RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 NISCHQ9Y2I1 1504 aa42.08■■■■■ 4.33
USP48-205ENST00000421625 SHROOM4Q9ULL8 1493 aa36.59■■■■□ 3.45
USP48-205ENST00000421625 SUPT5HO00267 1087 aaKnown RBP36.2■■■■□ 3.39
USP48-205ENST00000421625 CCDC180Q9P1Z9 1646 aa36.06■■■■□ 3.36
USP48-205ENST00000421625 HRCP23327 699 aa35.7■■■■□ 3.31
USP48-205ENST00000421625 MYO15BQ96JP2 1530 aa35.64■■■■□ 3.3
USP48-205ENST00000421625 ZCCHC6Q5VYS8 1495 aaKnown RBP35.58■■■■□ 3.29
USP48-205ENST00000421625 CHIC1Q5VXU3 224 aa35.47■■■■□ 3.27
USP48-205ENST00000421625 DCAF8L2P0C7V8 631 aa35.4■■■■□ 3.26
USP48-205ENST00000421625 PCGF6Q9BYE7 350 aa35.25■■■■□ 3.23
USP48-205ENST00000421625 PPARGC1BQ86YN6 1023 aaKnown RBP35.02■■■■□ 3.2
USP48-205ENST00000421625 DCAF1Q9Y4B6 1507 aa34.7■■■■□ 3.14
USP48-205ENST00000421625 LOC105371045A0A1W2PR82 267 aa34.59■■■■□ 3.13
USP48-205ENST00000421625 ABCC9O60706 1549 aa34.33■■■■□ 3.09
USP48-205ENST00000421625 TRIM26Q12899 539 aaPredicted RBP34.26■■■■□ 3.07
USP48-205ENST00000421625 SCRIBQ14160 1630 aa33.82■■■■□ 3
USP48-205ENST00000421625 ZEB1P37275 1124 aaPredicted RBP33.75■■■□□ 2.99
USP48-205ENST00000421625 NACADO15069 1562 aa33.58■■■□□ 2.97
USP48-205ENST00000421625 TRIM41Q8WV44 630 aa33.54■■■□□ 2.96
USP48-205ENST00000421625 RSF1Q96T23 1441 aaPredicted RBP33.52■■■□□ 2.96
USP48-205ENST00000421625 SCAF1Q9H7N4 1312 aaKnown RBP33.48■■■□□ 2.95
USP48-205ENST00000421625 PELP1Q8IZL8 1130 aaKnown RBP33.48■■■□□ 2.95
USP48-205ENST00000421625 FAM9AQ8IZU1 332 aaPredicted RBP33.48■■■□□ 2.95
USP48-205ENST00000421625 RB1CC1Q8TDY2 1594 aa33.35■■■□□ 2.93
USP48-205ENST00000421625 EHMT2Q96KQ7 1210 aa33.3■■■□□ 2.92
USP48-205ENST00000421625 CECR2Q9BXF3 1484 aa32.96■■■□□ 2.87
USP48-205ENST00000421625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.89■■■□□ 2.86
USP48-205ENST00000421625 ACIN1Q9UKV3 1341 aaKnown RBP32.81■■■□□ 2.84
USP48-205ENST00000421625 CCER1Q8TC90 406 aaPredicted RBP32.78■■■□□ 2.84
USP48-205ENST00000421625 NEUROD1Q13562 356 aa32.77■■■□□ 2.84
USP48-205ENST00000421625 PABPN1Q86U42 306 aaKnown RBP eCLIP32.73■■■□□ 2.83
USP48-205ENST00000421625 MROH2BQ7Z745 1585 aa32.72■■■□□ 2.83
USP48-205ENST00000421625 UNC13AQ9UPW8 1703 aa32.69■■■□□ 2.82
USP48-205ENST00000421625 WIZO95785 1651 aa32.6■■■□□ 2.81
USP48-205ENST00000421625 DIEXFQ68CQ4 756 aaKnown RBP32.55■■■□□ 2.8
USP48-205ENST00000421625 GTF3C3Q9Y5Q9 886 aa32.51■■■□□ 2.79
USP48-205ENST00000421625 CENPBP07199 599 aaPredicted RBP32.42■■■□□ 2.78
USP48-205ENST00000421625 TTBK1Q5TCY1 1321 aaPredicted RBP32.42■■■□□ 2.78
USP48-205ENST00000421625 EIF4G1Q04637 1599 aaKnown RBP32.41■■■□□ 2.78
USP48-205ENST00000421625 BICRAQ9NZM4 1560 aa32.37■■■□□ 2.77
USP48-205ENST00000421625 BAZ1AQ9NRL2 1556 aaPredicted RBP32.37■■■□□ 2.77
USP48-205ENST00000421625 WRNQ14191 1432 aaPredicted RBP eCLIP32.28■■■□□ 2.76
USP48-205ENST00000421625 CEP162Q5TB80 1403 aa32.2■■■□□ 2.75
USP48-205ENST00000421625 SMARCA4P51532 1647 aa32.2■■■□□ 2.75
USP48-205ENST00000421625 ABCC8Q09428 1581 aa32.2■■■□□ 2.75
USP48-205ENST00000421625 CCDC88BA6NC98 1476 aa32.18■■■□□ 2.74
USP48-205ENST00000421625 ZNF316A6NFI3 1004 aaPredicted RBP32.07■■■□□ 2.72
USP48-205ENST00000421625 SOGA1O94964 1423 aa32.04■■■□□ 2.72
USP48-205ENST00000421625 TNIKQ9UKE5 1360 aa32.02■■■□□ 2.72
USP48-205ENST00000421625 YTHDC1Q96MU7 727 aaKnown RBP31.97■■■□□ 2.71
USP48-205ENST00000421625 TOP2AP11388 1531 aaKnown RBP31.96■■■□□ 2.71
USP48-205ENST00000421625 MYT1Q01538 1121 aa31.95■■■□□ 2.71
USP48-205ENST00000421625 RUSC2Q8N2Y8 1516 aa31.88■■■□□ 2.69
USP48-205ENST00000421625 UBTFP17480 764 aaKnown RBP31.87■■■□□ 2.69
USP48-205ENST00000421625 SMARCA2P51531 1590 aa31.87■■■□□ 2.69
USP48-205ENST00000421625 CSRNP3Q8WYN3 585 aa31.85■■■□□ 2.69
USP48-205ENST00000421625 MIER1Q8N108 512 aa31.8■■■□□ 2.68
USP48-205ENST00000421625 EEA1Q15075 1411 aa31.77■■■□□ 2.68
USP48-205ENST00000421625 GOLGA3Q08378 1498 aa31.71■■■□□ 2.67
USP48-205ENST00000421625 HNRNPUL2Q1KMD3 747 aaKnown RBP31.7■■■□□ 2.67
USP48-205ENST00000421625 ATAD2BQ9ULI0 1458 aa31.62■■■□□ 2.65
USP48-205ENST00000421625 PEG3Q9GZU2 1588 aa31.56■■■□□ 2.64
USP48-205ENST00000421625 BAZ1BQ9UIG0 1483 aaKnown RBP31.51■■■□□ 2.63
USP48-205ENST00000421625 CEP164Q9UPV0 1460 aa31.43■■■□□ 2.62
USP48-205ENST00000421625 CLIP1P30622 1438 aa31.42■■■□□ 2.62
USP48-205ENST00000421625 KIF21BO75037 1637 aa31.37■■■□□ 2.61
USP48-205ENST00000421625 VPS8Q8N3P4 1428 aa31.35■■■□□ 2.61
USP48-205ENST00000421625 SYNJ1O43426 1573 aa31.32■■■□□ 2.6
USP48-205ENST00000421625 APLP2Q06481 763 aa31.25■■■□□ 2.59
USP48-205ENST00000421625 RANGAP1P46060 587 aaPredicted RBP31.21■■■□□ 2.59
USP48-205ENST00000421625 RAPGEF2Q9Y4G8 1499 aa31.19■■■□□ 2.58
USP48-205ENST00000421625 NCAPD3P42695 1498 aa31.12■■■□□ 2.57
USP48-205ENST00000421625 SUPT16HQ9Y5B9 1047 aaKnown RBP31.1■■■□□ 2.57
USP48-205ENST00000421625 DHX57Q6P158 1386 aaKnown RBP31.09■■■□□ 2.57
USP48-205ENST00000421625 CLSPNQ9HAW4 1339 aa31.03■■■□□ 2.56
USP48-205ENST00000421625 HMGXB3Q12766 1538 aa31■■■□□ 2.55
USP48-205ENST00000421625 KANK4Q5T7N3 995 aaPredicted RBP30.87■■■□□ 2.53
USP48-205ENST00000421625 ARAP1Q96P48 1450 aa30.84■■■□□ 2.53
USP48-205ENST00000421625 CC2D2AQ9P2K1 1620 aa30.82■■■□□ 2.52
USP48-205ENST00000421625 TSHZ2Q9NRE2 1034 aa30.82■■■□□ 2.52
USP48-205ENST00000421625 TOP2BQ02880 1626 aa30.77■■■□□ 2.52
USP48-205ENST00000421625 RRBP1Q9P2E9 1410 aaKnown RBP30.73■■■□□ 2.51
USP48-205ENST00000421625 ERICH3Q5RHP9 1530 aa30.7■■■□□ 2.51
USP48-205ENST00000421625 PRXQ9BXM0 1461 aa30.7■■■□□ 2.51
USP48-205ENST00000421625 KCNH8Q96L42 1107 aa30.69■■■□□ 2.5
USP48-205ENST00000421625 CFTRP13569 1480 aa30.65■■■□□ 2.5
USP48-205ENST00000421625 CUX2O14529 1486 aa30.64■■■□□ 2.5
USP48-205ENST00000421625 BIVM-ERCC5R4GMW8 1640 aa30.62■■■□□ 2.49
USP48-205ENST00000421625 ITGAEP38570 1179 aa30.6■■■□□ 2.49
USP48-205ENST00000421625 CCNB3Q8WWL7 1395 aa30.59■■■□□ 2.49
USP48-205ENST00000421625 ANP32EQ9BTT0 268 aa30.56■■■□□ 2.48
USP48-205ENST00000421625 CADPSQ9ULU8 1353 aa30.52■■■□□ 2.48
USP48-205ENST00000421625 BCANQ96GW7 911 aa30.51■■■□□ 2.48
USP48-205ENST00000421625 CUX1P39880 1505 aa30.5■■■□□ 2.47
USP48-205ENST00000421625 DNAJC5BQ9UF47 199 aa30.48■■■□□ 2.47
USP48-205ENST00000421625 MAPKBP1O60336 1514 aa30.47■■■□□ 2.47
USP48-205ENST00000421625 RAB3GAP2Q9H2M9 1393 aa30.47■■■□□ 2.47
USP48-205ENST00000421625 ARHGAP35Q9NRY4 1499 aa30.44■■■□□ 2.46
USP48-205ENST00000421625 FKBP8Q14318 412 aa30.39■■■□□ 2.46
USP48-205ENST00000421625 DDX10Q13206 875 aaKnown RBP30.37■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms