST00000356786 SALL2Q9Y467 1007 aaPredicted RBP26.41■■□□□ 1.82
CCDC88B-202ENST00000356786 MYO15BQ96JP2 1530 aa26.39■■□□□ 1.81
CCDC88B-202ENST00000356786 UPF2Q9HAU5 1272 aaKnown RBP26.36■■□□□ 1.81
CCDC88B-202ENST00000356786 HSP90AA1P07900 732 aaKnown RBP26.35■■□□□ 1.81
CCDC88B-202ENST00000356786 FBLN2P98095 1184 aa26.34■■□□□ 1.81
CCDC88B-202ENST00000356786 MRS2Q9HD23 443 aa26.34■■□□□ 1.81
CCDC88B-202ENST00000356786 ARID3CA6NKF2 412 aa26.32■■□□□ 1.8
CCDC88B-202ENST00000356786 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
CCDC88B-202ENST00000356786 ARXQ96QS3 562 aa26.32■■□□□ 1.8
CCDC88B-202ENST00000356786 HIRIP3Q9BW71 556 aaPredicted RBP26.31■■□□□ 1.8
CCDC88B-202ENST00000356786 TMC1Q8TDI8 760 aa26.29■■□□□ 1.8
CCDC88B-202ENST00000356786 NEFMP07197 916 aa26.26■■□□□ 1.79
CCDC88B-202ENST00000356786 BAZ1AQ9NRL2 1556 aaPredicted RBP26.2■■□□□ 1.79
CCDC88B-202ENST00000356786 ZNF777Q9ULD5 760 aaPredicted RBP26.18■■□□□ 1.78
CCDC88B-202ENST00000356786 BAZ1BQ9UIG0 1483 aaKnown RBP26.14■■□□□ 1.78
CCDC88B-202ENST00000356786 SUPT16HQ9Y5B9 1047 aaKnown RBP26.14■■□□□ 1.78
CCDC88B-202ENST00000356786 SLC24A1O60721 1099 aa26.14■■□□□ 1.77
CCDC88B-202ENST00000356786 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.13■■□□□ 1.77
CCDC88B-202ENST00000356786 CHIC2Q9UKJ5 165 aa26.04■■□□□ 1.76
CCDC88B-202ENST00000356786 WRNQ14191 1432 aaPredicted RBP eCLIP26.04■■□□□ 1.76
CCDC88B-202ENST00000356786 MROH2BQ7Z745 1585 aa26.01■■□□□ 1.75
CCDC88B-202ENST00000356786 DDRGK1Q96HY6 314 aa25.99■■□□□ 1.75
CCDC88B-202ENST00000356786 RTN4Q9NQC3 1192 aaKnown RBP25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms