RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 NISCHQ9Y2I1 1504 aa34.4■■■■□ 3.1
SHANK1-203ENST00000391813 DCAF8L2P0C7V8 631 aa33.96■■■■□ 3.03
SHANK1-203ENST00000391813 SUPT5HO00267 1087 aaKnown RBP31.76■■■□□ 2.68
SHANK1-203ENST00000391813 SHROOM4Q9ULL8 1493 aa31.42■■■□□ 2.62
SHANK1-203ENST00000391813 PELP1Q8IZL8 1130 aaKnown RBP31.41■■■□□ 2.62
SHANK1-203ENST00000391813 MYT1Q01538 1121 aa30.93■■■□□ 2.54
SHANK1-203ENST00000391813 PCGF6Q9BYE7 350 aa30.78■■■□□ 2.52
SHANK1-203ENST00000391813 ZEB1P37275 1124 aaPredicted RBP30.65■■■□□ 2.5
SHANK1-203ENST00000391813 CENPBP07199 599 aaPredicted RBP30.6■■■□□ 2.49
SHANK1-203ENST00000391813 EHMT2Q96KQ7 1210 aa30.22■■■□□ 2.43
SHANK1-203ENST00000391813 FAM9AQ8IZU1 332 aaPredicted RBP30.11■■■□□ 2.41
SHANK1-203ENST00000391813 APLP2Q06481 763 aa30.05■■■□□ 2.4
SHANK1-203ENST00000391813 HRCP23327 699 aa30.03■■■□□ 2.4
SHANK1-203ENST00000391813 CCER1Q8TC90 406 aaPredicted RBP29.9■■■□□ 2.38
SHANK1-203ENST00000391813 ERICH6Q7L0X2 663 aa29.88■■■□□ 2.37
SHANK1-203ENST00000391813 ABCC9O60706 1549 aa29.81■■■□□ 2.36
SHANK1-203ENST00000391813 TRIM26Q12899 539 aaPredicted RBP29.6■■■□□ 2.33
SHANK1-203ENST00000391813 TRIM41Q8WV44 630 aa29.55■■■□□ 2.32
SHANK1-203ENST00000391813 TTBK1Q5TCY1 1321 aaPredicted RBP29.45■■■□□ 2.31
SHANK1-203ENST00000391813 NEFLP07196 543 aa29.42■■■□□ 2.3
SHANK1-203ENST00000391813 YTHDC1Q96MU7 727 aaKnown RBP29.35■■■□□ 2.29
SHANK1-203ENST00000391813 PABPN1Q86U42 306 aaKnown RBP eCLIP29.17■■■□□ 2.26
SHANK1-203ENST00000391813 UBTFP17480 764 aaKnown RBP29.08■■■□□ 2.25
SHANK1-203ENST00000391813 PPARGC1BQ86YN6 1023 aaKnown RBP29.02■■■□□ 2.24
SHANK1-203ENST00000391813 RANGAP1P46060 587 aaPredicted RBP29.02■■■□□ 2.24
SHANK1-203ENST00000391813 CHIC1Q5VXU3 224 aa28.96■■■□□ 2.23
SHANK1-203ENST00000391813 ATP1B4Q9UN42 357 aaPredicted RBP28.95■■■□□ 2.23
SHANK1-203ENST00000391813 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
SHANK1-203ENST00000391813 LOC105371045A0A1W2PR82 267 aa28.71■■■□□ 2.19
SHANK1-203ENST00000391813 DIEXFQ68CQ4 756 aaKnown RBP28.69■■■□□ 2.18
SHANK1-203ENST00000391813 GTF3C3Q9Y5Q9 886 aa28.5■■■□□ 2.15
SHANK1-203ENST00000391813 ZCCHC6Q5VYS8 1495 aaKnown RBP28.45■■■□□ 2.14
SHANK1-203ENST00000391813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.34■■■□□ 2.13
SHANK1-203ENST00000391813 HNRNPUL2Q1KMD3 747 aaKnown RBP28.33■■■□□ 2.13
SHANK1-203ENST00000391813 DAXXQ9UER7 740 aaPredicted RBP28.33■■■□□ 2.13
SHANK1-203ENST00000391813 SCRIBQ14160 1630 aa28.3■■■□□ 2.12
SHANK1-203ENST00000391813 ACIN1Q9UKV3 1341 aaKnown RBP28.3■■■□□ 2.12
SHANK1-203ENST00000391813 RB1CC1Q8TDY2 1594 aa28.24■■■□□ 2.11
SHANK1-203ENST00000391813 RTL5Q5HYW3 569 aaPredicted RBP28.24■■■□□ 2.11
SHANK1-203ENST00000391813 MYT1LQ9UL68 1186 aa28.1■■■□□ 2.09
SHANK1-203ENST00000391813 NACADO15069 1562 aa28.03■■■□□ 2.08
SHANK1-203ENST00000391813 ZNF316A6NFI3 1004 aaPredicted RBP27.97■■■□□ 2.07
SHANK1-203ENST00000391813 ITGAEP38570 1179 aa27.93■■■□□ 2.06
SHANK1-203ENST00000391813 CLSPNQ9HAW4 1339 aa27.92■■■□□ 2.06
SHANK1-203ENST00000391813 FBLN2P98095 1184 aa27.86■■■□□ 2.05
SHANK1-203ENST00000391813 CDK11AQ9UQ88 783 aaPredicted RBP27.81■■■□□ 2.04
SHANK1-203ENST00000391813 BCANQ96GW7 911 aa27.75■■■□□ 2.03
SHANK1-203ENST00000391813 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
SHANK1-203ENST00000391813 POLR3GLQ9BT43 218 aa27.64■■■□□ 2.02
SHANK1-203ENST00000391813 SCAF1Q9H7N4 1312 aaKnown RBP27.61■■■□□ 2.01
SHANK1-203ENST00000391813 ANP32CO43423 234 aa27.6■■■□□ 2.01
SHANK1-203ENST00000391813 CSRNP3Q8WYN3 585 aa27.53■■■□□ 2
SHANK1-203ENST00000391813 NEUROD1Q13562 356 aa27.53■■■□□ 2
SHANK1-203ENST00000391813 CNGB1Q14028 1251 aaPredicted RBP27.36■■□□□ 1.97
SHANK1-203ENST00000391813 ANP32AP39687 249 aaKnown RBP27.34■■□□□ 1.97
SHANK1-203ENST00000391813 FAM50AQ14320 339 aaKnown RBP27.34■■□□□ 1.97
SHANK1-203ENST00000391813 BAZ1BQ9UIG0 1483 aaKnown RBP27.27■■□□□ 1.96
SHANK1-203ENST00000391813 NPM1P06748 294 aaKnown RBP eCLIP27.22■■□□□ 1.95
SHANK1-203ENST00000391813 FKBP8Q14318 412 aa27.22■■□□□ 1.95
SHANK1-203ENST00000391813 RSF1Q96T23 1441 aaPredicted RBP27.18■■□□□ 1.94
SHANK1-203ENST00000391813 P3H3Q8IVL6 736 aa27.16■■□□□ 1.94
SHANK1-203ENST00000391813 BAZ1AQ9NRL2 1556 aaPredicted RBP27.13■■□□□ 1.93
SHANK1-203ENST00000391813 TRIM52Q96A61 297 aa27.12■■□□□ 1.93
SHANK1-203ENST00000391813 CHMP7Q8WUX9 453 aaPredicted RBP27.09■■□□□ 1.93
SHANK1-203ENST00000391813 MYO15BQ96JP2 1530 aa27.05■■□□□ 1.92
SHANK1-203ENST00000391813 EIF5BO60841 1220 aaKnown RBP27.01■■□□□ 1.91
SHANK1-203ENST00000391813 ANP32EQ9BTT0 268 aa26.97■■□□□ 1.91
SHANK1-203ENST00000391813 GLIPR1L2Q4G1C9 344 aa26.96■■□□□ 1.91
SHANK1-203ENST00000391813 ARID3CA6NKF2 412 aa26.96■■□□□ 1.91
SHANK1-203ENST00000391813 ERCC6Q03468 1493 aa26.94■■□□□ 1.9
SHANK1-203ENST00000391813 MIER1Q8N108 512 aa26.91■■□□□ 1.9
SHANK1-203ENST00000391813 ZNF777Q9ULD5 760 aaPredicted RBP26.84■■□□□ 1.89
SHANK1-203ENST00000391813 HNRNPUQ00839 825 aaKnown RBP eCLIP26.83■■□□□ 1.89
SHANK1-203ENST00000391813 NPM2Q86SE8 214 aaKnown RBP26.82■■□□□ 1.88
SHANK1-203ENST00000391813 EEA1Q15075 1411 aa26.82■■□□□ 1.88
SHANK1-203ENST00000391813 ESF1Q9H501 851 aaKnown RBP26.81■■□□□ 1.88
SHANK1-203ENST00000391813 ZBTB47Q9UFB7 747 aaPredicted RBP26.81■■□□□ 1.88
SHANK1-203ENST00000391813 WRNQ14191 1432 aaPredicted RBP eCLIP26.8■■□□□ 1.88
SHANK1-203ENST00000391813 CECR2Q9BXF3 1484 aa26.78■■□□□ 1.88
SHANK1-203ENST00000391813 DDX10Q13206 875 aaKnown RBP26.76■■□□□ 1.87
SHANK1-203ENST00000391813 SLC4A1APQ9BWU0 796 aaKnown RBP26.76■■□□□ 1.87
SHANK1-203ENST00000391813 SMARCA2P51531 1590 aa26.74■■□□□ 1.87
SHANK1-203ENST00000391813 NBR1Q14596 966 aa26.69■■□□□ 1.86
SHANK1-203ENST00000391813 KIF27Q86VH2 1401 aa26.69■■□□□ 1.86
SHANK1-203ENST00000391813 ZNF326Q5BKZ1 582 aaKnown RBP26.66■■□□□ 1.86
SHANK1-203ENST00000391813 TONSLQ96HA7 1378 aa26.66■■□□□ 1.86
SHANK1-203ENST00000391813 CCDC136Q96JN2 1154 aa26.64■■□□□ 1.86
SHANK1-203ENST00000391813 CANXP27824 592 aaKnown RBP26.63■■□□□ 1.85
SHANK1-203ENST00000391813 ANP32BQ92688 251 aaKnown RBP26.62■■□□□ 1.85
SHANK1-203ENST00000391813 PDS5BQ9NTI5 1447 aa26.62■■□□□ 1.85
SHANK1-203ENST00000391813 MTUS2Q5JR59 1369 aa26.53■■□□□ 1.84
SHANK1-203ENST00000391813 TSPY4P0CV99 314 aa26.51■■□□□ 1.84
SHANK1-203ENST00000391813 TSPY10P0CW01 314 aa26.51■■□□□ 1.84
SHANK1-203ENST00000391813 UPF2Q9HAU5 1272 aaKnown RBP26.51■■□□□ 1.83
SHANK1-203ENST00000391813 FAM9BQ8IZU0 186 aa26.51■■□□□ 1.83
SHANK1-203ENST00000391813 PLEKHD1A6NEE1 506 aa26.48■■□□□ 1.83
SHANK1-203ENST00000391813 CLIP1P30622 1438 aa26.47■■□□□ 1.83
SHANK1-203ENST00000391813 MROH2BQ7Z745 1585 aa26.46■■□□□ 1.83
SHANK1-203ENST00000391813 GOLGA3Q08378 1498 aa26.45■■□□□ 1.83
SHANK1-203ENST00000391813 BCL11AQ9H165 835 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms